Wall clock time and date at job start Tue Mar 31 2020 03:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86801 * 119.99849 * 2 1 4 4 H 1.48496 * 109.46828 * 239.99589 * 3 2 1 5 5 H 1.48497 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46896 * 119.99832 * 3 2 1 7 7 C 1.38806 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99843 * 180.02562 * 7 2 1 9 9 O 1.34852 * 120.00731 * 0.02562 * 7 2 1 10 10 C 1.34758 * 117.00178 * 180.02562 * 9 7 2 11 11 O 1.21530 * 120.00195 * 359.97438 * 10 9 7 12 12 C 1.47449 * 119.99678 * 179.97438 * 10 9 7 13 13 C 1.39709 * 120.19373 * 353.92251 * 12 10 9 14 14 C 1.37953 * 119.89552 * 180.30045 * 13 12 10 15 15 Cl 1.73602 * 119.85887 * 179.70373 * 14 13 12 16 16 C 1.38624 * 120.27964 * 359.67390 * 14 13 12 17 17 C 1.38115 * 120.38933 * 0.02749 * 16 14 13 18 18 C 1.38689 * 120.09570 * 359.97438 * 17 16 14 19 19 N 1.39856 * 120.13584 * 180.02562 * 18 17 16 20 20 C 1.35147 * 127.39477 * 302.60120 * 19 18 17 21 21 N 1.30720 * 107.26124 * 180.02562 * 20 19 18 22 22 N 1.28419 * 110.65299 * 0.02562 * 21 20 19 23 23 N 1.28946 * 110.22034 * 359.97438 * 22 21 20 24 24 H 0.97003 * 119.99938 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.05097 * 359.97438 * 13 12 10 26 26 H 1.07999 * 119.80279 * 180.02562 * 16 14 13 27 27 H 1.07995 * 119.94917 * 180.02562 * 17 16 14 28 28 H 1.07997 * 126.37204 * 0.05973 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0081 -1.2021 0.0005 8 1 3.0882 -1.2022 0.0010 9 8 1.3340 -2.3700 0.0005 10 6 2.0679 -3.5002 0.0016 11 8 3.2816 -3.4366 0.0021 12 6 1.3985 -4.8140 0.0023 13 6 0.0096 -4.8948 0.1296 14 6 -0.6098 -6.1274 0.1357 15 17 -2.3350 -6.2271 0.3017 16 6 0.1396 -7.2868 0.0092 17 6 1.5127 -7.2202 -0.1236 18 6 2.1517 -5.9894 -0.1317 19 7 3.5421 -5.9209 -0.2666 20 6 4.4729 -6.4985 0.5249 21 7 5.6449 -6.1791 0.0419 22 7 5.5191 -5.4391 -1.0001 23 7 4.2714 -5.2358 -1.2543 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5778 -3.9938 0.2284 26 1 -0.3533 -8.2478 0.0145 27 1 2.0895 -8.1279 -0.2221 28 1 4.2838 -7.1105 1.3943 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046303092.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:13 Heat of formation + Delta-G solvation = 59.410131 kcal Electronic energy + Delta-G solvation = -20569.194556 eV Core-core repulsion = 17035.546960 eV Total energy + Delta-G solvation = -3533.647596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 294.031 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.11879 -41.53504 -40.17684 -37.86470 -37.26799 -35.89244 -34.44659 -33.24762 -32.77936 -31.14623 -27.92048 -26.23229 -25.29757 -24.01123 -23.35380 -22.13461 -20.02415 -19.73331 -19.01443 -17.73362 -17.49936 -17.04810 -16.71855 -16.50456 -16.36177 -16.08216 -15.46975 -14.93728 -14.59401 -14.28286 -13.99223 -13.73377 -13.42080 -13.29342 -13.22022 -12.72947 -12.47199 -12.24641 -12.17512 -12.11272 -12.04397 -11.98334 -11.51357 -11.06618 -10.79996 -10.44031 -9.96025 -8.66655 -6.42280 -0.88584 -0.31681 0.18905 0.79885 0.97471 1.27685 1.27918 1.32585 1.42806 1.57400 1.97629 2.26380 2.47920 2.90481 3.23120 3.41953 3.67207 3.71339 3.74611 4.01105 4.18127 4.35031 4.39509 4.58605 4.63603 4.80040 4.96497 5.06910 5.19560 5.56003 5.69807 6.48272 6.77588 7.41432 7.56309 8.52764 Molecular weight = 294.03amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.006843 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.194696 B = 4091.079984 C = 6495.457375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.004 3.996 3 Si 1.014 2.986 4 H -0.266 1.266 5 H -0.253 1.253 6 H -0.263 1.263 7 C -0.414 4.414 8 H 0.077 0.923 9 O -0.226 6.226 10 C 0.420 3.580 11 O -0.561 6.561 12 C -0.086 4.086 13 C -0.059 4.059 14 C -0.025 4.025 15 Cl -0.041 7.041 16 C -0.048 4.048 17 C -0.069 4.069 18 C 0.152 3.848 19 N -0.328 5.328 20 C 0.246 3.754 21 N -0.362 5.362 22 N -0.077 5.077 23 N -0.067 5.067 24 H 0.283 0.717 25 H 0.136 0.864 26 H 0.203 0.797 27 H 0.199 0.801 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -18.584 3.257 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.198 4.198 3 Si 0.833 3.167 4 H -0.190 1.190 5 H -0.176 1.176 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.095 0.905 9 O -0.133 6.133 10 C 0.269 3.731 11 O -0.459 6.459 12 C -0.090 4.090 13 C -0.079 4.079 14 C -0.052 4.052 15 Cl -0.012 7.012 16 C -0.066 4.066 17 C -0.089 4.089 18 C 0.060 3.940 19 N -0.120 5.120 20 C -0.050 4.050 21 N -0.211 5.211 22 N -0.073 5.073 23 N -0.052 5.052 24 H 0.093 0.907 25 H 0.154 0.846 26 H 0.220 0.780 27 H 0.216 0.784 28 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -4.010 -17.758 2.351 18.356 hybrid contribution -0.415 1.242 0.472 1.392 sum -4.426 -16.515 2.824 17.330 Atomic orbital electron populations 1.70016 1.07416 1.29858 1.45147 1.26474 0.96914 1.01992 0.94414 0.84742 0.77781 0.74544 0.79682 1.19025 1.17627 1.18711 1.21344 0.92034 0.80885 1.54678 0.90536 1.83881 1.39770 1.13871 1.75819 1.21404 0.86086 0.86400 0.79196 1.90683 1.15845 1.88178 1.51181 1.19128 0.94060 0.89521 1.06298 1.21251 0.91793 0.98990 0.95896 1.21055 0.86778 0.94106 1.03288 1.98411 1.08554 1.98448 1.95748 1.21626 0.91810 0.98854 0.94352 1.21431 0.94686 0.94940 0.97826 1.17690 0.77825 0.94151 1.04306 1.48613 1.06927 1.35346 1.21090 1.28471 0.82440 0.96077 0.97968 1.74214 1.23751 1.15550 1.07546 1.77946 1.09994 1.09569 1.09749 1.82711 0.98590 1.13074 1.10868 0.90735 0.84581 0.78011 0.78362 0.68863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.42 13.67 21.63 0.30 -51.12 15 2 C 0.00 0.24 5.50 84.89 0.47 0.70 15 3 Si 1.01 43.95 29.55 68.60 2.03 45.98 15 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 15 5 H -0.25 -9.90 7.11 99.48 0.71 -9.19 15 6 H -0.26 -11.05 7.11 99.48 0.71 -10.35 15 7 C -0.41 -25.43 9.65 67.96 0.66 -24.78 15 8 H 0.08 4.88 6.86 -2.91 -0.02 4.86 15 9 O -0.23 -13.33 9.01 11.10 0.10 -13.23 15 10 C 0.42 21.74 7.79 70.25 0.55 22.29 15 11 O -0.56 -31.60 12.47 19.74 0.25 -31.36 15 12 C -0.09 -3.22 5.89 -20.01 -0.12 -3.34 15 13 C -0.06 -1.88 9.39 22.56 0.21 -1.67 15 14 C -0.02 -0.53 6.31 22.29 0.14 -0.39 15 15 Cl -0.04 -0.79 28.94 -2.72 -0.08 -0.87 15 16 C -0.05 -0.60 9.81 22.33 0.22 -0.38 15 17 C -0.07 -1.00 9.81 22.35 0.22 -0.78 15 18 C 0.15 4.28 6.24 38.46 0.24 4.52 15 19 N -0.33 -10.69 2.60 -190.33 -0.49 -11.18 15 20 C 0.25 6.28 12.68 180.17 2.28 8.56 15 21 N -0.36 -12.46 12.15 -60.09 -0.73 -13.19 15 22 N -0.08 -3.25 13.39 37.02 0.50 -2.75 15 23 N -0.07 -2.87 11.46 37.02 0.42 -2.44 15 24 H 0.28 14.82 8.31 -92.71 -0.77 14.05 15 25 H 0.14 5.03 7.63 -2.91 -0.02 5.01 15 26 H 0.20 0.64 8.06 -2.91 -0.02 0.62 15 27 H 0.20 1.02 8.06 -2.91 -0.02 1.00 15 28 H 0.30 2.92 8.06 -2.91 -0.02 2.90 15 Total: -1.00 -85.55 284.58 8.39 -77.16 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: 1.24 Total: -1.76 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 4.87 Total: 4.76 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -0.01 Total: -80.69 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: 0.35 Total: -44.58 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -85.55 8.39 -77.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046303092.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.569 kcal (2) G-P(sol) polarization free energy of solvation -85.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds