Wall clock time and date at job start Tue Mar 31 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31059 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48501 * 109.46969 * 270.00184 * 3 2 1 5 5 H 1.48497 * 109.47072 * 29.99829 * 3 2 1 6 6 H 1.48494 * 109.47084 * 150.00112 * 3 2 1 7 7 C 1.39422 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 162.66538 * 7 2 1 9 9 N 1.36204 * 120.00288 * 342.66000 * 7 2 1 10 10 C 1.37688 * 120.04920 * 331.75919 * 9 7 2 11 11 C 1.33141 * 121.58221 * 179.70051 * 10 9 7 12 12 N 1.37840 * 121.56168 * 0.03951 * 11 10 9 13 13 C 1.39896 * 120.07055 * 180.02562 * 12 11 10 14 14 C 1.38932 * 120.04511 * 86.90984 * 13 12 11 15 15 C 1.38093 * 119.99532 * 179.69933 * 14 13 12 16 16 C 1.38458 * 120.07491 * 0.60337 * 15 14 13 17 17 F 1.35098 * 119.95697 * 179.70069 * 16 15 14 18 18 C 1.38694 * 120.07753 * 359.67593 * 16 15 14 19 19 F 1.35093 * 119.99613 * 180.02562 * 18 16 15 20 20 C 1.38287 * 120.00461 * 0.02562 * 18 16 15 21 21 C 1.35053 * 119.86541 * 359.97438 * 12 11 10 22 22 O 1.21666 * 120.73141 * 179.97438 * 21 12 11 23 23 C 1.35054 * 120.04596 * 151.47127 * 9 7 2 24 24 O 1.21649 * 120.72253 * 0.26052 * 23 9 7 25 25 H 0.97001 * 119.99635 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.20907 * 359.71217 * 10 9 7 27 27 H 1.08008 * 119.22265 * 180.02562 * 11 10 9 28 28 H 1.08003 * 119.99768 * 359.97438 * 14 13 12 29 29 H 1.08004 * 119.96322 * 180.29988 * 15 14 13 30 30 H 1.08010 * 120.03452 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.4920 2.0464 -1.4001 5 1 1.4420 2.6527 0.7000 6 1 3.5421 1.4402 0.7000 7 6 2.0077 -1.2074 -0.0005 8 1 3.0509 -1.2286 -0.2792 9 7 1.3731 -2.3604 0.3505 10 6 0.3088 -2.3234 1.2233 11 6 -0.3372 -3.4307 1.5825 12 7 0.0286 -4.6685 1.0987 13 6 -0.6725 -5.8119 1.4966 14 6 -1.8123 -6.2044 0.8060 15 6 -2.5000 -7.3367 1.1958 16 6 -2.0622 -8.0748 2.2824 17 9 -2.7403 -9.1787 2.6654 18 6 -0.9280 -7.6825 2.9776 19 9 -0.5020 -8.4041 4.0371 20 6 -0.2333 -6.5526 2.5862 21 6 1.0646 -4.7752 0.2388 22 8 1.4011 -5.8599 -0.1976 23 6 1.7832 -3.5409 -0.1615 24 8 2.7215 -3.5908 -0.9342 25 1 -0.4850 0.8401 0.0004 26 1 -0.0098 -1.3732 1.6260 27 1 -1.1674 -3.3575 2.2694 28 1 -2.1579 -5.6265 -0.0385 29 1 -3.3833 -7.6441 0.6556 30 1 0.6498 -6.2464 3.1275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022723488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:57 Heat of formation + Delta-G solvation = -102.920513 kcal Electronic energy + Delta-G solvation = -22714.326513 eV Core-core repulsion = 18725.383396 eV Total energy + Delta-G solvation = -3988.943118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.060 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.61804 -49.69150 -42.74174 -40.52801 -39.14055 -38.25726 -36.40095 -34.24772 -32.16540 -31.64125 -30.03554 -28.25734 -25.54123 -24.44417 -24.29502 -23.27435 -20.47168 -19.86462 -19.68391 -18.84401 -18.51157 -17.64796 -17.59745 -17.42701 -17.10365 -16.86675 -16.09765 -16.08545 -15.66025 -15.59752 -15.18744 -15.03755 -14.71352 -14.49564 -14.20916 -13.82510 -13.74715 -13.21369 -13.19137 -12.85843 -12.72767 -12.48753 -12.28113 -12.09759 -11.64418 -10.75902 -10.63130 -10.27001 -9.88893 -8.89398 -8.43981 -6.37181 -0.42449 -0.18298 0.27526 0.97531 1.36260 1.44596 1.47903 1.59030 2.08219 2.13475 2.39202 2.53457 2.63210 3.02042 3.16411 3.45256 3.53523 3.73811 3.78569 4.04180 4.44229 4.54210 4.68884 4.70575 4.80403 4.97403 5.06035 5.19883 5.38064 5.51849 5.67323 5.93646 6.27024 6.55445 6.76421 6.96494 7.49138 8.33135 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.031283 B = 0.003985 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.837334 B = 7024.828858 C = 7288.487042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.030 3.970 3 Si 1.002 2.998 4 H -0.274 1.274 5 H -0.252 1.252 6 H -0.265 1.265 7 C -0.381 4.381 8 H 0.089 0.911 9 N -0.318 5.318 10 C 0.064 3.936 11 C -0.031 4.031 12 N -0.456 5.456 13 C 0.126 3.874 14 C -0.078 4.078 15 C -0.095 4.095 16 C 0.075 3.925 17 F -0.127 7.127 18 C 0.069 3.931 19 F -0.131 7.131 20 C -0.112 4.112 21 C 0.482 3.518 22 O -0.551 6.551 23 C 0.385 3.615 24 O -0.590 6.590 25 H 0.296 0.704 26 H 0.185 0.815 27 H 0.210 0.790 28 H 0.159 0.841 29 H 0.191 0.809 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.215 -4.930 8.499 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.180 4.180 3 Si 0.822 3.178 4 H -0.200 1.200 5 H -0.176 1.176 6 H -0.189 1.189 7 C -0.509 4.509 8 H 0.107 0.893 9 N -0.026 5.026 10 C -0.059 4.059 11 C -0.147 4.147 12 N -0.178 5.178 13 C 0.037 3.963 14 C -0.097 4.097 15 C -0.114 4.114 16 C 0.055 3.945 17 F -0.105 7.105 18 C 0.048 3.952 19 F -0.109 7.109 20 C -0.132 4.132 21 C 0.272 3.728 22 O -0.428 6.428 23 C 0.177 3.823 24 O -0.475 6.475 25 H 0.107 0.893 26 H 0.202 0.798 27 H 0.226 0.774 28 H 0.177 0.823 29 H 0.208 0.792 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.668 -5.548 7.861 14.366 hybrid contribution 0.734 0.330 -0.042 0.806 sum -9.934 -5.219 7.819 13.677 Atomic orbital electron populations 1.69733 1.07254 1.31204 1.40132 1.26358 0.96348 1.02770 0.92525 0.84828 0.78609 0.75288 0.79037 1.19967 1.17579 1.18942 1.19929 0.96611 0.83875 1.50449 0.89320 1.41505 1.24301 1.06429 1.30318 1.21768 0.90193 1.00242 0.93708 1.21451 1.05809 0.79915 1.07521 1.42992 1.27997 1.06922 1.39871 1.17592 0.94003 0.89054 0.95653 1.21475 0.92773 0.96298 0.99152 1.21237 1.02092 0.93315 0.94769 1.17841 0.92131 0.87016 0.97511 1.91540 1.78411 1.50004 1.90582 1.17371 0.95800 0.93326 0.88674 1.91527 1.89466 1.76415 1.53519 1.21148 1.00887 0.93664 0.97515 1.20455 0.81679 0.89794 0.80828 1.90736 1.67387 1.28278 1.56415 1.20283 0.90223 0.84947 0.86816 1.90634 1.32128 1.85523 1.39179 0.89286 0.79838 0.77360 0.82313 0.79164 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -37.36 11.13 21.73 0.24 -37.12 16 2 C 0.03 1.35 5.02 85.09 0.43 1.77 16 3 Si 1.00 35.43 29.59 68.60 2.03 37.46 16 4 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.25 -7.96 7.11 99.48 0.71 -7.26 16 6 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.38 -19.71 9.12 84.30 0.77 -18.94 16 8 H 0.09 4.92 7.58 -2.91 -0.02 4.90 16 9 N -0.32 -15.82 2.76 -469.38 -1.30 -17.12 16 10 C 0.06 2.50 9.00 82.63 0.74 3.25 16 11 C -0.03 -0.97 10.25 82.60 0.85 -0.12 16 12 N -0.46 -16.14 2.68 -464.91 -1.25 -17.39 16 13 C 0.13 3.61 4.47 38.18 0.17 3.78 16 14 C -0.08 -1.74 9.97 22.40 0.22 -1.52 16 15 C -0.10 -1.68 10.02 22.29 0.22 -1.46 16 16 C 0.08 1.62 7.31 22.43 0.16 1.78 16 17 F -0.13 -2.77 17.18 44.97 0.77 -2.00 16 18 C 0.07 1.70 7.30 22.39 0.16 1.87 16 19 F -0.13 -3.39 17.18 44.97 0.77 -2.62 16 20 C -0.11 -3.00 9.95 22.44 0.22 -2.77 16 21 C 0.48 22.69 7.67 86.89 0.67 23.36 16 22 O -0.55 -28.59 17.04 10.97 0.19 -28.40 16 23 C 0.38 20.82 7.65 86.89 0.66 21.49 16 24 O -0.59 -36.88 16.83 11.02 0.19 -36.69 16 25 H 0.30 11.63 8.30 -92.71 -0.77 10.86 16 26 H 0.18 6.92 6.17 -2.91 -0.02 6.90 16 27 H 0.21 4.36 8.05 -2.91 -0.02 4.34 16 28 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -68.79 287.70 8.15 -60.65 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.22 Total: 10.76 kcal Atomic # 6 Polarization: 27.20 SS G_CDS: 5.29 Total: 32.48 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -2.30 Total: -71.63 kcal Atomic # 8 Polarization: -65.47 SS G_CDS: 0.37 Total: -65.10 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 1.55 Total: -4.62 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Total: -68.79 8.15 -60.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022723488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.274 kcal (2) G-P(sol) polarization free energy of solvation -68.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds