Wall clock time and date at job start Tue Mar 31 2020 03:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30474 * 1 3 3 Si 1.86802 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47391 * 239.99881 * 3 2 1 5 5 H 1.48507 * 109.46794 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47214 * 119.99466 * 3 2 1 7 7 C 1.40444 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.41388 * 119.99783 * 0.02562 * 7 2 1 10 10 O 1.22014 * 120.00316 * 359.97438 * 9 7 2 11 11 C 1.46814 * 119.99982 * 179.97438 * 9 7 2 12 12 C 1.36648 * 125.30973 * 179.97438 * 11 9 7 13 13 C 1.41510 * 106.84277 * 180.02562 * 12 11 9 14 14 C 1.40140 * 133.75699 * 179.97438 * 13 12 11 15 15 C 1.36605 * 119.73697 * 180.02562 * 14 13 12 16 16 Br 1.89103 * 119.76062 * 180.02562 * 15 14 13 17 17 C 1.38959 * 120.47754 * 359.70960 * 15 14 13 18 18 C 1.37998 * 120.69577 * 0.57403 * 17 15 14 19 19 C 1.38800 * 119.89250 * 359.44678 * 18 17 15 20 20 O 1.34929 * 133.11396 * 180.25563 * 19 18 17 21 21 H 0.96999 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.07999 * 126.58052 * 0.04954 * 12 11 9 23 23 H 1.08003 * 120.13088 * 0.05341 * 14 13 12 24 24 H 1.07996 * 119.65179 * 180.27674 * 17 15 14 25 25 H 1.08002 * 120.05630 * 179.73100 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3047 0.0000 0.0000 3 14 2.2388 1.6177 0.0000 4 1 3.0926 1.6964 -1.2125 5 1 1.2737 2.7465 0.0006 6 1 3.0924 1.6965 1.2126 7 6 2.0070 -1.2163 0.0005 8 1 3.0869 -1.2162 0.0001 9 6 1.3000 -2.4407 0.0005 10 8 0.0799 -2.4408 0.0005 11 6 2.0341 -3.7122 0.0005 12 6 1.4633 -4.9537 0.0010 13 6 2.5226 -5.8920 0.0014 14 6 2.5770 -7.2923 0.0025 15 6 3.7885 -7.9234 0.0031 16 35 3.8627 -9.8130 0.0038 17 6 4.9669 -7.1868 -0.0033 18 6 4.9353 -5.8072 0.0015 19 6 3.7164 -5.1432 0.0012 20 8 3.3779 -3.8371 0.0006 21 1 -0.4850 0.8400 -0.0004 22 1 0.4065 -5.1762 0.0008 23 1 1.6646 -7.8703 0.0023 24 1 5.9174 -7.6995 -0.0072 25 1 5.8574 -5.2451 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032911370.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:38 Heat of formation + Delta-G solvation = -17.057200 kcal Electronic energy + Delta-G solvation = -14800.818474 eV Core-core repulsion = 11984.841818 eV Total energy + Delta-G solvation = -2815.976656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 293.968 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.01540 -37.82031 -36.69050 -33.09325 -32.44334 -31.85050 -29.20465 -28.88223 -27.13133 -23.60948 -22.05438 -21.26252 -19.89497 -17.40948 -17.12184 -15.92227 -15.66655 -15.59324 -14.78305 -14.01740 -13.79734 -13.16877 -12.95618 -12.82222 -12.40768 -12.09999 -11.95305 -11.47869 -11.14468 -10.92103 -10.70587 -10.54887 -10.53416 -10.30038 -9.87987 -9.19281 -8.31926 -7.96196 -7.65081 -6.62850 -5.21267 0.97113 1.32639 1.63099 2.56071 2.99815 3.01584 3.04140 3.27124 3.75988 3.84002 4.19331 4.72847 4.97404 5.19017 5.40954 5.42584 5.43930 5.66723 5.93540 6.15741 6.20486 6.33209 6.53636 6.68431 6.89836 7.01097 7.52007 7.80551 8.45953 8.50118 9.94949 10.17772 Molecular weight = 293.97amu Principal moments of inertia in cm(-1) A = 0.056020 B = 0.003471 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.701391 B = 8064.174529 C = 8554.032585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.490 4.490 8 H 0.082 0.918 9 C 0.404 3.596 10 O -0.521 6.521 11 C 0.048 3.952 12 C -0.210 4.210 13 C -0.109 4.109 14 C -0.049 4.049 15 C -0.106 4.106 16 Br -0.061 7.061 17 C -0.092 4.092 18 C -0.091 4.091 19 C 0.041 3.959 20 O -0.166 6.166 21 H 0.281 0.719 22 H 0.158 0.842 23 H 0.133 0.867 24 H 0.138 0.862 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.188 -13.749 -0.003 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.520 4.520 8 H 0.100 0.900 9 C 0.301 3.699 10 O -0.411 6.411 11 C -0.002 4.002 12 C -0.230 4.230 13 C -0.111 4.111 14 C -0.069 4.069 15 C -0.185 4.185 16 Br 0.024 6.976 17 C -0.111 4.111 18 C -0.110 4.110 19 C -0.008 4.008 20 O -0.065 6.065 21 H 0.093 0.907 22 H 0.175 0.825 23 H 0.151 0.849 24 H 0.155 0.845 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.646 -14.186 -0.003 16.613 hybrid contribution 0.407 0.922 -0.001 1.008 sum 9.053 -13.264 -0.003 16.059 Atomic orbital electron populations 1.69896 1.07754 1.29160 1.28109 1.26104 0.94813 1.01504 0.92714 0.86233 0.80025 0.79461 0.80254 1.18558 1.19940 1.18562 1.20978 0.95516 0.91127 1.44426 0.90026 1.17237 0.87836 0.83170 0.81679 1.90670 1.13272 1.85902 1.51219 1.25594 0.78282 1.00156 0.96150 1.21690 0.99664 0.90322 1.11304 1.18969 0.93825 0.93636 1.04692 1.20269 0.96714 0.92158 0.97723 1.21102 0.95953 0.89660 1.11830 1.96639 1.99178 1.03785 1.98041 1.20708 0.97009 0.92256 1.01152 1.19860 0.94642 0.92858 1.03671 1.20057 0.95375 0.82783 1.02624 1.84375 1.24918 1.23491 1.73689 0.90735 0.82467 0.84915 0.84455 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.64 11.72 55.57 0.65 -18.99 15 2 C 0.07 1.90 5.50 -17.30 -0.10 1.80 15 3 Si 0.92 18.35 29.56 -169.99 -5.03 13.33 15 4 H -0.26 -5.11 7.11 56.52 0.40 -4.70 15 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 7 C -0.49 -13.15 9.13 -37.55 -0.34 -13.49 15 8 H 0.08 2.04 7.68 -52.49 -0.40 1.63 15 9 C 0.40 11.22 6.90 -34.92 -0.24 10.98 15 10 O -0.52 -15.95 15.38 4.91 0.08 -15.87 15 11 C 0.05 1.15 6.99 -36.69 -0.26 0.90 15 12 C -0.21 -4.50 10.62 -38.91 -0.41 -4.92 15 13 C -0.11 -2.05 6.19 -106.92 -0.66 -2.72 15 14 C -0.05 -0.76 9.78 -39.46 -0.39 -1.15 15 15 C -0.11 -1.48 6.18 -39.90 -0.25 -1.73 15 16 Br -0.06 -0.72 33.67 -68.01 -2.29 -3.01 15 17 C -0.09 -1.20 9.76 -39.40 -0.38 -1.58 15 18 C -0.09 -1.34 10.07 -39.46 -0.40 -1.74 15 19 C 0.04 0.77 7.39 -38.36 -0.28 0.49 15 20 O -0.17 -3.64 10.36 2.15 0.02 -3.61 15 21 H 0.28 6.79 8.29 -40.82 -0.34 6.45 15 22 H 0.16 3.23 8.06 -52.49 -0.42 2.80 15 23 H 0.13 1.84 8.06 -52.48 -0.42 1.41 15 24 H 0.14 1.40 8.06 -52.49 -0.42 0.97 15 25 H 0.14 1.65 8.06 -52.49 -0.42 1.22 15 LS Contribution 258.72 15.07 3.90 3.90 Total: -1.00 -29.59 258.72 -7.60 -37.20 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -1.23 Total: 0.20 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.71 Total: -13.15 kcal Atomic # 7 Polarization: -19.64 SS G_CDS: 0.65 Total: -18.99 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.10 Total: -19.49 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -2.29 Total: -3.01 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.59 -7.60 -37.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032911370.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.140 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds