Wall clock time and date at job start Tue Mar 31 2020 03:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29308 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48499 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47128 * 300.00137 * 3 2 1 6 6 H 1.48502 * 109.47233 * 59.99979 * 3 2 1 7 7 C 1.46789 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00427 * 169.08881 * 7 2 1 9 9 N 1.33320 * 119.99811 * 349.09279 * 7 2 1 10 10 C 1.34782 * 119.99679 * 313.30014 * 9 7 2 11 11 O 1.21483 * 120.00164 * 3.43831 * 10 9 7 12 12 C 1.47532 * 119.99794 * 183.44064 * 10 9 7 13 13 C 1.39757 * 120.17686 * 316.88494 * 12 10 9 14 14 C 1.37825 * 119.87092 * 180.29326 * 13 12 10 15 15 C 1.38498 * 120.22524 * 359.45627 * 14 13 12 16 16 N 1.48018 * 119.81952 * 180.27761 * 15 14 13 17 17 O 1.31701 * 119.99830 * 359.97438 * 16 15 14 18 18 O 1.31694 * 120.00196 * 179.97438 * 16 15 14 19 19 C 1.38213 * 120.36021 * 0.24887 * 15 14 13 20 20 C 1.38311 * 120.12344 * 0.02562 * 19 15 14 21 21 F 1.35100 * 120.11435 * 179.97438 * 20 19 15 22 22 C 1.46496 * 120.00373 * 133.29776 * 9 7 2 23 23 C 1.53002 * 117.49532 * 2.33644 * 22 9 7 24 24 C 1.53002 * 117.50082 * 293.67632 * 22 9 7 25 25 H 0.96997 * 120.00614 * 5.02257 * 1 2 3 26 26 H 1.07996 * 120.06817 * 0.02634 * 13 12 10 27 27 H 1.07997 * 119.89081 * 179.73047 * 14 13 12 28 28 H 1.07995 * 119.94182 * 180.02562 * 19 15 14 29 29 H 1.09000 * 115.55445 * 147.99981 * 22 9 7 30 30 H 1.08993 * 117.50036 * 359.97438 * 23 22 9 31 31 H 1.09002 * 117.49718 * 145.01736 * 23 22 9 32 32 H 1.08996 * 117.50122 * 214.97688 * 24 22 9 33 33 H 1.09002 * 117.49771 * 359.97331 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2271 1.6178 0.0000 4 1 3.6871 1.3465 -0.0006 5 1 1.8683 2.3965 -1.2125 6 1 1.8683 2.3965 1.2125 7 6 2.0271 -1.2712 -0.0006 8 1 3.0925 -1.2795 -0.1776 9 7 1.3786 -2.4155 0.2174 10 6 0.5030 -2.5100 1.2377 11 8 0.2579 -1.5352 1.9200 12 6 -0.1577 -3.7972 1.5258 13 6 -0.6554 -4.5808 0.4811 14 6 -1.2769 -5.7794 0.7578 15 6 -1.3997 -6.2152 2.0667 16 7 -2.0633 -7.5068 2.3533 17 8 -2.5355 -8.2381 1.3649 18 8 -2.1816 -7.9249 3.5965 19 6 -0.9055 -5.4507 3.1068 20 6 -0.2842 -4.2428 2.8462 21 9 0.1984 -3.4955 3.8630 22 6 1.6177 -3.5700 -0.6520 23 6 2.6632 -3.4166 -1.7585 24 6 1.1744 -3.4587 -2.1122 25 1 -0.4851 0.8367 -0.0735 26 1 -0.5571 -4.2457 -0.5409 27 1 -1.6655 -6.3831 -0.0489 28 1 -1.0046 -5.7972 4.1248 29 1 1.5315 -4.5453 -0.1729 30 1 3.1728 -2.4566 -1.8398 31 1 3.2645 -4.2910 -2.0075 32 1 0.7969 -4.3607 -2.5937 33 1 0.7045 -2.5265 -2.4258 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049425857.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:49 Heat of formation + Delta-G solvation = 11.212231 kcal Electronic energy + Delta-G solvation = -23512.425120 eV Core-core repulsion = 19651.891474 eV Total energy + Delta-G solvation = -3860.533645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.085 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.20297 -41.56210 -40.48640 -38.98636 -37.83718 -35.66256 -34.95845 -33.62730 -32.86746 -32.14534 -28.62769 -26.67830 -24.54676 -24.14874 -23.23221 -22.73265 -21.60732 -20.11582 -19.40609 -19.14515 -18.13232 -17.59137 -17.44016 -17.38352 -17.05737 -16.73461 -16.35377 -15.80239 -15.53139 -15.33261 -14.69734 -14.65734 -14.11321 -13.90293 -13.71086 -13.25158 -13.03206 -12.89169 -12.77163 -12.55868 -12.37447 -12.17451 -12.05319 -11.93720 -11.60202 -11.31998 -10.91336 -10.74406 -10.34924 -10.24834 -9.22782 -8.40298 -5.97583 -2.03251 -0.38831 -0.29919 -0.13926 1.33952 1.41131 1.49624 1.70718 2.21498 2.35008 2.65265 2.77486 2.93271 3.13906 3.24871 3.36898 3.56599 3.63453 3.80613 4.07198 4.21809 4.28024 4.35164 4.40484 4.55742 4.63166 4.77914 4.92571 4.99679 5.17309 5.24557 5.29591 5.51572 5.51651 6.03002 6.65013 7.09386 7.44279 8.20273 8.60565 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.004998 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.783873 B = 5600.608225 C = 6364.734188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.027 3.973 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.293 1.293 7 C -0.385 4.385 8 H 0.091 0.909 9 N -0.390 5.390 10 C 0.460 3.540 11 O -0.572 6.572 12 C -0.079 4.079 13 C -0.070 4.070 14 C -0.034 4.034 15 C 0.008 3.992 16 N -0.010 5.010 17 O -0.159 6.159 18 O -0.205 6.205 19 C -0.078 4.078 20 C 0.114 3.886 21 F -0.127 7.127 22 C 0.023 3.977 23 C -0.163 4.163 24 C -0.178 4.178 25 H 0.274 0.726 26 H 0.177 0.823 27 H 0.197 0.803 28 H 0.181 0.819 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -10.371 -4.119 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.190 4.190 3 Si 0.799 3.201 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.219 1.219 7 C -0.513 4.513 8 H 0.109 0.891 9 N -0.105 5.105 10 C 0.251 3.749 11 O -0.455 6.455 12 C -0.085 4.085 13 C -0.089 4.089 14 C -0.053 4.053 15 C -0.079 4.079 16 N 0.467 4.533 17 O -0.357 6.357 18 O -0.390 6.390 19 C -0.098 4.098 20 C 0.092 3.908 21 F -0.105 7.105 22 C -0.081 4.081 23 C -0.201 4.201 24 C -0.216 4.216 25 H 0.086 0.914 26 H 0.195 0.805 27 H 0.214 0.786 28 H 0.198 0.802 29 H 0.150 0.850 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.706 -9.173 -3.741 9.932 hybrid contribution 0.029 1.062 0.688 1.266 sum 0.735 -8.111 -3.053 8.698 Atomic orbital electron populations 1.68920 1.09606 1.29625 1.36156 1.27804 0.95093 1.03037 0.93023 0.85179 0.79824 0.77555 0.77582 1.17549 1.19086 1.21923 1.20132 0.92332 0.83339 1.55520 0.89114 1.41776 1.37082 1.10220 1.21379 1.18187 0.86883 0.87056 0.82784 1.90626 1.64976 1.38690 1.51191 1.21125 0.97214 0.96828 0.93317 1.21625 0.95144 0.91869 1.00256 1.21355 0.93928 0.95435 0.94593 1.20035 1.06907 0.84942 0.96061 1.50451 0.97632 1.02672 1.02577 1.96250 1.50179 1.54594 1.34698 1.96289 1.65355 1.77406 0.99999 1.20763 0.95566 0.91500 1.01999 1.17316 0.99409 0.90244 0.83803 1.91563 1.85567 1.75609 1.57787 1.22417 1.07552 0.90835 0.87254 1.23216 0.92340 1.03957 1.00545 1.23337 0.97852 1.03514 0.96881 0.91440 0.80545 0.78585 0.80217 0.84950 0.89600 0.85708 0.84980 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.77 11.41 23.26 0.27 -44.50 16 2 C 0.03 1.41 4.76 87.30 0.42 1.83 16 3 Si 0.98 41.06 29.66 68.60 2.03 43.09 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.38 -19.20 8.17 86.70 0.71 -18.49 16 8 H 0.09 4.38 7.16 -2.91 -0.02 4.36 16 9 N -0.39 -17.62 2.77 -611.89 -1.70 -19.32 16 10 C 0.46 22.26 6.48 86.69 0.56 22.82 16 11 O -0.57 -33.67 13.89 -3.66 -0.05 -33.72 16 12 C -0.08 -2.91 5.19 -20.05 -0.10 -3.01 16 13 C -0.07 -1.87 7.61 22.54 0.17 -1.70 16 14 C -0.03 -0.74 9.56 22.23 0.21 -0.52 16 15 C 0.01 0.20 6.89 36.43 0.25 0.45 16 16 N -0.01 -0.27 4.98 -46.33 -0.23 -0.51 16 17 O -0.16 -4.37 19.13 3.51 0.07 -4.30 16 18 O -0.20 -6.25 19.13 3.52 0.07 -6.18 16 19 C -0.08 -2.15 9.54 22.28 0.21 -1.94 16 20 C 0.11 3.94 7.25 22.70 0.16 4.10 16 21 F -0.13 -5.09 16.35 44.97 0.74 -4.35 16 22 C 0.02 0.76 4.38 44.99 0.20 0.95 16 23 C -0.16 -4.55 9.79 30.62 0.30 -4.25 16 24 C -0.18 -4.88 9.33 30.62 0.29 -4.60 16 25 H 0.27 14.30 8.27 -92.71 -0.77 13.53 16 26 H 0.18 4.39 5.58 -2.91 -0.02 4.37 16 27 H 0.20 2.89 7.56 -2.91 -0.02 2.87 16 28 H 0.18 4.31 7.56 -2.91 -0.02 4.29 16 29 H 0.13 3.56 6.28 -2.39 -0.01 3.55 16 30 H 0.09 2.82 6.65 -2.39 -0.02 2.81 16 31 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -68.08 301.08 5.75 -62.33 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.18 Total: 11.83 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 3.38 Total: -4.36 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -1.66 Total: -64.33 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: 0.08 Total: -44.21 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.74 Total: -4.35 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -68.08 5.75 -62.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049425857.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.545 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds