Wall clock time and date at job start Tue Mar 31 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 S 1.80996 * 109.47276 * 179.72570 * 9 7 2 11 11 C 1.76195 * 99.99998 * 179.97438 * 10 9 7 12 12 N 1.31151 * 126.38202 * 359.68688 * 11 10 9 13 13 N 1.28649 * 109.31308 * 179.82460 * 12 11 10 14 14 C 1.30077 * 109.56134 * 0.45120 * 13 12 11 15 15 C 1.50696 * 126.20661 * 179.75031 * 14 13 12 16 16 C 1.50707 * 109.47324 * 89.97510 * 15 14 13 17 17 C 1.38222 * 120.00811 * 264.72558 * 16 15 14 18 18 C 1.38226 * 120.02042 * 179.72314 * 17 16 15 19 19 C 1.38261 * 120.04977 * 0.54648 * 18 17 16 20 20 C 1.38175 * 120.02989 * 359.73016 * 19 18 17 21 21 C 1.38431 * 120.01567 * 84.99870 * 16 15 14 22 22 F 1.35103 * 120.02263 * 359.97438 * 21 16 15 23 23 O 1.34641 * 126.38547 * 180.02562 * 11 10 9 24 24 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09004 * 109.47362 * 209.97288 * 15 14 13 28 28 H 1.09004 * 109.47440 * 329.97387 * 15 14 13 29 29 H 1.07997 * 119.98919 * 359.97438 * 17 16 15 30 30 H 1.08000 * 119.97432 * 180.30162 * 18 17 16 31 31 H 1.08006 * 119.98534 * 179.74547 * 19 18 17 32 32 H 1.08000 * 120.01401 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 16 4.1150 -2.9003 0.0099 11 6 5.8530 -2.6103 0.0083 12 7 6.4465 -1.4409 -0.0035 13 7 7.7217 -1.6109 0.0031 14 6 7.9914 -2.8834 0.0096 15 6 9.3655 -3.5021 0.0133 16 6 9.8234 -3.7006 1.4353 17 6 10.6173 -2.7477 2.0454 18 6 11.0326 -2.9268 3.3515 19 6 10.6639 -4.0644 4.0455 20 6 9.8750 -5.0210 3.4358 21 6 9.4536 -4.8400 2.1291 22 9 8.6818 -5.7744 1.5321 23 8 6.8192 -3.5480 0.0127 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6845 -0.8913 26 1 3.8746 -0.6756 0.8886 27 1 9.3316 -4.4656 -0.4953 28 1 10.0624 -2.8425 -0.5040 29 1 10.9098 -1.8610 1.5027 30 1 11.6489 -2.1794 3.8291 31 1 10.9924 -4.2052 5.0647 32 1 9.5875 -5.9097 3.9779 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067955638.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:49 Heat of formation + Delta-G solvation = -7.713197 kcal Electronic energy + Delta-G solvation = -19884.189813 eV Core-core repulsion = 16465.588370 eV Total energy + Delta-G solvation = -3418.601443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.058 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.00084 -45.24367 -40.07974 -37.34714 -35.33188 -35.23728 -32.12736 -31.59621 -31.39627 -28.55512 -25.39319 -24.84377 -23.99861 -23.76081 -22.43670 -19.89507 -18.96835 -18.78174 -18.48689 -17.73603 -17.36915 -16.83871 -16.76671 -16.48692 -15.88245 -15.61709 -15.21441 -14.92033 -14.53203 -14.45199 -14.38242 -13.68188 -13.61772 -13.27844 -13.18025 -12.96220 -12.77818 -12.60881 -12.46293 -12.27851 -12.12084 -11.86808 -11.44611 -11.39711 -10.93307 -10.05334 -9.73298 -8.94481 -8.45114 -6.57484 -0.45316 -0.20262 0.08571 0.19775 1.11704 1.11889 1.33548 1.36995 1.47850 1.70509 2.25193 2.57056 2.88609 3.11160 3.22197 3.44647 3.67043 3.75365 3.87174 4.04872 4.20118 4.29663 4.34286 4.50614 4.54087 4.56443 4.57874 4.88344 5.04168 5.12880 5.15355 5.30912 5.41657 5.87632 5.93781 6.45667 7.00797 7.07357 8.69132 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.025451 B = 0.003536 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.893401 B = 7917.393600 C = 8223.998663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.040 3.960 3 Si 0.938 3.062 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.538 4.538 8 H 0.056 0.944 9 C 0.021 3.979 10 S 0.073 5.927 11 C 0.135 3.865 12 N -0.322 5.322 13 N -0.293 5.293 14 C 0.166 3.834 15 C 0.025 3.975 16 C -0.145 4.145 17 C -0.077 4.077 18 C -0.130 4.130 19 C -0.082 4.082 20 C -0.165 4.165 21 C 0.082 3.918 22 F -0.149 7.149 23 O -0.212 6.212 24 H 0.277 0.723 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.122 0.878 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.427 -8.055 5.726 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.163 4.163 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.577 4.577 8 H 0.074 0.926 9 C -0.128 4.128 10 S 0.304 5.696 11 C -0.182 4.182 12 N -0.174 5.174 13 N -0.139 5.139 14 C -0.050 4.050 15 C -0.013 4.013 16 C -0.147 4.147 17 C -0.095 4.095 18 C -0.148 4.148 19 C -0.100 4.100 20 C -0.184 4.184 21 C 0.062 3.938 22 F -0.127 7.127 23 O -0.094 6.094 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.174 0.826 29 H 0.173 0.827 30 H 0.178 0.822 31 H 0.181 0.819 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 25.763 -7.715 5.685 27.487 hybrid contribution -0.100 0.279 -0.227 0.373 sum 25.663 -7.436 5.458 27.270 Atomic orbital electron populations 1.69946 1.07817 1.29082 1.49439 1.25588 0.95473 1.02392 0.92838 0.85840 0.79472 0.78827 0.79865 1.18571 1.19570 1.17791 1.20424 0.87771 0.94798 1.54714 0.92574 1.21624 0.99026 0.90361 1.01772 1.85919 0.79247 1.14907 1.89546 1.30537 1.00050 0.85167 1.02451 1.74916 0.99826 1.21538 1.21118 1.73985 1.06478 1.15830 1.17597 1.28625 0.89640 0.87397 0.99292 1.19270 0.82676 1.04056 0.95294 1.19695 1.03113 0.95667 0.96217 1.21353 0.94770 0.97609 0.95741 1.21653 1.00497 0.98583 0.94066 1.21505 0.94828 0.92399 1.01276 1.21463 1.01149 1.02827 0.92930 1.18013 0.94622 0.87949 0.93166 1.91490 1.73123 1.64175 1.83930 1.85015 1.15158 1.38455 1.70749 0.91355 0.92894 0.92894 0.85961 0.82631 0.82748 0.82191 0.81885 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 13.96 21.45 0.30 -54.78 16 2 C 0.04 2.24 5.47 84.65 0.46 2.71 16 3 Si 0.94 43.08 27.47 68.60 1.88 44.97 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.25 -11.42 6.53 99.48 0.65 -10.77 16 7 C -0.54 -30.05 9.68 25.60 0.25 -29.81 16 8 H 0.06 3.40 7.95 -2.91 -0.02 3.38 16 9 C 0.02 1.00 4.05 71.24 0.29 1.29 16 10 S 0.07 3.07 22.23 -56.49 -1.26 1.81 16 11 C 0.14 5.46 8.53 130.34 1.11 6.57 16 12 N -0.32 -13.58 11.63 -172.07 -2.00 -15.58 16 13 N -0.29 -10.62 12.20 -165.25 -2.02 -12.64 16 14 C 0.17 5.07 7.71 88.37 0.68 5.75 16 15 C 0.03 0.47 5.75 29.10 0.17 0.64 16 16 C -0.15 -2.79 5.12 -19.82 -0.10 -2.89 16 17 C -0.08 -1.15 9.68 22.26 0.22 -0.93 16 18 C -0.13 -1.55 10.04 22.27 0.22 -1.33 16 19 C -0.08 -0.99 10.04 22.26 0.22 -0.77 16 20 C -0.17 -2.73 10.03 22.31 0.22 -2.50 16 21 C 0.08 1.74 7.24 22.37 0.16 1.90 16 22 F -0.15 -3.74 16.57 44.97 0.75 -2.99 16 23 O -0.21 -7.62 10.90 -10.29 -0.11 -7.74 16 24 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.05 2.53 7.58 -2.39 -0.02 2.51 16 26 H 0.05 2.58 7.18 -2.40 -0.02 2.56 16 27 H 0.12 1.97 7.79 -2.38 -0.02 1.95 16 28 H 0.16 1.93 8.05 -2.38 -0.02 1.91 16 29 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 31 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -69.42 308.16 2.55 -66.86 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: 1.10 Total: -0.55 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 3.91 Total: -19.36 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.72 Total: -83.00 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.11 Total: -7.74 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.75 Total: -2.99 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.97 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.26 Total: 1.81 kcal Total: -69.42 2.55 -66.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067955638.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.149 kcal (2) G-P(sol) polarization free energy of solvation -69.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds