Wall clock time and date at job start Tue Mar 31 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86806 * 120.00048 * 2 1 4 4 H 1.48492 * 109.47317 * 270.00413 * 3 2 1 5 5 H 1.48499 * 109.46850 * 30.00473 * 3 2 1 6 6 H 1.48499 * 109.47060 * 150.00286 * 3 2 1 7 7 C 1.39948 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00433 * 200.67142 * 7 2 1 9 9 C 1.41346 * 119.99678 * 20.67355 * 7 2 1 10 10 C 1.40839 * 120.25698 * 47.37489 * 9 7 2 11 11 Br 1.89104 * 120.14212 * 359.97438 * 10 9 7 12 12 C 1.37738 * 119.71852 * 179.70321 * 10 9 7 13 13 C 1.38593 * 120.23735 * 0.53101 * 12 10 9 14 14 C 1.38651 * 120.51588 * 359.48918 * 13 12 10 15 15 C 1.37616 * 120.27534 * 0.23153 * 14 13 12 16 16 C 1.50704 * 120.11834 * 179.97438 * 15 14 13 17 17 F 1.39891 * 109.47216 * 0.02562 * 16 15 14 18 18 F 1.39902 * 109.47074 * 120.00225 * 16 15 14 19 19 F 1.39900 * 109.46815 * 239.99809 * 16 15 14 20 20 H 0.97000 * 119.99595 * 0.30003 * 1 2 3 21 21 H 1.08005 * 119.88420 * 180.30226 * 12 10 9 22 22 H 1.07994 * 119.74167 * 179.76091 * 13 12 10 23 23 H 1.07993 * 119.86227 * 180.25418 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4402 0.7000 7 6 2.0081 -1.2120 -0.0005 8 1 3.0360 -1.2422 0.3296 9 6 1.3696 -2.3964 -0.4332 10 6 0.6323 -2.4075 -1.6331 11 35 0.4903 -0.8357 -2.6749 12 6 0.0197 -3.5695 -2.0474 13 6 0.1179 -4.7212 -1.2828 14 6 0.8409 -4.7213 -0.0997 15 6 1.4662 -3.5736 0.3313 16 6 2.2506 -3.5776 1.6181 17 9 2.1993 -4.8524 2.1917 18 9 3.5821 -3.2389 1.3537 19 9 1.6993 -2.6449 2.5032 20 1 -0.4849 0.8401 -0.0044 21 1 -0.5424 -3.5822 -2.9696 22 1 -0.3688 -5.6268 -1.6133 23 1 0.9139 -5.6258 0.4858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036533717.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:47 Heat of formation + Delta-G solvation = -147.557769 kcal Electronic energy + Delta-G solvation = -16423.822507 eV Core-core repulsion = 13060.330181 eV Total energy + Delta-G solvation = -3363.492326 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 293.956 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.84911 -48.41192 -48.25438 -39.62894 -35.63297 -33.00319 -32.18948 -30.07454 -27.58177 -26.12898 -22.89830 -22.31892 -19.46963 -19.16482 -19.10015 -18.44960 -17.07170 -16.16848 -15.80010 -15.24598 -15.22712 -15.01673 -14.80378 -14.56506 -14.50653 -14.33098 -13.90525 -13.46347 -13.19394 -13.01696 -12.65324 -12.27097 -11.78627 -11.66438 -11.58329 -11.10548 -10.08714 -9.68242 -9.02854 -8.64876 -6.54294 0.44346 0.80295 1.37292 1.39421 1.45288 1.47268 2.07914 2.23328 2.65299 3.16996 3.26569 3.51597 3.86357 4.26052 4.55938 4.61704 4.94717 5.16659 5.27641 5.52859 5.65209 5.77339 6.04326 6.34691 6.62296 6.85113 8.32057 Molecular weight = 293.96amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.010984 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.612454 B = 2548.644148 C = 3680.417355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.073 3.927 3 Si 0.940 3.060 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.079 0.921 9 C 0.151 3.849 10 C -0.156 4.156 11 Br -0.069 7.069 12 C -0.049 4.049 13 C -0.217 4.217 14 C -0.042 4.042 15 C -0.295 4.295 16 C 0.526 3.474 17 F -0.186 7.186 18 F -0.192 7.192 19 F -0.188 7.188 20 H 0.290 0.710 21 H 0.133 0.867 22 H 0.150 0.850 23 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 -3.001 -3.210 4.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.147 4.147 3 Si 0.762 3.238 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.537 4.537 8 H 0.097 0.903 9 C 0.146 3.854 10 C -0.236 4.236 11 Br 0.016 6.984 12 C -0.069 4.069 13 C -0.237 4.237 14 C -0.061 4.061 15 C -0.298 4.298 16 C 0.472 3.528 17 F -0.168 7.168 18 F -0.173 7.173 19 F -0.169 7.169 20 H 0.101 0.899 21 H 0.151 0.849 22 H 0.168 0.832 23 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.524 -2.254 -3.545 4.234 hybrid contribution 0.490 0.553 0.637 0.975 sum -0.034 -1.701 -2.909 3.370 Atomic orbital electron populations 1.69825 1.08498 1.30917 1.32114 1.25997 0.94967 1.02510 0.91247 0.85779 0.79848 0.78257 0.79960 1.18097 1.19172 1.18722 1.19525 0.99625 0.92378 1.42126 0.90296 1.17172 0.87917 0.91694 0.88591 1.22015 1.11973 0.91839 0.97810 1.96249 1.97363 1.38514 1.66244 1.21160 0.95277 0.91460 0.99042 1.20883 1.07009 0.98761 0.97009 1.20932 0.93215 0.95890 0.96020 1.20142 1.13499 0.99193 0.97008 1.18099 0.77402 0.72210 0.85064 1.93058 1.96412 1.40620 1.86713 1.93100 1.37721 1.92354 1.94135 1.93139 1.85543 1.66857 1.71365 0.89881 0.84906 0.83225 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.28 11.26 21.83 0.25 -39.03 14 2 C 0.07 3.56 3.50 85.26 0.30 3.86 14 3 Si 0.94 38.45 29.61 68.60 2.03 40.48 14 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 14 5 H -0.27 -10.41 7.11 99.48 0.71 -9.71 14 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 14 7 C -0.51 -26.03 6.99 23.45 0.16 -25.86 14 8 H 0.08 4.14 6.73 -2.91 -0.02 4.12 14 9 C 0.15 7.48 5.19 -21.28 -0.11 7.37 14 10 C -0.16 -7.17 5.88 22.79 0.13 -7.04 14 11 Br -0.07 -2.97 29.47 -20.37 -0.60 -3.57 14 12 C -0.05 -1.93 9.77 22.24 0.22 -1.71 14 13 C -0.22 -7.73 10.05 22.45 0.23 -7.50 14 14 C -0.04 -1.63 9.42 22.22 0.21 -1.42 14 15 C -0.30 -13.44 5.42 -19.41 -0.11 -13.54 14 16 C 0.53 23.04 2.90 71.24 0.21 23.25 14 17 F -0.19 -7.15 15.97 44.97 0.72 -6.43 14 18 F -0.19 -8.50 15.83 44.97 0.71 -7.78 14 19 F -0.19 -8.83 16.56 44.97 0.74 -8.09 14 20 H 0.29 13.36 8.30 -92.71 -0.77 12.59 14 21 H 0.13 4.44 8.06 -2.91 -0.02 4.42 14 22 H 0.15 4.10 8.06 -2.91 -0.02 4.07 14 23 H 0.14 4.49 7.14 -2.91 -0.02 4.47 14 Total: -1.00 -52.97 237.42 6.35 -46.61 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: 1.26 Total: 0.41 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 1.24 Total: -22.59 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.25 Total: -39.03 kcal Atomic # 9 Polarization: -24.48 SS G_CDS: 2.17 Total: -22.30 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 35 Polarization: -2.97 SS G_CDS: -0.60 Total: -3.57 kcal Total: -52.97 6.35 -46.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036533717.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.947 kcal (2) G-P(sol) polarization free energy of solvation -52.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds