Wall clock time and date at job start Tue Mar 31 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30474 * 1 3 3 Si 1.86802 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47391 * 239.99881 * 3 2 1 5 5 H 1.48507 * 109.46794 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47214 * 119.99466 * 3 2 1 7 7 C 1.40444 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.41388 * 119.99783 * 0.02562 * 7 2 1 10 10 O 1.22014 * 120.00316 * 359.97438 * 9 7 2 11 11 C 1.46814 * 119.99982 * 179.97438 * 9 7 2 12 12 C 1.36648 * 125.30973 * 179.97438 * 11 9 7 13 13 C 1.41510 * 106.84277 * 180.02562 * 12 11 9 14 14 C 1.40140 * 133.75699 * 179.97438 * 13 12 11 15 15 C 1.36605 * 119.73697 * 180.02562 * 14 13 12 16 16 Br 1.89103 * 119.76062 * 180.02562 * 15 14 13 17 17 C 1.38959 * 120.47754 * 359.70960 * 15 14 13 18 18 C 1.37998 * 120.69577 * 0.57403 * 17 15 14 19 19 C 1.38800 * 119.89250 * 359.44678 * 18 17 15 20 20 O 1.34929 * 133.11396 * 180.25563 * 19 18 17 21 21 H 0.96999 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.07999 * 126.58052 * 0.04954 * 12 11 9 23 23 H 1.08003 * 120.13088 * 0.05341 * 14 13 12 24 24 H 1.07996 * 119.65179 * 180.27674 * 17 15 14 25 25 H 1.08002 * 120.05630 * 179.73100 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3047 0.0000 0.0000 3 14 2.2388 1.6177 0.0000 4 1 3.0926 1.6964 -1.2125 5 1 1.2737 2.7465 0.0006 6 1 3.0924 1.6965 1.2126 7 6 2.0070 -1.2163 0.0005 8 1 3.0869 -1.2162 0.0001 9 6 1.3000 -2.4407 0.0005 10 8 0.0799 -2.4408 0.0005 11 6 2.0341 -3.7122 0.0005 12 6 1.4633 -4.9537 0.0010 13 6 2.5226 -5.8920 0.0014 14 6 2.5770 -7.2923 0.0025 15 6 3.7885 -7.9234 0.0031 16 35 3.8627 -9.8130 0.0038 17 6 4.9669 -7.1868 -0.0033 18 6 4.9353 -5.8072 0.0015 19 6 3.7164 -5.1432 0.0012 20 8 3.3779 -3.8371 0.0006 21 1 -0.4850 0.8400 -0.0004 22 1 0.4065 -5.1762 0.0008 23 1 1.6646 -7.8703 0.0023 24 1 5.9174 -7.6995 -0.0072 25 1 5.8574 -5.2451 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032911370.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:36 Heat of formation + Delta-G solvation = -34.515300 kcal Electronic energy + Delta-G solvation = -14801.575514 eV Core-core repulsion = 11984.841818 eV Total energy + Delta-G solvation = -2816.733696 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 293.968 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.54407 -39.24279 -38.62739 -35.04342 -33.97666 -33.02825 -30.77506 -30.24015 -28.93828 -25.21691 -23.42023 -22.75076 -21.65991 -19.20098 -18.53989 -17.85257 -17.26553 -16.88408 -16.31604 -15.44748 -15.21278 -15.05790 -14.35224 -14.31207 -14.07343 -13.85389 -13.37659 -13.05967 -12.78426 -12.72521 -12.17870 -12.08384 -11.70903 -11.31741 -11.30391 -11.07553 -10.04722 -9.57969 -9.19463 -8.56668 -7.30679 -0.42943 0.03920 0.51474 0.93318 1.36580 1.43501 1.53208 1.74605 2.16271 2.27239 2.47535 3.37956 3.40708 3.62688 3.93119 4.08350 4.22501 4.24083 4.50777 4.74648 4.94022 4.99523 5.04413 5.11756 5.32229 5.40191 5.78091 5.96008 6.48528 6.50068 7.92026 8.27011 Molecular weight = 293.97amu Principal moments of inertia in cm(-1) A = 0.056020 B = 0.003471 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.701391 B = 8064.174529 C = 8554.032585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.023 3.977 3 Si 1.003 2.997 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.251 1.251 7 C -0.518 4.518 8 H 0.092 0.908 9 C 0.385 3.615 10 O -0.572 6.572 11 C -0.001 4.001 12 C -0.195 4.195 13 C -0.135 4.135 14 C -0.047 4.047 15 C -0.108 4.108 16 Br -0.029 7.029 17 C -0.064 4.064 18 C -0.093 4.093 19 C 0.027 3.973 20 O -0.180 6.180 21 H 0.292 0.708 22 H 0.155 0.845 23 H 0.148 0.852 24 H 0.180 0.820 25 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.118 -15.136 -0.005 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.199 4.199 3 Si 0.820 3.180 4 H -0.174 1.174 5 H -0.185 1.185 6 H -0.174 1.174 7 C -0.548 4.548 8 H 0.110 0.890 9 C 0.285 3.715 10 O -0.467 6.467 11 C -0.050 4.050 12 C -0.214 4.214 13 C -0.137 4.137 14 C -0.067 4.067 15 C -0.187 4.187 16 Br 0.056 6.944 17 C -0.084 4.084 18 C -0.112 4.112 19 C -0.022 4.022 20 O -0.080 6.080 21 H 0.103 0.897 22 H 0.172 0.828 23 H 0.166 0.834 24 H 0.197 0.803 25 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.589 -15.605 -0.005 19.438 hybrid contribution -0.387 0.991 0.000 1.064 sum 11.202 -14.614 -0.005 18.414 Atomic orbital electron populations 1.70002 1.09964 1.31031 1.28618 1.27362 0.95679 1.05660 0.91183 0.84975 0.78568 0.73589 0.80838 1.17431 1.18464 1.17444 1.21408 0.96226 0.92033 1.45091 0.89005 1.17623 0.87699 0.85191 0.80953 1.90599 1.14998 1.87423 1.53640 1.24673 0.79594 0.99461 1.01308 1.21815 1.00243 0.90584 1.08791 1.19016 0.92814 0.94890 1.06951 1.20466 0.98415 0.90793 0.97013 1.21410 0.95615 0.91632 1.10079 1.96697 1.99103 1.00746 1.97873 1.21265 0.98391 0.91516 0.97180 1.20327 0.94171 0.93641 1.03052 1.20680 0.97037 0.81553 1.02909 1.84258 1.23575 1.25511 1.74629 0.89728 0.82762 0.83417 0.80307 0.81413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.66 11.72 21.90 0.26 -43.41 15 2 C 0.02 1.18 5.50 85.43 0.47 1.65 15 3 Si 1.00 37.78 29.56 68.60 2.03 39.81 15 4 H -0.25 -8.94 7.11 99.48 0.71 -8.24 15 5 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 6 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 7 C -0.52 -29.14 9.13 23.58 0.22 -28.93 15 8 H 0.09 4.76 7.68 -2.91 -0.02 4.74 15 9 C 0.38 22.87 6.90 25.29 0.17 23.05 15 10 O -0.57 -37.70 15.38 -5.36 -0.08 -37.78 15 11 C 0.00 -0.05 6.99 24.14 0.17 0.12 15 12 C -0.19 -8.77 10.62 22.70 0.24 -8.53 15 13 C -0.13 -5.06 6.19 -21.35 -0.13 -5.20 15 14 C -0.05 -1.38 9.78 22.35 0.22 -1.16 15 15 C -0.11 -2.62 6.18 22.06 0.14 -2.49 15 16 Br -0.03 -0.57 33.67 -20.37 -0.69 -1.26 15 17 C -0.06 -1.39 9.76 22.39 0.22 -1.17 15 18 C -0.09 -2.44 10.07 22.35 0.22 -2.22 15 19 C 0.03 1.00 7.39 23.06 0.17 1.17 15 20 O -0.18 -8.16 10.36 -15.23 -0.16 -8.32 15 21 H 0.29 14.57 8.29 -92.71 -0.77 13.80 15 22 H 0.15 6.79 8.06 -2.91 -0.02 6.76 15 23 H 0.15 3.81 8.06 -2.91 -0.02 3.78 15 24 H 0.18 2.47 8.06 -2.91 -0.02 2.45 15 25 H 0.17 3.35 8.06 -2.91 -0.02 3.33 15 Total: -1.00 -69.38 258.72 4.70 -64.67 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.24 Total: 9.97 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 2.11 Total: -23.69 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.26 Total: -43.41 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -0.24 Total: -46.10 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -0.69 Total: -1.26 kcal Total: -69.38 4.70 -64.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032911370.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.159 kcal (2) G-P(sol) polarization free energy of solvation -69.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds