Wall clock time and date at job start Tue Mar 31 2020 03:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00107 * 2 1 4 4 H 1.48500 * 109.47097 * 270.00138 * 3 2 1 5 5 H 1.48505 * 109.47098 * 30.00354 * 3 2 1 6 6 H 1.48502 * 109.47031 * 150.00040 * 3 2 1 7 7 C 1.37878 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00266 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47162 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99807 * 94.77340 * 10 9 7 12 12 C 1.53005 * 109.46892 * 90.49941 * 11 10 9 13 13 C 1.52995 * 117.49854 * 243.74395 * 12 11 10 14 14 C 1.53002 * 117.49646 * 175.08493 * 12 11 10 15 15 C 1.34768 * 120.00105 * 274.77657 * 10 9 7 16 16 O 1.21518 * 120.00236 * 185.36540 * 15 10 9 17 17 C 1.48171 * 120.00082 * 5.35982 * 15 10 9 18 18 C 1.39259 * 119.71935 * 186.31905 * 17 15 10 19 19 C 1.38743 * 119.04276 * 179.71413 * 18 17 15 20 20 Cl 1.73605 * 120.77266 * 180.30443 * 19 18 17 21 21 C 1.38768 * 118.45982 * 0.55040 * 19 18 17 22 22 C 1.38495 * 119.33395 * 359.72818 * 21 19 18 23 23 N 1.31544 * 120.92213 * 359.97438 * 22 21 19 24 24 H 0.97004 * 119.99925 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47076 * 299.99583 * 9 7 2 26 26 H 1.09002 * 109.47355 * 59.99436 * 9 7 2 27 27 H 1.08998 * 109.47025 * 210.49688 * 11 10 9 28 28 H 1.09005 * 109.47388 * 330.50204 * 11 10 9 29 29 H 1.09001 * 115.54718 * 29.41929 * 12 11 10 30 30 H 1.08997 * 117.50381 * 0.02562 * 13 12 11 31 31 H 1.09008 * 117.49380 * 145.02326 * 13 12 11 32 32 H 1.09001 * 117.49526 * 214.97884 * 14 12 11 33 33 H 1.09000 * 117.50174 * 359.97438 * 14 12 11 34 34 H 1.08001 * 120.47532 * 359.97438 * 18 17 15 35 35 H 1.08001 * 120.33192 * 179.76008 * 21 19 18 36 36 H 1.08005 * 119.54168 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.3430 -3.2310 -1.2653 12 6 5.8209 -2.9905 -1.5798 13 6 6.1536 -2.1838 -2.8365 14 6 6.4056 -3.6934 -2.8066 15 6 4.1332 -3.2428 1.1622 16 8 4.6292 -4.3521 1.1727 17 6 3.6753 -2.6240 2.4282 18 6 3.9343 -3.2590 3.6402 19 6 3.5044 -2.6641 4.8176 20 17 3.8100 -3.4124 6.3540 21 6 2.8198 -1.4596 4.7384 22 6 2.5928 -0.8886 3.4972 23 7 3.0170 -1.4718 2.3970 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 -0.8912 26 1 3.8752 -0.6804 0.8888 27 1 4.1591 -4.3020 -1.1808 28 1 3.7294 -2.8191 -2.0666 29 1 6.4713 -2.8648 -0.7141 30 1 5.3197 -1.8240 -3.4391 31 1 7.0232 -1.5276 -2.7977 32 1 7.4408 -4.0297 -2.7482 33 1 5.7375 -4.3274 -3.3895 34 1 4.4659 -4.1988 3.6636 35 1 2.4681 -0.9721 5.6356 36 1 2.0607 0.0490 3.4316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072270989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:17 Heat of formation + Delta-G solvation = 28.451177 kcal Electronic energy + Delta-G solvation = -21453.031409 eV Core-core repulsion = 18157.414770 eV Total energy + Delta-G solvation = -3295.616639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.088 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77579 -40.13698 -38.26587 -37.77562 -36.50273 -34.30948 -33.20513 -32.54421 -30.15029 -28.23257 -25.37591 -24.54038 -24.17138 -23.18870 -22.01058 -20.71674 -18.93190 -18.45522 -18.17740 -17.30466 -16.89855 -16.49811 -16.27147 -15.92344 -15.68140 -15.25969 -14.91110 -14.75160 -14.56680 -14.18003 -13.70835 -13.49044 -13.31658 -13.19085 -12.89079 -12.59527 -12.41662 -12.32133 -12.14323 -11.94263 -11.61596 -11.37492 -11.17555 -10.82865 -10.67635 -10.44790 -10.32551 -9.99831 -9.45549 -8.11259 -6.08007 -0.42499 0.04146 0.80700 1.44057 1.47321 1.57657 1.68276 2.12082 2.47573 2.78150 2.94822 3.17594 3.28118 3.61864 3.77116 3.85163 3.92705 4.00292 4.10339 4.23368 4.35578 4.52701 4.61843 4.69396 4.76466 4.81216 4.81688 4.83677 5.02948 5.14508 5.26219 5.28863 5.46533 5.64240 5.76140 6.28017 6.55164 6.81531 6.87372 7.18559 7.49872 9.06099 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.006863 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.271397 B = 4078.936895 C = 6026.699955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.029 3.971 3 Si 0.928 3.072 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.476 4.476 8 H 0.018 0.982 9 C 0.222 3.778 10 N -0.572 5.572 11 C 0.147 3.853 12 C -0.181 4.181 13 C -0.172 4.172 14 C -0.158 4.158 15 C 0.561 3.439 16 O -0.577 6.577 17 C 0.066 3.934 18 C -0.110 4.110 19 C -0.011 4.011 20 Cl -0.036 7.036 21 C -0.123 4.123 22 C 0.092 3.908 23 N -0.414 5.414 24 H 0.262 0.738 25 H 0.029 0.971 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.153 0.847 35 H 0.183 0.817 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.747 -1.211 6.257 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.168 4.168 3 Si 0.753 3.247 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.166 1.166 7 C -0.515 4.515 8 H 0.037 0.963 9 C 0.100 3.900 10 N -0.299 5.299 11 C 0.024 3.976 12 C -0.200 4.200 13 C -0.209 4.209 14 C -0.195 4.195 15 C 0.349 3.651 16 O -0.459 6.459 17 C -0.072 4.072 18 C -0.132 4.132 19 C -0.045 4.045 20 Cl -0.007 7.007 21 C -0.144 4.144 22 C -0.068 4.068 23 N -0.125 5.125 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.171 0.829 35 H 0.200 0.800 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.745 -1.353 5.534 12.161 hybrid contribution -0.254 0.205 0.814 0.877 sum 10.491 -1.148 6.348 12.315 Atomic orbital electron populations 1.70057 1.08102 1.27547 1.53668 1.25375 0.94940 1.01819 0.94630 0.86017 0.80120 0.79699 0.78902 1.20121 1.21005 1.16641 1.21046 0.90350 0.92326 1.47765 0.96338 1.19999 0.93692 0.78176 0.98089 1.47892 1.60983 1.15683 1.05391 1.21071 0.93892 0.97552 0.85070 1.22539 0.95971 1.08153 0.93352 1.23142 1.03795 0.94577 0.99405 1.23020 1.02454 0.95010 0.99052 1.18118 0.78494 0.84527 0.83975 1.90667 1.47491 1.20612 1.87120 1.21111 0.99036 0.93720 0.93337 1.21982 0.99575 1.01242 0.90414 1.21131 1.00434 0.95376 0.87590 1.98382 1.94422 1.81516 1.26344 1.22629 0.96784 0.93827 1.01119 1.23362 0.96293 1.00355 0.86744 1.68548 1.04824 1.07745 1.31351 0.92867 0.95342 0.91633 0.91171 0.89993 0.89245 0.88490 0.87765 0.87380 0.87925 0.82891 0.79975 0.80699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.95 13.96 21.45 0.30 -55.65 16 2 C 0.03 1.56 5.47 84.66 0.46 2.02 16 3 Si 0.93 40.36 27.47 68.60 1.88 42.25 16 4 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 7 C -0.48 -25.34 8.00 25.60 0.20 -25.14 16 8 H 0.02 1.15 8.06 -2.91 -0.02 1.13 16 9 C 0.22 9.96 3.81 85.63 0.33 10.28 16 10 N -0.57 -24.25 2.47 -829.19 -2.05 -26.30 16 11 C 0.15 5.35 5.62 86.38 0.49 5.83 16 12 C -0.18 -5.47 6.01 -10.79 -0.06 -5.54 16 13 C -0.17 -4.24 10.18 30.62 0.31 -3.93 16 14 C -0.16 -3.66 10.25 30.62 0.31 -3.35 16 15 C 0.56 24.21 7.61 86.88 0.66 24.88 16 16 O -0.58 -25.84 15.98 -3.77 -0.06 -25.90 16 17 C 0.07 2.61 6.55 41.89 0.27 2.89 16 18 C -0.11 -3.64 9.45 22.64 0.21 -3.42 16 19 C -0.01 -0.29 6.37 22.52 0.14 -0.14 16 20 Cl -0.04 -0.79 29.02 -2.72 -0.08 -0.87 16 21 C -0.12 -3.13 9.94 22.46 0.22 -2.90 16 22 C 0.09 2.98 11.18 84.80 0.95 3.93 16 23 N -0.41 -16.72 4.80 -184.97 -0.89 -17.61 16 24 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 25 H 0.03 1.23 7.46 -2.39 -0.02 1.22 16 26 H 0.07 2.94 4.78 -2.39 -0.01 2.93 16 27 H 0.07 2.63 7.52 -2.39 -0.02 2.61 16 28 H 0.08 2.95 7.80 -2.38 -0.02 2.93 16 29 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.10 2.39 8.03 -2.39 -0.02 2.37 16 31 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.15 4.84 7.66 -2.91 -0.02 4.81 16 35 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.18 5.18 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -65.48 323.20 4.65 -60.82 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.04 Total: 17.86 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 4.50 Total: 5.41 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -2.63 Total: -99.56 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.88 Total: 42.25 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -65.48 4.65 -60.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072270989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.273 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds