Wall clock time and date at job start Tue Mar 31 2020 03:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99897 * 2 1 4 4 C 1.50701 * 109.47164 * 270.00106 * 3 2 1 5 5 N 1.34777 * 119.99752 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99994 * 0.02562 * 4 3 2 7 7 C 1.34775 * 119.99920 * 180.02562 * 2 1 3 8 8 O 1.21610 * 119.99919 * 174.66079 * 7 2 1 9 9 C 1.47436 * 120.00018 * 354.65744 * 7 2 1 10 10 C 1.39677 * 120.21538 * 309.09052 * 9 7 2 11 11 C 1.37800 * 119.93714 * 179.97438 * 10 9 7 12 12 C 1.38656 * 120.38372 * 0.02562 * 11 10 9 13 13 C 1.37908 * 120.43752 * 0.02562 * 12 11 10 14 14 C 1.39113 * 120.04873 * 359.97438 * 13 12 11 15 15 S 1.76207 * 120.18847 * 180.02562 * 14 13 12 16 16 C 1.76205 * 99.99930 * 351.74181 * 15 14 13 17 17 H 1.08001 * 119.99900 * 5.06203 * 16 15 14 18 18 C 1.38804 * 120.00114 * 185.06531 * 16 15 14 19 19 N 1.31562 * 119.99669 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46952 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47105 * 119.99999 * 20 18 16 23 23 H 1.48500 * 109.46901 * 239.99698 * 20 18 16 24 24 H 1.09004 * 109.46728 * 274.36003 * 1 2 3 25 25 H 1.08996 * 109.47182 * 34.36121 * 1 2 3 26 26 H 1.09003 * 109.47227 * 154.36629 * 1 2 3 27 27 H 1.09000 * 109.47116 * 30.00060 * 3 2 1 28 28 H 1.09005 * 109.47083 * 150.00231 * 3 2 1 29 29 H 0.96991 * 120.00194 * 359.97438 * 5 4 3 30 30 H 0.97003 * 119.99754 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.03138 * 0.25246 * 10 9 7 32 32 H 1.08004 * 119.81196 * 179.97438 * 11 10 9 33 33 H 1.08002 * 119.78136 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.97469 * 179.97438 * 13 12 11 35 35 H 0.96993 * 119.99343 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 7 3.1116 2.8511 -1.6670 6 8 2.0542 1.0215 -2.3426 7 6 2.1389 -1.1672 -0.0005 8 8 3.3510 -1.1694 -0.0985 9 6 1.4065 -2.4413 0.1178 10 6 0.4752 -2.6242 1.1426 11 6 -0.2065 -3.8172 1.2475 12 6 0.0266 -4.8401 0.3409 13 6 0.9434 -4.6768 -0.6763 14 6 1.6417 -3.4799 -0.7991 15 16 2.8134 -3.2670 -2.0978 16 6 2.8637 -4.9084 -2.7367 17 1 2.1935 -5.6603 -2.3470 18 6 3.7647 -5.2351 -3.7407 19 7 4.5808 -4.3190 -4.2157 20 14 3.8175 -6.9749 -4.4185 21 1 2.8053 -7.8086 -3.7215 22 1 3.5210 -6.9486 -5.8734 23 1 5.1685 -7.5508 -4.1991 24 1 -0.3633 0.0781 1.0247 25 1 -0.3633 0.8483 -0.5800 26 1 -0.3634 -0.9265 -0.4446 27 1 1.6084 2.0283 0.5138 28 1 3.1500 1.1384 0.5138 29 1 3.4268 3.3969 -0.9298 30 1 3.2736 3.1309 -2.5816 31 1 0.2863 -1.8298 1.8494 32 1 -0.9259 -3.9566 2.0409 33 1 -0.5129 -5.7713 0.4325 34 1 1.1193 -5.4787 -1.3780 35 1 5.2106 -4.5474 -4.9171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046979395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:50 Heat of formation + Delta-G solvation = -66.205951 kcal Electronic energy + Delta-G solvation = -21145.265682 eV Core-core repulsion = 17847.588109 eV Total energy + Delta-G solvation = -3297.677574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.43367 -40.12754 -38.87699 -36.39400 -34.81348 -34.66670 -32.36035 -31.84174 -29.45486 -27.92358 -27.36565 -24.38932 -23.47461 -22.12438 -20.81910 -19.71224 -18.54399 -18.31414 -17.96302 -17.60062 -17.14436 -16.87965 -16.29492 -16.01979 -15.63531 -15.35762 -15.05318 -14.63547 -14.44727 -14.37939 -13.84124 -13.67342 -13.40454 -13.23713 -13.01811 -12.86693 -12.81039 -12.61008 -12.05335 -11.49540 -11.42552 -11.29168 -11.08832 -10.63923 -10.50794 -10.27209 -9.79169 -9.64829 -8.51222 -8.49681 -6.29572 0.17665 0.53790 1.23705 1.34659 1.44477 1.57325 1.62776 1.68814 2.07828 2.18310 2.74224 2.82263 2.96420 3.17222 3.66502 4.04666 4.08938 4.23870 4.26896 4.30878 4.39652 4.63132 4.63790 4.75532 4.84776 4.95722 5.11204 5.35375 5.44448 5.50679 5.57401 5.67720 5.91435 6.07547 6.16116 6.30154 6.49900 6.90444 7.18102 7.40931 8.58265 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.005987 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.403900 B = 4675.423148 C = 6236.752904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.597 5.597 3 C 0.096 3.904 4 C 0.485 3.515 5 N -0.835 5.835 6 O -0.589 6.589 7 C 0.563 3.437 8 O -0.565 6.565 9 C -0.166 4.166 10 C -0.057 4.057 11 C -0.148 4.148 12 C -0.075 4.075 13 C -0.172 4.172 14 C -0.070 4.070 15 S -0.016 6.016 16 C -0.574 4.574 17 H 0.101 0.899 18 C 0.016 3.984 19 N -0.908 5.908 20 Si 1.004 2.996 21 H -0.253 1.253 22 H -0.269 1.269 23 H -0.270 1.270 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.167 0.833 28 H 0.113 0.887 29 H 0.421 0.579 30 H 0.403 0.597 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.151 0.849 34 H 0.118 0.882 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 11.886 13.981 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.329 5.329 3 C -0.030 4.030 4 C 0.269 3.731 5 N -0.401 5.401 6 O -0.469 6.469 7 C 0.352 3.648 8 O -0.443 6.443 9 C -0.179 4.179 10 C -0.076 4.076 11 C -0.170 4.170 12 C -0.095 4.095 13 C -0.197 4.197 14 C -0.187 4.187 15 S 0.240 5.760 16 C -0.720 4.720 17 H 0.118 0.882 18 C -0.189 4.189 19 N -0.543 5.543 20 Si 0.824 3.176 21 H -0.176 1.176 22 H -0.194 1.194 23 H -0.195 1.195 24 H 0.121 0.879 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.185 0.815 28 H 0.131 0.869 29 H 0.253 0.747 30 H 0.234 0.766 31 H 0.179 0.821 32 H 0.187 0.813 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.107 12.386 12.758 20.453 hybrid contribution 0.320 -1.491 -0.908 1.775 sum -9.787 10.895 11.850 18.839 Atomic orbital electron populations 1.22095 0.76777 1.03449 1.03947 1.47416 1.08464 1.04077 1.72979 1.21592 1.01387 0.87257 0.92725 1.21908 0.77126 0.80886 0.93193 1.43647 1.59180 1.23998 1.13258 1.90825 1.52969 1.54884 1.48181 1.18600 0.86651 0.84770 0.74769 1.90768 1.15991 1.87566 1.50017 1.19440 1.03964 0.93718 1.00735 1.21417 0.92042 0.99154 0.95024 1.21349 1.02189 0.92574 1.00904 1.21520 0.95064 1.00259 0.92659 1.21424 0.99651 0.96744 1.01862 1.22755 0.99845 0.97043 0.99065 1.84389 1.46386 1.16061 1.29154 1.23858 1.25766 0.96716 1.25698 0.88156 1.26306 0.93134 1.03972 0.95455 1.70178 1.20871 1.36285 1.26996 0.84835 0.78957 0.75650 0.78114 1.17649 1.19381 1.19459 0.87891 0.90346 0.92343 0.81522 0.86941 0.74749 0.76611 0.82066 0.81265 0.83095 0.86457 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.71 9.17 127.77 1.17 2.88 16 2 N -0.60 -18.06 2.36 -855.02 -2.02 -20.08 16 3 C 0.10 2.19 5.87 85.63 0.50 2.70 16 4 C 0.48 14.30 8.17 87.66 0.72 15.01 16 5 N -0.84 -15.35 8.87 -173.53 -1.54 -16.89 16 6 O -0.59 -25.94 17.27 -3.02 -0.05 -26.00 16 7 C 0.56 23.65 6.60 86.67 0.57 24.23 16 8 O -0.56 -29.12 15.47 -4.06 -0.06 -29.19 16 9 C -0.17 -6.82 4.61 -19.95 -0.09 -6.91 16 10 C -0.06 -1.60 8.01 22.51 0.18 -1.42 16 11 C -0.15 -3.68 10.02 22.27 0.22 -3.46 16 12 C -0.07 -2.31 10.03 22.29 0.22 -2.08 16 13 C -0.17 -7.43 9.25 22.40 0.21 -7.22 16 14 C -0.07 -3.49 6.13 23.04 0.14 -3.34 16 15 S -0.02 -0.99 19.78 -56.49 -1.12 -2.11 16 16 C -0.57 -35.10 9.08 67.96 0.62 -34.48 16 17 H 0.10 5.74 4.86 -2.91 -0.01 5.72 16 18 C 0.02 0.98 5.49 84.87 0.47 1.45 16 19 N -0.91 -58.34 13.22 21.65 0.29 -58.05 16 20 Si 1.00 45.55 29.55 68.60 2.03 47.58 16 21 H -0.25 -10.71 7.11 99.48 0.71 -10.01 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H 0.10 1.26 7.61 -2.39 -0.02 1.24 16 25 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 26 H 0.06 1.57 6.33 -2.39 -0.02 1.55 16 27 H 0.17 1.63 8.07 -2.39 -0.02 1.61 16 28 H 0.11 2.61 7.50 -2.38 -0.02 2.59 16 29 H 0.42 3.75 8.83 -92.72 -0.82 2.93 16 30 H 0.40 7.39 8.93 -92.71 -0.83 6.56 16 31 H 0.16 3.09 7.14 -2.91 -0.02 3.07 16 32 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 33 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.12 5.48 4.99 -2.91 -0.01 5.46 16 35 H 0.28 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -97.73 317.06 1.97 -95.76 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.48 Total: 21.63 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 4.93 Total: -12.65 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -3.27 Total: -95.02 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -0.11 Total: -55.18 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -1.12 Total: -2.11 kcal Total: -97.73 1.97 -95.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046979395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.551 kcal (2) G-P(sol) polarization free energy of solvation -97.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds