Wall clock time and date at job start Tue Mar 31 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.39741 * 111.00079 * 172.60954 * 14 13 12 16 16 C 1.38896 * 120.06467 * 124.02990 * 15 14 13 17 17 C 1.38111 * 119.93742 * 179.69759 * 16 15 14 18 18 C 1.38379 * 120.06165 * 0.59697 * 17 16 15 19 19 Cl 1.73598 * 119.93814 * 179.69837 * 18 17 16 20 20 C 1.38375 * 120.12475 * 359.67569 * 18 17 16 21 21 C 1.38108 * 120.06095 * 0.02562 * 20 18 17 22 22 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 23 23 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 24 24 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 26 26 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 27 27 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 28 28 H 1.08999 * 109.44526 * 173.95833 * 13 12 11 29 29 H 1.08000 * 120.03186 * 359.97111 * 16 15 14 30 30 H 1.07998 * 119.96589 * 180.31142 * 17 16 15 31 31 H 1.07998 * 119.97394 * 180.02562 * 20 18 17 32 32 H 1.08004 * 120.03255 * 180.02562 * 21 20 18 33 33 H 1.08994 * 109.49159 * 303.15220 * 22 14 13 34 34 H 1.08996 * 109.49043 * 183.06336 * 22 14 13 35 35 H 1.08999 * 109.63197 * 350.89564 * 23 11 9 36 36 H 1.09002 * 109.62700 * 111.28074 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7580 -6.9793 1.5198 16 6 2.9122 -7.7167 2.3384 17 6 3.4301 -8.7033 3.1543 18 6 4.7919 -8.9491 3.1660 19 17 5.4404 -10.1847 4.1987 20 6 5.6376 -8.2122 2.3558 21 6 5.1244 -7.2285 1.5333 22 6 1.7771 -5.8907 0.8322 23 6 1.2249 -4.9226 -0.2195 24 1 -0.4850 0.8400 0.0004 25 1 3.7736 -3.9711 -1.0920 26 1 3.8007 -2.6840 0.1423 27 1 3.6077 -4.3397 1.9417 28 1 4.9637 -4.8055 0.8864 29 1 1.8499 -7.5218 2.3335 30 1 2.7723 -9.2804 3.7872 31 1 6.6999 -8.4063 2.3666 32 1 5.7849 -6.6539 0.9008 33 1 1.5327 -5.5231 1.8288 34 1 1.3333 -6.8758 0.6885 35 1 0.1612 -4.7606 -0.0453 36 1 1.3736 -5.3370 -1.2167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005936497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:58 Heat of formation + Delta-G solvation = 2.171322 kcal Electronic energy + Delta-G solvation = -20907.145539 eV Core-core repulsion = 17610.389320 eV Total energy + Delta-G solvation = -3296.756219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34071 -38.32547 -36.88313 -36.03135 -33.54229 -32.57638 -31.70186 -30.48568 -29.50342 -26.80816 -25.63117 -24.04751 -22.15058 -21.91275 -20.75234 -18.95859 -17.87255 -16.64692 -16.09758 -15.78785 -15.45957 -14.81926 -14.64762 -14.41514 -14.15898 -13.93129 -13.77777 -13.70504 -13.28108 -12.60831 -12.23523 -12.01448 -11.76175 -11.66751 -11.44772 -11.28367 -11.16118 -10.98926 -10.90029 -10.79258 -10.65994 -10.29950 -10.09417 -9.59655 -9.18948 -8.92423 -7.83183 -7.67948 -7.32749 -6.27195 -4.72869 1.07373 1.16650 2.05824 3.09106 3.16368 3.19129 3.41651 3.81795 4.02849 4.43731 4.49224 4.62127 4.73284 5.06567 5.15633 5.19256 5.29110 5.44032 5.49230 5.55515 5.65385 5.68566 5.80922 5.85873 5.94787 5.95988 6.13829 6.25834 6.31060 6.39912 6.49714 6.55676 7.02389 7.22278 7.37743 7.48095 8.03195 8.25757 8.94597 9.33231 10.48965 10.67481 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.003155 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.905663 B = 8872.718943 C = 9270.291157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.577 6.577 11 N -0.646 5.646 12 C 0.126 3.874 13 C 0.044 3.956 14 N -0.486 5.486 15 C 0.130 3.870 16 C -0.164 4.164 17 C -0.081 4.081 18 C -0.070 4.070 19 Cl -0.084 7.084 20 C -0.084 4.084 21 C -0.134 4.134 22 C 0.038 3.962 23 C 0.123 3.877 24 H 0.269 0.731 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.720 -14.599 4.573 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.459 6.459 11 N -0.385 5.385 12 C 0.001 3.999 13 C -0.082 4.082 14 N -0.200 5.200 15 C 0.031 3.969 16 C -0.185 4.185 17 C -0.100 4.100 18 C -0.098 4.098 19 Cl -0.055 7.055 20 C -0.103 4.103 21 C -0.155 4.155 22 C -0.089 4.089 23 C -0.001 4.001 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.961 -14.602 4.164 18.160 hybrid contribution 0.450 0.685 0.775 1.128 sum 10.411 -13.917 4.938 18.068 Atomic orbital electron populations 1.70007 1.07103 1.27435 1.35002 1.25731 0.94629 1.00359 0.92532 0.86378 0.80195 0.81378 0.78889 1.19701 1.18806 1.20405 1.20954 0.93551 0.89197 1.54398 0.90919 1.18273 0.86928 0.82127 0.76126 1.90595 1.14360 1.85978 1.55001 1.48296 1.04627 1.05855 1.79681 1.21631 0.82893 0.98704 0.96631 1.22868 0.98553 0.87059 0.99717 1.59013 1.06501 1.05990 1.48533 1.19233 0.93357 0.94443 0.89906 1.21355 1.00831 0.99077 0.97282 1.20878 0.93119 0.97377 0.98673 1.20756 0.93780 0.96164 0.99069 1.98347 1.86657 1.53540 1.66948 1.20864 0.99647 0.94779 0.95050 1.20762 0.93867 0.99739 1.01110 1.22776 0.85482 1.00563 1.00103 1.21237 0.98295 0.84304 0.96276 0.91996 0.92851 0.88168 0.93259 0.89901 0.84533 0.85175 0.85029 0.84755 0.93191 0.89924 0.89042 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.47 11.84 55.55 0.66 -21.81 16 2 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 3 Si 0.91 19.48 29.56 -169.99 -5.02 14.45 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.54 -14.73 8.86 -35.63 -0.32 -15.05 16 8 H 0.07 1.77 5.74 -52.49 -0.30 1.47 16 9 C 0.56 15.42 7.63 -12.99 -0.10 15.32 16 10 O -0.58 -18.19 14.49 5.20 0.08 -18.11 16 11 N -0.65 -14.12 3.00 -173.84 -0.52 -14.64 16 12 C 0.13 2.22 6.50 -3.36 -0.02 2.20 16 13 C 0.04 0.64 5.44 -3.46 -0.02 0.62 16 14 N -0.49 -6.99 4.67 -170.52 -0.80 -7.78 16 15 C 0.13 1.67 5.65 -83.76 -0.47 1.20 16 16 C -0.16 -1.96 8.83 -39.38 -0.35 -2.31 16 17 C -0.08 -0.89 9.82 -39.58 -0.39 -1.28 16 18 C -0.07 -0.77 6.32 -39.48 -0.25 -1.02 16 19 Cl -0.08 -0.84 28.95 -51.86 -1.50 -2.34 16 20 C -0.08 -0.88 9.82 -39.58 -0.39 -1.27 16 21 C -0.13 -1.51 9.14 -39.38 -0.36 -1.87 16 22 C 0.04 0.58 4.30 -3.70 -0.02 0.57 16 23 C 0.12 2.32 6.61 -3.60 -0.02 2.30 16 24 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 25 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 26 H 0.10 1.81 5.46 -51.93 -0.28 1.53 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.99 6.66 -51.93 -0.35 0.64 16 29 H 0.14 1.53 5.81 -52.49 -0.30 1.23 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.34 7.15 -52.48 -0.38 0.96 16 33 H 0.05 0.81 7.81 -51.93 -0.41 0.40 16 34 H 0.08 1.06 6.90 -51.93 -0.36 0.71 16 35 H 0.09 1.90 7.04 -51.93 -0.37 1.54 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -32.44 309.64 -9.23 -41.67 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.99 Total: 2.22 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.80 Total: 1.68 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.66 Total: -44.24 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.08 Total: -18.11 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.44 -9.23 -41.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005936497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.841 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds