Wall clock time and date at job start Tue Mar 31 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35976 * 117.00406 * 2 1 4 4 C 1.38752 * 119.96875 * 0.02562 * 3 2 1 5 5 C 1.38225 * 120.14064 * 179.97438 * 4 3 2 6 6 C 1.38523 * 120.07118 * 359.97438 * 5 4 3 7 7 O 1.36045 * 120.02795 * 180.27946 * 6 5 4 8 8 C 1.42901 * 117.00144 * 359.72530 * 7 6 5 9 9 C 1.39348 * 119.93523 * 359.97438 * 6 5 4 10 10 N 1.39872 * 120.06609 * 180.02562 * 9 6 5 11 11 C 1.34773 * 120.00251 * 204.81057 * 10 9 6 12 12 O 1.21475 * 120.00069 * 5.53321 * 11 10 9 13 13 C 1.48723 * 119.99849 * 185.52995 * 11 10 9 14 14 O 1.21508 * 120.00305 * 0.02562 * 13 11 10 15 15 N 1.34782 * 119.99478 * 179.97438 * 13 11 10 16 16 C 1.36126 * 119.99887 * 179.97438 * 15 13 11 17 17 H 1.08008 * 119.99747 * 0.02562 * 16 15 13 18 18 C 1.39580 * 120.00086 * 180.02562 * 16 15 13 19 19 N 1.31016 * 119.99763 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99922 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46869 * 90.00162 * 20 18 16 22 22 H 1.48500 * 109.47078 * 210.00177 * 20 18 16 23 23 H 1.48493 * 109.47169 * 330.00146 * 20 18 16 24 24 C 1.38596 * 119.97273 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46839 * 59.99781 * 1 2 3 26 26 H 1.08999 * 109.47587 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47209 * 300.00493 * 1 2 3 28 28 H 1.08001 * 119.92555 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.96792 * 180.02562 * 5 4 3 30 30 H 1.08992 * 109.47600 * 59.99671 * 8 7 6 31 31 H 1.08995 * 109.47041 * 180.02562 * 8 7 6 32 32 H 1.09008 * 109.46829 * 299.99866 * 8 7 6 33 33 H 0.97010 * 119.99771 * 24.81336 * 10 9 6 34 34 H 0.96995 * 120.00266 * 0.02562 * 15 13 11 35 35 H 0.96997 * 120.00194 * 180.02562 * 19 18 16 36 36 H 1.08000 * 120.03516 * 0.03258 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2901 2.3748 0.0005 5 6 1.9140 3.6082 0.0011 6 6 3.2970 3.6865 0.0016 7 8 3.9102 4.9009 0.0079 8 6 3.0660 6.0540 0.0076 9 6 4.0595 2.5202 0.0022 10 7 5.4562 2.5960 0.0032 11 6 6.1869 1.5747 -0.4860 12 8 5.6345 0.6332 -1.0190 13 6 7.6697 1.6004 -0.3734 14 8 8.2223 2.5420 0.1601 15 7 8.4004 0.5788 -0.8622 16 6 9.7576 0.6025 -0.7597 17 1 10.2488 1.4398 -0.2862 18 6 10.5143 -0.4553 -1.2664 19 7 11.8205 -0.4326 -1.1672 20 14 9.6647 -1.9037 -2.0846 21 1 9.5211 -1.6366 -3.5383 22 1 10.4762 -3.1311 -1.8845 23 1 8.3213 -2.0948 -1.4814 24 6 3.4305 1.2833 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2117 2.3164 0.0005 29 1 1.3227 4.5119 0.0019 30 1 2.4329 6.0410 0.8947 31 1 3.6806 6.9541 0.0125 32 1 2.4407 6.0462 -0.8853 33 1 5.8989 3.3837 0.3562 34 1 7.9592 -0.1730 -1.2877 35 1 12.3465 -1.1674 -1.5196 36 1 4.0187 0.3776 -0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037242843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:16 Heat of formation + Delta-G solvation = -125.555600 kcal Electronic energy + Delta-G solvation = -23085.258674 eV Core-core repulsion = 19342.254636 eV Total energy + Delta-G solvation = -3743.004039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.20977 -41.06292 -39.94125 -39.43911 -37.47203 -36.54579 -35.50164 -33.99520 -31.54356 -30.45043 -28.37782 -27.86686 -27.73578 -25.33543 -23.50958 -22.69915 -21.39566 -20.89700 -19.85273 -18.74898 -18.62306 -17.91396 -17.51609 -17.04569 -16.93231 -16.60407 -16.40495 -16.36096 -15.67145 -15.47609 -15.21894 -14.95210 -14.74819 -14.44589 -14.22631 -13.72178 -13.66101 -13.42423 -13.11734 -12.59157 -12.56612 -12.50065 -12.40995 -12.06096 -11.94717 -11.75181 -11.69059 -11.18671 -10.51976 -10.38844 -9.54356 -8.66472 -8.62888 -6.19986 -0.11836 0.34883 0.63059 1.27908 1.32059 1.37529 1.49635 2.07961 2.15877 2.27273 2.41108 2.68631 2.96007 3.02797 3.67150 3.75404 3.94182 4.08189 4.25397 4.41743 4.46400 4.47938 4.48622 4.58514 4.70955 4.77916 4.81037 5.09326 5.13876 5.22371 5.30274 5.51261 5.68624 5.95834 6.27162 6.31497 6.50401 6.53314 6.76583 7.06897 7.54785 8.47590 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.004131 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.037937 B = 6775.597308 C = 8172.479416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.106 3.894 4 C -0.175 4.175 5 C -0.136 4.136 6 C 0.062 3.938 7 O -0.339 6.339 8 C 0.019 3.981 9 C 0.136 3.864 10 N -0.629 5.629 11 C 0.522 3.478 12 O -0.534 6.534 13 C 0.406 3.594 14 O -0.601 6.601 15 N -0.523 5.523 16 C -0.338 4.338 17 H 0.081 0.919 18 C 0.015 3.985 19 N -0.885 5.885 20 Si 0.946 3.054 21 H -0.251 1.251 22 H -0.254 1.254 23 H -0.249 1.249 24 C -0.157 4.157 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.169 0.831 29 H 0.175 0.825 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.429 0.571 34 H 0.394 0.606 35 H 0.292 0.708 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.018 5.994 1.048 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.060 3.940 4 C -0.194 4.194 5 C -0.155 4.155 6 C 0.015 3.985 7 O -0.254 6.254 8 C -0.075 4.075 9 C 0.041 3.959 10 N -0.274 5.274 11 C 0.306 3.694 12 O -0.412 6.412 13 C 0.190 3.810 14 O -0.488 6.488 15 N -0.161 5.161 16 C -0.468 4.468 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.522 5.522 20 Si 0.766 3.234 21 H -0.175 1.175 22 H -0.178 1.178 23 H -0.173 1.173 24 C -0.178 4.178 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.187 0.813 29 H 0.192 0.808 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.230 0.770 35 H 0.103 0.897 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.474 5.701 0.998 27.099 hybrid contribution 0.243 -0.343 -0.233 0.480 sum -26.231 5.358 0.766 26.783 Atomic orbital electron populations 1.23389 0.76063 1.05573 1.02660 1.86085 1.23787 1.26544 1.88984 1.18701 0.90924 0.85615 0.98718 1.21369 1.01580 0.90318 1.06147 1.21197 0.91167 0.99996 1.03165 1.18655 0.91737 0.84099 1.04023 1.86058 1.37243 1.12601 1.89458 1.23379 0.96239 0.85189 1.02694 1.17004 0.81540 0.92176 1.05166 1.42860 1.04417 1.20822 1.59257 1.20099 0.88281 0.82749 0.78247 1.90668 1.73025 1.34721 1.42744 1.19220 0.87211 0.85962 0.88559 1.90618 1.72653 1.35973 1.49588 1.41671 1.06709 1.18990 1.48757 1.19221 0.80228 1.08187 1.39146 0.90135 1.26072 0.95884 1.00646 0.96505 1.69535 1.06329 1.34131 1.42221 0.85615 0.79581 0.78151 0.80079 1.17469 1.17770 1.17289 1.20349 0.93311 0.97049 1.07122 0.91255 0.86779 0.90999 0.81337 0.80793 0.90846 0.86905 0.91228 0.73198 0.76974 0.89698 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.46 10.50 -93.27 -0.98 -9.43 16 3 C 0.11 2.83 6.68 22.48 0.15 2.98 16 4 C -0.18 -3.27 9.03 22.39 0.20 -3.07 16 5 C -0.14 -2.51 9.03 22.33 0.20 -2.31 16 6 C 0.06 1.61 6.70 22.61 0.15 1.76 16 7 O -0.34 -8.20 9.91 -94.06 -0.93 -9.13 16 8 C 0.02 0.24 9.81 113.37 1.11 1.36 16 9 C 0.14 4.52 6.44 38.25 0.25 4.77 16 10 N -0.63 -23.63 5.27 -305.06 -1.61 -25.23 16 11 C 0.52 22.82 7.67 87.05 0.67 23.49 16 12 O -0.53 -23.96 13.62 -3.64 -0.05 -24.01 16 13 C 0.41 20.63 7.81 87.05 0.68 21.31 16 14 O -0.60 -33.60 16.04 -3.74 -0.06 -33.66 16 15 N -0.52 -27.28 5.06 -308.96 -1.56 -28.84 16 16 C -0.34 -19.77 10.16 84.35 0.86 -18.92 16 17 H 0.08 5.38 7.37 -2.91 -0.02 5.35 16 18 C 0.01 0.81 5.51 85.14 0.47 1.28 16 19 N -0.89 -50.29 13.94 21.76 0.30 -49.99 16 20 Si 0.95 39.57 27.74 68.60 1.90 41.47 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.25 -9.95 6.53 99.48 0.65 -9.30 16 24 C -0.16 -5.31 8.65 22.48 0.19 -5.11 16 25 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 0.65 7.66 -2.38 -0.02 0.63 16 28 H 0.17 1.79 6.28 -2.91 -0.02 1.77 16 29 H 0.17 1.76 6.29 -2.91 -0.02 1.74 16 30 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.68 7.67 -2.38 -0.02 0.66 16 33 H 0.43 15.57 7.80 -92.70 -0.72 14.85 16 34 H 0.39 18.77 5.22 -92.71 -0.48 18.29 16 35 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 36 H 0.13 5.20 5.78 -2.91 -0.02 5.19 16 Total: -1.00 -74.67 314.08 2.96 -71.71 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.10 Total: 38.26 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 6.05 Total: 28.87 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -2.87 Total: -104.07 kcal Atomic # 8 Polarization: -74.22 SS G_CDS: -2.02 Total: -76.24 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.90 Total: 41.47 kcal Total: -74.67 2.96 -71.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.846 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds