Wall clock time and date at job start Tue Mar 31 2020 03:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99897 * 2 1 4 4 C 1.50701 * 109.47164 * 270.00106 * 3 2 1 5 5 N 1.34777 * 119.99752 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99994 * 0.02562 * 4 3 2 7 7 C 1.34775 * 119.99920 * 180.02562 * 2 1 3 8 8 O 1.21610 * 119.99919 * 174.66079 * 7 2 1 9 9 C 1.47436 * 120.00018 * 354.65744 * 7 2 1 10 10 C 1.39677 * 120.21538 * 309.09052 * 9 7 2 11 11 C 1.37800 * 119.93714 * 179.97438 * 10 9 7 12 12 C 1.38656 * 120.38372 * 0.02562 * 11 10 9 13 13 C 1.37908 * 120.43752 * 0.02562 * 12 11 10 14 14 C 1.39113 * 120.04873 * 359.97438 * 13 12 11 15 15 S 1.76207 * 120.18847 * 180.02562 * 14 13 12 16 16 C 1.76205 * 99.99930 * 351.74181 * 15 14 13 17 17 H 1.08001 * 119.99900 * 5.06203 * 16 15 14 18 18 C 1.38804 * 120.00114 * 185.06531 * 16 15 14 19 19 N 1.31562 * 119.99669 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46952 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47105 * 119.99999 * 20 18 16 23 23 H 1.48500 * 109.46901 * 239.99698 * 20 18 16 24 24 H 1.09004 * 109.46728 * 274.36003 * 1 2 3 25 25 H 1.08996 * 109.47182 * 34.36121 * 1 2 3 26 26 H 1.09003 * 109.47227 * 154.36629 * 1 2 3 27 27 H 1.09000 * 109.47116 * 30.00060 * 3 2 1 28 28 H 1.09005 * 109.47083 * 150.00231 * 3 2 1 29 29 H 0.96991 * 120.00194 * 359.97438 * 5 4 3 30 30 H 0.97003 * 119.99754 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.03138 * 0.25246 * 10 9 7 32 32 H 1.08004 * 119.81196 * 179.97438 * 11 10 9 33 33 H 1.08002 * 119.78136 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.97469 * 179.97438 * 13 12 11 35 35 H 0.96993 * 119.99343 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 7 3.1116 2.8511 -1.6670 6 8 2.0542 1.0215 -2.3426 7 6 2.1389 -1.1672 -0.0005 8 8 3.3510 -1.1694 -0.0985 9 6 1.4065 -2.4413 0.1178 10 6 0.4752 -2.6242 1.1426 11 6 -0.2065 -3.8172 1.2475 12 6 0.0266 -4.8401 0.3409 13 6 0.9434 -4.6768 -0.6763 14 6 1.6417 -3.4799 -0.7991 15 16 2.8134 -3.2670 -2.0978 16 6 2.8637 -4.9084 -2.7367 17 1 2.1935 -5.6603 -2.3470 18 6 3.7647 -5.2351 -3.7407 19 7 4.5808 -4.3190 -4.2157 20 14 3.8175 -6.9749 -4.4185 21 1 2.8053 -7.8086 -3.7215 22 1 3.5210 -6.9486 -5.8734 23 1 5.1685 -7.5508 -4.1991 24 1 -0.3633 0.0781 1.0247 25 1 -0.3633 0.8483 -0.5800 26 1 -0.3634 -0.9265 -0.4446 27 1 1.6084 2.0283 0.5138 28 1 3.1500 1.1384 0.5138 29 1 3.4268 3.3969 -0.9298 30 1 3.2736 3.1309 -2.5816 31 1 0.2863 -1.8298 1.8494 32 1 -0.9259 -3.9566 2.0409 33 1 -0.5129 -5.7713 0.4325 34 1 1.1193 -5.4787 -1.3780 35 1 5.2106 -4.5474 -4.9171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046979395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:56 Heat of formation + Delta-G solvation = -34.994830 kcal Electronic energy + Delta-G solvation = -21143.912267 eV Core-core repulsion = 17847.588109 eV Total energy + Delta-G solvation = -3296.324158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 5.74 seconds Orbital eigenvalues (eV) -40.07580 -38.78943 -37.37189 -35.03427 -33.56493 -32.72121 -30.90624 -30.30673 -28.35332 -26.18298 -25.78992 -22.95543 -21.96477 -20.88463 -19.36598 -17.94052 -17.39396 -16.92982 -16.78600 -16.05843 -15.62252 -15.12776 -14.85492 -14.71856 -14.19909 -13.95860 -13.51518 -13.14352 -12.91512 -12.88652 -12.63006 -12.28616 -12.05700 -11.75832 -11.61606 -11.18192 -11.13186 -10.94635 -10.28757 -10.00658 -9.74752 -9.59573 -9.55212 -9.42950 -8.71734 -8.49231 -8.35345 -8.24986 -6.48443 -6.43326 -4.13407 1.68998 2.04590 2.79194 2.97474 3.12376 3.14998 3.23148 3.38675 3.44851 3.75654 4.06923 4.39730 4.87031 4.98329 5.00712 5.15379 5.18912 5.30232 5.38520 5.48042 5.62767 5.65457 5.92857 5.93094 6.16854 6.39592 6.55250 6.65559 6.85457 6.91582 7.03693 7.16486 7.37819 7.47719 7.61674 7.65110 8.19765 8.39562 8.65157 9.02712 10.62213 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.005987 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.403900 B = 4675.423148 C = 6236.752904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.604 5.604 3 C 0.100 3.900 4 C 0.493 3.507 5 N -0.861 5.861 6 O -0.515 6.515 7 C 0.574 3.426 8 O -0.512 6.512 9 C -0.162 4.162 10 C -0.065 4.065 11 C -0.182 4.182 12 C -0.080 4.080 13 C -0.153 4.153 14 C -0.048 4.048 15 S 0.114 5.886 16 C -0.569 4.569 17 H 0.095 0.905 18 C 0.079 3.921 19 N -0.858 5.858 20 Si 0.925 3.075 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.398 0.602 30 H 0.400 0.600 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.124 11.617 10.298 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.338 5.338 3 C -0.027 4.027 4 C 0.275 3.725 5 N -0.426 5.426 6 O -0.388 6.388 7 C 0.364 3.636 8 O -0.386 6.386 9 C -0.176 4.176 10 C -0.085 4.085 11 C -0.207 4.207 12 C -0.101 4.101 13 C -0.178 4.178 14 C -0.167 4.167 15 S 0.376 5.624 16 C -0.716 4.716 17 H 0.112 0.888 18 C -0.132 4.132 19 N -0.491 5.491 20 Si 0.750 3.250 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.202 1.202 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.225 0.775 30 H 0.230 0.770 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.778 12.025 8.956 16.454 hybrid contribution -0.441 -1.610 -0.082 1.671 sum -7.219 10.415 8.874 15.470 Atomic orbital electron populations 1.21812 0.79042 1.03938 1.00901 1.47362 1.06951 1.04328 1.75197 1.21183 1.00238 0.87410 0.93891 1.21370 0.77661 0.80601 0.92823 1.43852 1.61373 1.25407 1.12012 1.90838 1.49493 1.52429 1.46051 1.18395 0.87103 0.83263 0.74868 1.90802 1.13732 1.86668 1.47375 1.19034 1.03624 0.94282 1.00631 1.20878 0.94096 0.97277 0.96282 1.20633 1.03779 0.94573 1.01693 1.21068 0.96736 0.97960 0.94318 1.21402 0.98111 0.97957 1.00370 1.22905 0.99889 0.94669 0.99238 1.84219 1.40648 1.13877 1.23630 1.23631 1.25418 0.97110 1.25444 0.88781 1.25133 0.93756 0.99050 0.95237 1.70006 1.19508 1.33707 1.25851 0.86014 0.78519 0.81747 0.78742 1.19104 1.20254 1.20214 0.92781 0.91833 0.89936 0.87810 0.87032 0.77470 0.76980 0.86773 0.86981 0.86988 0.84405 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 9.17 59.85 0.55 1.62 16 2 N -0.60 -9.57 2.36 -184.22 -0.44 -10.01 16 3 C 0.10 1.24 5.87 -5.20 -0.03 1.21 16 4 C 0.49 7.27 8.17 -10.98 -0.09 7.18 16 5 N -0.86 -8.30 8.87 31.22 0.28 -8.02 16 6 O -0.51 -10.74 17.27 5.56 0.10 -10.64 16 7 C 0.57 11.88 6.60 -12.52 -0.08 11.80 16 8 O -0.51 -12.45 15.47 5.27 0.08 -12.37 16 9 C -0.16 -3.34 4.61 -104.75 -0.48 -3.83 16 10 C -0.07 -1.07 8.01 -39.20 -0.31 -1.38 16 11 C -0.18 -2.84 10.02 -39.59 -0.40 -3.24 16 12 C -0.08 -1.38 10.03 -39.55 -0.40 -1.78 16 13 C -0.15 -3.28 9.25 -39.38 -0.36 -3.64 16 14 C -0.05 -1.15 6.13 -38.39 -0.24 -1.38 16 15 S 0.11 3.23 19.78 -107.50 -2.13 1.10 16 16 C -0.57 -16.25 9.08 30.94 0.28 -15.97 16 17 H 0.09 2.53 4.86 -52.49 -0.26 2.27 16 18 C 0.08 2.24 5.49 -17.46 -0.10 2.14 16 19 N -0.86 -25.67 13.22 55.49 0.73 -24.93 16 20 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H 0.05 0.50 7.61 -51.93 -0.40 0.11 16 25 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.19 6.33 -51.93 -0.33 0.86 16 27 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.11 1.36 7.50 -51.93 -0.39 0.97 16 29 H 0.40 2.21 8.83 -40.82 -0.36 1.85 16 30 H 0.40 3.71 8.93 -40.82 -0.36 3.35 16 31 H 0.11 1.50 7.14 -52.49 -0.37 1.12 16 32 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.14 3.08 4.99 -52.49 -0.26 2.82 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -38.19 317.06 -6.83 -45.02 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.55 Total: 6.10 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.66 Total: -7.27 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.58 Total: -42.96 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.18 Total: -23.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.13 Total: 1.10 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -38.19 -6.83 -45.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046979395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.026 kcal (2) G-P(sol) polarization free energy of solvation -38.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.74 seconds