Wall clock time and date at job start Tue Mar 31 2020 03:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00250 * 2 1 4 4 H 1.07995 * 119.99984 * 201.51648 * 3 2 1 5 5 C 1.38807 * 120.00087 * 21.51633 * 3 2 1 6 6 N 1.31625 * 120.00058 * 15.07750 * 5 3 2 7 7 Si 1.86801 * 119.99999 * 195.07933 * 5 3 2 8 8 H 1.48501 * 109.47428 * 94.35936 * 7 5 3 9 9 H 1.48502 * 109.47075 * 214.35430 * 7 5 3 10 10 H 1.48495 * 109.47307 * 334.35434 * 7 5 3 11 11 C 1.46501 * 119.99680 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.43385 * 178.91542 * 11 2 1 13 13 C 1.54629 * 110.59732 * 56.29526 * 11 2 1 14 14 C 1.54661 * 101.68435 * 216.24994 * 13 11 2 15 15 N 1.46756 * 105.38167 * 25.77322 * 14 13 11 16 16 C 1.39972 * 124.35066 * 162.85404 * 15 14 13 17 17 C 1.38869 * 120.05932 * 174.57773 * 16 15 14 18 18 C 1.38109 * 119.94388 * 180.02562 * 17 16 15 19 19 C 1.38386 * 120.05673 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 119.94032 * 179.97438 * 19 18 17 21 21 C 1.38383 * 120.11168 * 0.25515 * 19 18 17 22 22 C 1.38112 * 120.06252 * 359.49180 * 21 19 18 23 23 C 1.34419 * 111.30017 * 342.58475 * 15 14 13 24 24 O 1.21287 * 124.94225 * 180.65704 * 23 15 14 25 25 H 1.09001 * 109.47302 * 275.17970 * 1 2 3 26 26 H 1.09008 * 109.46766 * 35.17384 * 1 2 3 27 27 H 1.08998 * 109.47281 * 155.16979 * 1 2 3 28 28 H 0.96996 * 119.99678 * 179.97438 * 6 5 3 29 29 H 1.08994 * 110.97547 * 334.58894 * 13 11 2 30 30 H 1.09001 * 110.96547 * 98.31058 * 13 11 2 31 31 H 1.08998 * 110.39874 * 266.73791 * 14 13 11 32 32 H 1.09009 * 110.17686 * 144.68478 * 14 13 11 33 33 H 1.08002 * 120.02614 * 359.97438 * 17 16 15 34 34 H 1.07996 * 119.97310 * 179.97438 * 18 17 16 35 35 H 1.08007 * 119.96723 * 179.73882 * 21 19 18 36 36 H 1.07993 * 120.03185 * 180.25453 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1733 1.2184 -0.3430 5 6 1.5283 2.3461 0.4409 6 7 0.4078 2.2724 1.1276 7 14 2.2822 4.0122 0.0596 8 1 1.6705 4.5609 -1.1773 9 1 2.0292 4.9405 1.1907 10 1 3.7460 3.8597 -0.1378 11 6 2.1975 -1.2688 0.0006 12 1 3.2721 -1.0878 -0.0188 13 6 1.7738 -2.1420 -1.2032 14 6 1.8209 -3.5620 -0.5920 15 7 1.6080 -3.3733 0.8477 16 6 1.2361 -4.3932 1.7314 17 6 1.1679 -4.1411 3.0953 18 6 0.8012 -5.1493 3.9651 19 6 0.5015 -6.4096 3.4786 20 17 0.0416 -7.6747 4.5747 21 6 0.5733 -6.6646 2.1203 22 6 0.9344 -5.6586 1.2457 23 6 1.8217 -2.0966 1.2097 24 8 1.7267 -1.6702 2.3412 25 1 -0.3634 0.0928 1.0235 26 1 -0.3633 0.8401 -0.5920 27 1 -0.3634 -0.9326 -0.4315 28 1 -0.0261 3.0832 1.4360 29 1 0.7667 -1.8885 -1.5338 30 1 2.4863 -2.0485 -2.0228 31 1 2.7927 -4.0213 -0.7728 32 1 1.0270 -4.1790 -1.0131 33 1 1.4021 -3.1578 3.4756 34 1 0.7484 -4.9539 5.0260 35 1 0.3430 -7.6503 1.7435 36 1 0.9864 -5.8571 0.1854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072292467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:30 Heat of formation + Delta-G solvation = 24.970364 kcal Electronic energy + Delta-G solvation = -21247.607501 eV Core-core repulsion = 17951.839923 eV Total energy + Delta-G solvation = -3295.767578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.088 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76767 -38.65866 -36.48401 -36.16054 -35.25409 -32.43644 -31.07719 -30.51556 -28.37527 -26.88745 -26.00875 -23.40467 -23.06344 -22.11549 -20.50256 -19.11789 -17.50167 -17.21022 -16.62532 -16.02825 -15.57663 -14.95580 -14.52180 -14.23281 -13.76877 -13.54970 -13.49043 -13.43119 -13.24338 -12.97453 -12.36072 -12.16363 -11.87357 -11.78125 -11.56481 -11.52552 -10.93195 -10.89406 -10.80799 -10.63418 -10.53662 -10.04220 -9.98805 -9.80692 -9.19995 -9.06953 -8.60589 -7.72237 -6.91585 -5.81867 -3.29523 1.15652 1.29781 2.15944 2.96064 3.09271 3.34846 3.40803 3.43090 3.78055 4.40060 4.62433 4.75412 4.84134 5.00476 5.06181 5.23832 5.32249 5.39194 5.39781 5.48816 5.59095 5.69196 5.87083 5.95802 6.04289 6.19689 6.28331 6.31695 6.44258 6.54770 6.63051 7.11784 7.22723 7.32977 7.64849 7.72122 8.23089 8.59988 9.08669 9.69729 10.16764 11.22164 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.003587 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.518232 B = 7804.502096 C = 8342.027700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.566 5.566 3 C -0.268 4.268 4 H 0.075 0.925 5 C 0.009 3.991 6 N -0.895 5.895 7 Si 0.910 3.090 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.151 3.849 12 H 0.105 0.895 13 C -0.149 4.149 14 C 0.101 3.899 15 N -0.570 5.570 16 C 0.189 3.811 17 C -0.152 4.152 18 C -0.078 4.078 19 C -0.074 4.074 20 Cl -0.085 7.085 21 C -0.081 4.081 22 C -0.160 4.160 23 C 0.490 3.510 24 O -0.488 6.488 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.001 0.999 28 H 0.255 0.745 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.165 0.835 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -17.557 -2.323 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.286 5.286 3 C -0.397 4.397 4 H 0.093 0.907 5 C -0.191 4.191 6 N -0.538 5.538 7 Si 0.740 3.260 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.202 1.202 11 C 0.038 3.962 12 H 0.122 0.878 13 C -0.189 4.189 14 C -0.022 4.022 15 N -0.295 5.295 16 C 0.092 3.908 17 C -0.172 4.172 18 C -0.097 4.097 19 C -0.101 4.101 20 Cl -0.056 7.056 21 C -0.101 4.101 22 C -0.181 4.181 23 C 0.278 3.722 24 O -0.360 6.360 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.019 0.981 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.182 0.818 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.852 -17.146 -1.553 17.237 hybrid contribution 0.149 0.602 0.077 0.624 sum 1.001 -16.545 -1.476 16.640 Atomic orbital electron populations 1.20890 0.81957 0.95744 1.00133 1.43936 1.01973 0.99166 1.83519 1.19259 0.98273 0.84303 1.37866 0.90739 1.25105 0.97873 0.98797 0.97328 1.70119 1.19367 1.27317 1.36969 0.86158 0.78759 0.83617 0.77472 1.21335 1.21652 1.20249 1.21184 0.98669 0.86935 0.89448 0.87761 1.23220 1.04261 0.92125 0.99311 1.22247 1.01679 0.99481 0.78749 1.46384 1.65355 1.08646 1.09110 1.18079 0.94825 0.88069 0.89779 1.21732 1.02333 1.01975 0.91178 1.20949 0.97710 0.90594 1.00454 1.20787 1.08256 0.90235 0.90854 1.98339 1.91270 1.52056 1.63928 1.20729 0.99082 0.99399 0.90868 1.20701 1.05755 0.91634 1.00034 1.23371 0.75477 0.80907 0.92483 1.90552 1.48730 1.73949 1.22731 0.94618 0.93215 0.98059 0.93476 0.89374 0.89249 0.90616 0.90493 0.81799 0.84871 0.85006 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.81 8.22 59.85 0.49 4.31 16 2 N -0.57 -13.74 2.90 -173.50 -0.50 -14.25 16 3 C -0.27 -7.15 9.61 -15.06 -0.14 -7.29 16 4 H 0.07 1.90 7.84 -52.49 -0.41 1.49 16 5 C 0.01 0.25 5.06 -17.43 -0.09 0.16 16 6 N -0.90 -26.11 10.74 55.49 0.60 -25.52 16 7 Si 0.91 21.41 29.58 -169.99 -5.03 16.38 16 8 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 C 0.15 2.94 3.41 -67.94 -0.23 2.70 16 12 H 0.10 1.95 7.91 -51.93 -0.41 1.54 16 13 C -0.15 -2.09 6.69 -25.00 -0.17 -2.26 16 14 C 0.10 1.19 6.51 -3.03 -0.02 1.18 16 15 N -0.57 -9.10 3.14 -112.15 -0.35 -9.45 16 16 C 0.19 2.88 6.60 -83.68 -0.55 2.33 16 17 C -0.15 -2.46 9.29 -39.40 -0.37 -2.83 16 18 C -0.08 -1.07 9.82 -39.57 -0.39 -1.46 16 19 C -0.07 -0.93 6.32 -39.47 -0.25 -1.18 16 20 Cl -0.08 -0.95 28.95 -51.86 -1.50 -2.46 16 21 C -0.08 -0.93 9.82 -39.57 -0.39 -1.32 16 22 C -0.16 -1.93 9.42 -39.40 -0.37 -2.31 16 23 C 0.49 9.91 7.03 -10.86 -0.08 9.83 16 24 O -0.49 -11.86 14.80 5.55 0.08 -11.78 16 25 H 0.04 0.99 7.37 -51.93 -0.38 0.61 16 26 H 0.05 1.27 7.30 -51.92 -0.38 0.89 16 27 H 0.00 0.02 6.31 -51.93 -0.33 -0.31 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.09 1.32 6.22 -51.93 -0.32 0.99 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.74 7.25 -51.92 -0.38 0.37 16 33 H 0.16 3.11 5.24 -52.49 -0.28 2.84 16 34 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.13 1.25 6.75 -52.49 -0.35 0.90 16 LS Contribution 312.13 15.07 4.70 4.70 Total: -1.00 -31.58 312.13 -8.62 -40.20 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.07 Total: 0.29 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.55 Total: 1.87 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.26 Total: -49.21 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.58 -8.62 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072292467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.170 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds