Wall clock time and date at job start Tue Mar 31 2020 03:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00107 * 2 1 4 4 H 1.48500 * 109.47097 * 270.00138 * 3 2 1 5 5 H 1.48505 * 109.47098 * 30.00354 * 3 2 1 6 6 H 1.48502 * 109.47031 * 150.00040 * 3 2 1 7 7 C 1.37878 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00266 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99807 * 94.77340 * 10 9 7 12 12 C 1.53005 * 109.46892 * 90.49941 * 11 10 9 13 13 C 1.52995 * 117.49854 * 243.74395 * 12 11 10 14 14 C 1.53002 * 117.49646 * 175.08493 * 12 11 10 15 15 C 1.34768 * 120.00105 * 274.77657 * 10 9 7 16 16 O 1.21518 * 120.00236 * 185.36540 * 15 10 9 17 17 C 1.48171 * 120.00082 * 5.35982 * 15 10 9 18 18 C 1.39259 * 119.71935 * 186.31905 * 17 15 10 19 19 C 1.38743 * 119.04276 * 179.71413 * 18 17 15 20 20 Cl 1.73605 * 120.77266 * 180.30443 * 19 18 17 21 21 C 1.38768 * 118.45982 * 0.55040 * 19 18 17 22 22 C 1.38495 * 119.33395 * 359.72818 * 21 19 18 23 23 N 1.31544 * 120.92213 * 359.97438 * 22 21 19 24 24 H 0.97004 * 119.99925 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47076 * 299.99583 * 9 7 2 26 26 H 1.09002 * 109.47355 * 59.99436 * 9 7 2 27 27 H 1.08998 * 109.47025 * 210.49688 * 11 10 9 28 28 H 1.09005 * 109.47388 * 330.50204 * 11 10 9 29 29 H 1.09001 * 115.54718 * 29.41929 * 12 11 10 30 30 H 1.08997 * 117.50381 * 0.02562 * 13 12 11 31 31 H 1.09008 * 117.49380 * 145.02326 * 13 12 11 32 32 H 1.09001 * 117.49526 * 214.97884 * 14 12 11 33 33 H 1.09000 * 117.50174 * 359.97438 * 14 12 11 34 34 H 1.08001 * 120.47532 * 359.97438 * 18 17 15 35 35 H 1.08001 * 120.33192 * 179.76008 * 21 19 18 36 36 H 1.08005 * 119.54168 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.3430 -3.2310 -1.2653 12 6 5.8209 -2.9905 -1.5798 13 6 6.1536 -2.1838 -2.8365 14 6 6.4056 -3.6934 -2.8066 15 6 4.1332 -3.2428 1.1622 16 8 4.6292 -4.3521 1.1727 17 6 3.6753 -2.6240 2.4282 18 6 3.9343 -3.2590 3.6402 19 6 3.5044 -2.6641 4.8176 20 17 3.8100 -3.4124 6.3540 21 6 2.8198 -1.4596 4.7384 22 6 2.5928 -0.8886 3.4972 23 7 3.0170 -1.4718 2.3970 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 -0.8912 26 1 3.8752 -0.6804 0.8888 27 1 4.1591 -4.3020 -1.1808 28 1 3.7294 -2.8191 -2.0666 29 1 6.4713 -2.8648 -0.7141 30 1 5.3197 -1.8240 -3.4391 31 1 7.0232 -1.5276 -2.7977 32 1 7.4408 -4.0297 -2.7482 33 1 5.7375 -4.3274 -3.3895 34 1 4.4659 -4.1988 3.6636 35 1 2.4681 -0.9721 5.6356 36 1 2.0607 0.0490 3.4316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072270989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:18 Heat of formation + Delta-G solvation = 44.000250 kcal Electronic energy + Delta-G solvation = -21452.357150 eV Core-core repulsion = 18157.414770 eV Total energy + Delta-G solvation = -3294.942380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33726 -38.69211 -37.00968 -36.62025 -34.90209 -32.34213 -31.88830 -31.19900 -28.37685 -26.71721 -23.90534 -23.22863 -22.43635 -22.10773 -20.72650 -19.27222 -16.97483 -16.92490 -16.74009 -15.96451 -15.59880 -14.91961 -14.84677 -14.53031 -14.03399 -13.99092 -13.60727 -13.21106 -13.08923 -12.46577 -12.16380 -12.11249 -11.99383 -11.77349 -11.41329 -11.31174 -11.05390 -10.90802 -10.66823 -10.34868 -10.12259 -9.69436 -9.64728 -9.47291 -9.28373 -8.99572 -8.62375 -8.48834 -7.79385 -6.06803 -3.98328 0.91870 1.31964 1.98343 3.18785 3.23900 3.32448 3.35559 3.59781 4.06265 4.20756 4.39399 4.60676 4.90858 4.98988 5.02009 5.13860 5.20768 5.23277 5.29145 5.49921 5.67263 5.77579 5.83629 5.91358 6.00886 6.05261 6.06799 6.14107 6.27789 6.45171 6.57602 6.68501 7.03078 7.37839 7.62787 8.05647 8.21317 8.50488 8.77204 8.96505 9.54366 11.06641 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.006863 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.271397 B = 4078.936895 C = 6026.699955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.076 3.924 3 Si 0.865 3.135 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.486 4.486 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.566 5.566 11 C 0.148 3.852 12 C -0.159 4.159 13 C -0.181 4.181 14 C -0.178 4.178 15 C 0.569 3.431 16 O -0.560 6.560 17 C 0.093 3.907 18 C -0.113 4.113 19 C -0.013 4.013 20 Cl -0.064 7.064 21 C -0.149 4.149 22 C 0.105 3.895 23 N -0.376 5.376 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.061 -2.198 5.107 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.525 4.525 8 H 0.088 0.912 9 C 0.088 3.912 10 N -0.293 5.293 11 C 0.025 3.975 12 C -0.178 4.178 13 C -0.218 4.218 14 C -0.215 4.215 15 C 0.356 3.644 16 O -0.440 6.440 17 C -0.045 4.045 18 C -0.135 4.135 19 C -0.048 4.048 20 Cl -0.035 7.035 21 C -0.170 4.170 22 C -0.053 4.053 23 N -0.086 5.086 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.031 -2.318 4.395 10.308 hybrid contribution 0.306 0.644 1.032 1.254 sum 9.337 -1.675 5.427 10.928 Atomic orbital electron populations 1.69902 1.06126 1.26636 1.51396 1.24689 0.94423 0.98333 0.95044 0.87035 0.80715 0.84384 0.78651 1.20465 1.21282 1.18723 1.21102 0.88684 0.94404 1.48343 0.91164 1.20256 0.96228 0.76993 0.97741 1.47837 1.61016 1.16069 1.04388 1.20985 0.91913 0.98391 0.86186 1.22758 0.98016 1.04548 0.92476 1.23060 1.03372 0.93768 1.01609 1.22899 1.01573 0.95204 1.01836 1.17757 0.78828 0.84603 0.83253 1.90705 1.46569 1.20031 1.86694 1.21251 0.97228 0.92913 0.93144 1.21948 0.99818 1.01265 0.90437 1.21050 1.01353 0.95335 0.87058 1.98366 1.94644 1.81927 1.28572 1.22320 0.99136 0.94759 1.00802 1.23083 0.96117 0.99806 0.86334 1.68777 1.03707 1.07004 1.29160 0.92809 0.96110 0.92126 0.90221 0.89696 0.88002 0.88506 0.89267 0.89168 0.88777 0.83232 0.83980 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 13.96 55.43 0.77 -24.99 16 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.86 19.71 27.47 -169.99 -4.67 15.05 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 7 C -0.49 -12.55 8.00 -34.44 -0.28 -12.82 16 8 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 9 C 0.21 4.63 3.81 -5.19 -0.02 4.61 16 10 N -0.57 -11.65 2.47 -176.05 -0.43 -12.09 16 11 C 0.15 2.64 5.62 -4.04 -0.02 2.61 16 12 C -0.16 -2.43 6.01 -90.62 -0.54 -2.98 16 13 C -0.18 -2.39 10.18 -26.70 -0.27 -2.66 16 14 C -0.18 -2.22 10.25 -26.69 -0.27 -2.49 16 15 C 0.57 11.91 7.61 -12.18 -0.09 11.82 16 16 O -0.56 -12.18 15.98 5.35 0.09 -12.10 16 17 C 0.09 1.83 6.55 -83.02 -0.54 1.29 16 18 C -0.11 -1.90 9.45 -39.02 -0.37 -2.27 16 19 C -0.01 -0.20 6.37 -39.20 -0.25 -0.45 16 20 Cl -0.06 -0.80 29.02 -51.86 -1.50 -2.31 16 21 C -0.15 -2.10 9.94 -39.29 -0.39 -2.49 16 22 C 0.11 1.78 11.18 -17.58 -0.20 1.58 16 23 N -0.38 -7.58 4.80 -9.82 -0.05 -7.63 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.02 0.46 7.46 -51.93 -0.39 0.07 16 26 H 0.06 1.37 4.78 -51.93 -0.25 1.12 16 27 H 0.08 1.43 7.52 -51.93 -0.39 1.04 16 28 H 0.08 1.48 7.80 -51.93 -0.41 1.08 16 29 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.10 1.27 8.03 -51.93 -0.42 0.85 16 31 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.15 2.39 7.66 -52.49 -0.40 1.99 16 35 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.17 2.56 8.06 -52.48 -0.42 2.14 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -29.32 323.20 -8.65 -37.97 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.38 Total: 3.55 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.35 Total: -2.33 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.29 Total: -44.71 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.67 Total: 15.05 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.32 -8.65 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072270989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.969 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds