Wall clock time and date at job start Tue Mar 31 2020 03:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29308 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48499 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47128 * 300.00137 * 3 2 1 6 6 H 1.48502 * 109.47233 * 59.99979 * 3 2 1 7 7 C 1.46789 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00427 * 169.08881 * 7 2 1 9 9 N 1.33320 * 119.99811 * 349.09279 * 7 2 1 10 10 C 1.34782 * 119.99679 * 313.30014 * 9 7 2 11 11 O 1.21483 * 120.00164 * 3.43831 * 10 9 7 12 12 C 1.47532 * 119.99794 * 183.44064 * 10 9 7 13 13 C 1.39757 * 120.17686 * 316.88494 * 12 10 9 14 14 C 1.37825 * 119.87092 * 180.29326 * 13 12 10 15 15 C 1.38498 * 120.22524 * 359.45627 * 14 13 12 16 16 N 1.48018 * 119.81952 * 180.27761 * 15 14 13 17 17 O 1.31701 * 119.99830 * 359.97438 * 16 15 14 18 18 O 1.31694 * 120.00196 * 179.97438 * 16 15 14 19 19 C 1.38213 * 120.36021 * 0.24887 * 15 14 13 20 20 C 1.38311 * 120.12344 * 0.02562 * 19 15 14 21 21 F 1.35100 * 120.11435 * 179.97438 * 20 19 15 22 22 C 1.46496 * 120.00373 * 133.29776 * 9 7 2 23 23 C 1.53002 * 117.49532 * 2.33644 * 22 9 7 24 24 C 1.53002 * 117.50082 * 293.67632 * 22 9 7 25 25 H 0.96997 * 120.00614 * 5.02257 * 1 2 3 26 26 H 1.07996 * 120.06817 * 0.02634 * 13 12 10 27 27 H 1.07997 * 119.89081 * 179.73047 * 14 13 12 28 28 H 1.07995 * 119.94182 * 180.02562 * 19 15 14 29 29 H 1.09000 * 115.55445 * 147.99981 * 22 9 7 30 30 H 1.08993 * 117.50036 * 359.97438 * 23 22 9 31 31 H 1.09002 * 117.49718 * 145.01736 * 23 22 9 32 32 H 1.08996 * 117.50122 * 214.97688 * 24 22 9 33 33 H 1.09002 * 117.49771 * 359.97331 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2271 1.6178 0.0000 4 1 3.6871 1.3465 -0.0006 5 1 1.8683 2.3965 -1.2125 6 1 1.8683 2.3965 1.2125 7 6 2.0271 -1.2712 -0.0006 8 1 3.0925 -1.2795 -0.1776 9 7 1.3786 -2.4155 0.2174 10 6 0.5030 -2.5100 1.2377 11 8 0.2579 -1.5352 1.9200 12 6 -0.1577 -3.7972 1.5258 13 6 -0.6554 -4.5808 0.4811 14 6 -1.2769 -5.7794 0.7578 15 6 -1.3997 -6.2152 2.0667 16 7 -2.0633 -7.5068 2.3533 17 8 -2.5355 -8.2381 1.3649 18 8 -2.1816 -7.9249 3.5965 19 6 -0.9055 -5.4507 3.1068 20 6 -0.2842 -4.2428 2.8462 21 9 0.1984 -3.4955 3.8630 22 6 1.6177 -3.5700 -0.6520 23 6 2.6632 -3.4166 -1.7585 24 6 1.1744 -3.4587 -2.1122 25 1 -0.4851 0.8367 -0.0735 26 1 -0.5571 -4.2457 -0.5409 27 1 -1.6655 -6.3831 -0.0489 28 1 -1.0046 -5.7972 4.1248 29 1 1.5315 -4.5453 -0.1729 30 1 3.1728 -2.4566 -1.8398 31 1 3.2645 -4.2910 -2.0075 32 1 0.7969 -4.3607 -2.5937 33 1 0.7045 -2.5265 -2.4258 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049425857.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:50 Heat of formation + Delta-G solvation = 27.407090 kcal Electronic energy + Delta-G solvation = -23511.722858 eV Core-core repulsion = 19651.891474 eV Total energy + Delta-G solvation = -3859.831384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.085 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -48.70497 -40.12985 -39.02601 -37.59515 -36.31713 -34.28257 -33.34381 -32.10363 -31.36962 -30.78847 -27.17713 -25.11672 -23.19605 -22.70926 -22.00613 -21.38696 -20.08801 -18.73630 -18.04221 -17.58876 -16.65678 -16.15962 -16.04573 -15.96597 -15.53108 -15.21174 -14.90816 -14.39162 -14.04894 -13.90377 -13.23213 -13.20907 -12.66714 -12.45427 -12.20408 -11.86122 -11.47997 -11.37123 -11.22464 -11.17674 -11.00471 -10.76342 -10.59017 -10.57695 -10.23332 -10.09023 -9.34476 -9.24063 -8.98542 -8.52851 -7.61168 -6.71388 -4.15591 -0.72375 0.95361 1.03384 1.24309 2.96508 3.06031 3.09369 3.11776 3.82091 3.88065 4.07023 4.28828 4.35869 4.48232 4.62046 4.75739 4.93397 5.00156 5.11064 5.29452 5.44989 5.54890 5.59110 5.73625 5.86815 5.94398 6.01941 6.08471 6.16308 6.49455 6.57585 6.67005 6.91648 6.94710 7.69049 8.30834 8.71510 9.04949 9.85762 10.27148 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.004998 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.783873 B = 5600.608225 C = 6364.734188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.067 3.933 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.340 4.340 8 H 0.096 0.904 9 N -0.380 5.380 10 C 0.471 3.529 11 O -0.514 6.514 12 C -0.067 4.067 13 C -0.089 4.089 14 C -0.062 4.062 15 C -0.003 4.003 16 N -0.005 5.005 17 O -0.189 6.189 18 O -0.194 6.194 19 C -0.095 4.095 20 C 0.127 3.873 21 F -0.110 7.110 22 C 0.047 3.953 23 C -0.173 4.173 24 C -0.194 4.194 25 H 0.281 0.719 26 H 0.163 0.837 27 H 0.157 0.843 28 H 0.162 0.838 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 -6.329 -3.012 7.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.156 4.156 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.113 0.887 9 N -0.095 5.095 10 C 0.263 3.737 11 O -0.392 6.392 12 C -0.074 4.074 13 C -0.109 4.109 14 C -0.081 4.081 15 C -0.092 4.092 16 N 0.466 4.534 17 O -0.378 6.378 18 O -0.381 6.381 19 C -0.116 4.116 20 C 0.105 3.895 21 F -0.088 7.088 22 C -0.058 4.058 23 C -0.211 4.211 24 C -0.233 4.233 25 H 0.093 0.907 26 H 0.180 0.820 27 H 0.174 0.826 28 H 0.179 0.821 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.420 -5.148 -2.645 5.960 hybrid contribution 0.040 0.393 0.210 0.448 sum 1.460 -4.755 -2.435 5.538 Atomic orbital electron populations 1.68832 1.08375 1.29797 1.31965 1.27118 0.94587 1.00328 0.93553 0.85951 0.80415 0.80615 0.78237 1.18517 1.20332 1.19966 1.20220 0.92336 0.82309 1.51974 0.88656 1.41730 1.37839 1.09257 1.20717 1.17548 0.86867 0.86280 0.83043 1.90685 1.63150 1.36129 1.49228 1.21246 0.96041 0.98328 0.91760 1.21523 0.96529 0.92238 1.00646 1.21013 0.96422 0.96400 0.94299 1.19827 1.08220 0.85634 0.95481 1.50323 0.97909 1.02613 1.02540 1.96242 1.51739 1.54950 1.34870 1.96251 1.64744 1.77161 0.99981 1.20694 0.97256 0.92912 1.00723 1.17130 0.98553 0.89407 0.84415 1.91601 1.85132 1.74934 1.57157 1.22166 1.04982 0.91759 0.86847 1.23152 0.92094 1.03535 1.02290 1.23347 0.97952 1.03187 0.98814 0.90702 0.81968 0.82585 0.82067 0.87185 0.87338 0.89350 0.89309 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.51 11.41 56.00 0.64 -18.87 16 2 C 0.07 1.61 4.76 -15.16 -0.07 1.53 16 3 Si 0.92 18.70 29.66 -169.99 -5.04 13.65 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.34 -7.99 8.17 -13.45 -0.11 -8.10 16 8 H 0.10 2.14 7.16 -52.49 -0.38 1.77 16 9 N -0.38 -8.30 2.77 -107.36 -0.30 -8.60 16 10 C 0.47 11.01 6.48 -12.47 -0.08 10.93 16 11 O -0.51 -14.21 13.89 5.38 0.07 -14.14 16 12 C -0.07 -1.26 5.19 -104.91 -0.54 -1.81 16 13 C -0.09 -1.36 7.61 -39.16 -0.30 -1.66 16 14 C -0.06 -0.84 9.56 -39.64 -0.38 -1.22 16 15 C 0.00 -0.04 6.89 -79.86 -0.55 -0.59 16 16 N 0.00 -0.08 4.98 34.01 0.17 0.09 16 17 O -0.19 -3.19 19.13 -31.57 -0.60 -3.80 16 18 O -0.19 -3.37 19.13 -31.56 -0.60 -3.97 16 19 C -0.10 -1.46 9.54 -39.56 -0.38 -1.84 16 20 C 0.13 2.27 7.25 -38.92 -0.28 1.98 16 21 F -0.11 -2.17 16.35 2.25 0.04 -2.13 16 22 C 0.05 0.80 4.38 -67.93 -0.30 0.50 16 23 C -0.17 -2.55 9.79 -26.69 -0.26 -2.81 16 24 C -0.19 -2.87 9.33 -26.69 -0.25 -3.12 16 25 H 0.28 6.73 8.27 -40.82 -0.34 6.39 16 26 H 0.16 2.32 5.58 -52.49 -0.29 2.03 16 27 H 0.16 1.77 7.56 -52.49 -0.40 1.37 16 28 H 0.16 2.21 7.56 -52.49 -0.40 1.81 16 29 H 0.11 1.64 6.28 -51.93 -0.33 1.32 16 30 H 0.11 1.75 6.65 -51.93 -0.35 1.41 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -28.75 301.08 -7.13 -35.87 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -2.53 Total: 3.55 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -3.50 Total: -6.20 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.51 Total: -27.38 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -1.13 Total: -21.90 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.04 Total: 13.65 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.75 -7.13 -35.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049425857.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.282 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds