Wall clock time and date at job start Tue Mar 31 2020 03:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.38809 * 123.64922 * 68.36698 * 3 2 1 5 5 C 1.33340 * 115.05998 * 179.97438 * 4 3 2 6 6 S 1.70518 * 111.43455 * 359.97438 * 5 4 3 7 7 C 1.38226 * 123.64634 * 248.36878 * 3 2 1 8 8 C 1.46540 * 125.50209 * 359.95990 * 7 3 2 9 9 O 1.21606 * 120.00024 * 0.02562 * 8 7 3 10 10 O 1.34897 * 119.99976 * 180.02562 * 8 7 3 11 11 C 1.45204 * 116.99773 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46797 * 180.02562 * 11 10 8 13 13 O 1.21278 * 120.00045 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99750 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00052 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47176 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00183 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99945 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99868 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47133 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47321 * 119.99884 * 20 18 16 23 23 H 1.48501 * 109.47025 * 239.99844 * 20 18 16 24 24 H 1.07998 * 122.46647 * 0.02562 * 4 3 2 25 25 H 1.08009 * 124.28284 * 180.26377 * 5 4 3 26 26 H 1.08999 * 109.47343 * 300.00228 * 11 10 8 27 27 H 1.09004 * 109.46838 * 60.00529 * 11 10 8 28 28 H 0.97002 * 119.99795 * 0.02562 * 14 12 11 29 29 H 1.08999 * 109.47191 * 300.00449 * 15 14 12 30 30 H 1.09010 * 109.47057 * 60.00270 * 15 14 12 31 31 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3373 -0.4250 -1.0741 5 6 4.6557 -0.3505 -0.8892 6 16 5.0345 0.2637 0.6557 7 6 3.3336 0.4252 1.0697 8 6 2.8118 0.9305 2.3423 9 8 1.6112 1.0015 2.5220 10 8 3.6633 1.3169 3.3146 11 6 3.0758 1.8065 4.5490 12 6 4.1720 2.1891 5.5098 13 8 5.3339 2.0623 5.1859 14 7 3.8612 2.6733 6.7286 15 6 4.9268 3.0448 7.6627 16 6 4.3172 3.5529 8.9438 17 1 3.2434 3.5946 9.0515 18 6 5.1303 3.9647 9.9784 19 7 6.4379 3.9144 9.8470 20 14 4.3746 4.5939 11.5666 21 1 2.8940 4.5507 11.4614 22 1 4.8162 3.7389 12.6976 23 1 4.8130 5.9929 11.8031 24 1 2.9002 -0.7889 -1.9922 25 1 5.3907 -0.6381 -1.6266 26 1 2.4584 2.6792 4.3366 27 1 2.4595 1.0247 4.9931 28 1 2.9319 2.7751 6.9874 29 1 5.5440 2.1719 7.8756 30 1 5.5435 3.8262 7.2184 31 1 7.0099 4.2038 10.5750 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052226926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:27 Heat of formation + Delta-G solvation = -54.467704 kcal Electronic energy + Delta-G solvation = -19369.117291 eV Core-core repulsion = 15936.115632 eV Total energy + Delta-G solvation = -3433.001660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.051 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.73815 -39.10526 -38.49303 -36.42645 -36.20240 -34.30221 -32.45471 -31.04991 -29.27603 -27.15640 -26.16641 -22.95667 -22.18689 -21.59973 -20.02387 -19.26020 -17.96115 -17.17014 -16.87152 -16.82403 -15.86811 -15.38842 -15.13581 -14.97057 -14.88590 -14.29610 -14.22715 -13.75552 -13.17981 -13.12649 -13.08841 -12.77952 -12.63341 -12.47174 -12.04148 -11.83770 -11.44171 -11.02873 -10.98134 -10.95453 -10.84163 -10.37435 -9.55030 -9.45647 -9.25875 -9.12242 -8.82103 -8.03982 -6.22755 -4.30071 -0.39336 0.81160 1.30874 1.40738 2.10048 2.24435 2.49717 3.10174 3.20314 3.20674 3.28163 3.31037 3.58846 3.84802 4.29523 4.46358 4.52319 4.65131 5.02119 5.12936 5.15312 5.19231 5.26531 5.43656 5.48866 6.04353 7.17322 7.23585 7.23811 7.37020 7.41667 7.57925 7.88414 8.44426 8.66633 8.90576 9.36511 10.87400 Molecular weight = 294.05amu Principal moments of inertia in cm(-1) A = 0.033263 B = 0.002728 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.564644 B =10259.989328 C =11081.107542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C 0.267 3.733 3 C 0.041 3.959 4 C -0.118 4.118 5 C -0.243 4.243 6 S 0.346 5.654 7 C -0.224 4.224 8 C 0.532 3.468 9 O -0.487 6.487 10 O -0.322 6.322 11 C 0.051 3.949 12 C 0.501 3.499 13 O -0.533 6.533 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.545 4.545 17 H 0.065 0.935 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.157 0.843 25 H 0.183 0.817 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.394 0.606 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 -8.520 -21.447 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.064 5.064 2 C -0.051 4.051 3 C 0.021 3.979 4 C -0.149 4.149 5 C -0.381 4.381 6 S 0.617 5.383 7 C -0.348 4.348 8 C 0.375 3.625 9 O -0.376 6.376 10 O -0.237 6.237 11 C -0.027 4.027 12 C 0.283 3.717 13 O -0.411 6.411 14 N -0.355 5.355 15 C 0.131 3.869 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 H 0.175 0.825 25 H 0.200 0.800 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.226 0.774 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.585 -8.225 -20.717 22.439 hybrid contribution -1.800 0.112 0.295 1.827 sum -4.384 -8.112 -20.423 22.408 Atomic orbital electron populations 1.81205 1.11562 1.06743 1.06870 1.24653 0.91571 0.94725 0.94127 1.15266 0.86069 1.02870 0.93692 1.19740 0.92235 1.03469 0.99458 1.25491 1.00615 1.07362 1.04619 1.83910 0.98946 1.51747 1.03716 1.23952 1.00093 1.13981 0.96755 1.19565 0.84655 0.75295 0.83034 1.90953 1.15685 1.50692 1.80221 1.86611 1.38700 1.74304 1.24122 1.22970 0.96108 1.01438 0.82150 1.19811 0.89284 0.79544 0.83043 1.90709 1.19974 1.53900 1.76476 1.46370 1.12097 1.63053 1.13993 1.19195 0.85390 0.96193 0.86120 1.21240 0.93492 1.44828 0.98785 0.91706 1.24949 0.94767 0.95273 0.98986 1.69978 1.02947 1.46258 1.32987 0.86338 0.79304 0.78551 0.82596 1.19599 1.20748 1.20753 0.82522 0.79959 0.88113 0.88109 0.77351 0.95188 0.95175 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.57 18.54 41.84 0.78 -4.79 16 2 C 0.27 3.23 13.90 -22.48 -0.31 2.92 16 3 C 0.04 0.39 5.74 -107.77 -0.62 -0.23 16 4 C -0.12 -0.68 9.99 -41.08 -0.41 -1.09 16 5 C -0.24 -1.08 10.87 29.02 0.32 -0.77 16 6 S 0.35 2.47 22.91 -107.50 -2.46 0.01 16 7 C -0.22 -2.34 6.50 -36.24 -0.24 -2.57 16 8 C 0.53 7.21 7.92 34.08 0.27 7.48 16 9 O -0.49 -7.63 15.15 -19.35 -0.29 -7.93 16 10 O -0.32 -4.77 9.62 -47.72 -0.46 -5.22 16 11 C 0.05 0.73 5.96 36.01 0.21 0.95 16 12 C 0.50 9.54 7.91 -10.98 -0.09 9.45 16 13 O -0.53 -12.31 16.50 -14.10 -0.23 -12.54 16 14 N -0.70 -14.06 5.55 -61.47 -0.34 -14.40 16 15 C 0.25 6.39 5.43 -5.20 -0.03 6.36 16 16 C -0.55 -14.34 9.28 -34.44 -0.32 -14.66 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.88 -25.43 13.29 55.43 0.74 -24.69 16 20 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 25 H 0.18 0.24 8.06 -52.48 -0.42 -0.18 16 26 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.39 6.60 8.32 -40.82 -0.34 6.26 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.85 8.14 -51.92 -0.42 0.42 16 31 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -34.33 314.26 -6.28 -40.61 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -2.41 Total: -0.67 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.31 Total: 9.47 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 1.17 Total: -43.88 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.98 Total: -25.69 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.46 Total: 0.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.33 -6.28 -40.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052226926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.860 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds