Wall clock time and date at job start Tue Mar 31 2020 03:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.71011 * 125.59383 * 2 1 4 4 C 1.75917 * 90.76615 * 180.19311 * 3 2 1 5 5 N 1.37468 * 125.03445 * 179.77834 * 4 3 2 6 6 C 1.34780 * 120.00296 * 0.02562 * 5 4 3 7 7 O 1.22105 * 120.00037 * 0.02562 * 6 5 4 8 8 C 1.39140 * 119.99799 * 179.97438 * 6 5 4 9 9 H 1.08007 * 120.00297 * 0.02562 * 8 6 5 10 10 C 1.39692 * 119.99824 * 179.97438 * 8 6 5 11 11 N 1.30896 * 119.99940 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00042 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47069 * 90.00116 * 12 10 8 14 14 H 1.48495 * 109.47187 * 210.00326 * 12 10 8 15 15 H 1.48505 * 109.46816 * 329.99889 * 12 10 8 16 16 N 1.30050 * 109.92341 * 359.80040 * 4 3 2 17 17 C 1.32264 * 116.11796 * 359.97438 * 16 4 3 18 18 C 1.46338 * 122.80896 * 180.02562 * 17 16 4 19 19 C 1.38025 * 125.48549 * 325.02520 * 18 17 16 20 20 C 1.36882 * 113.16391 * 180.02562 * 19 18 17 21 21 C 1.34628 * 115.13729 * 359.97438 * 20 19 18 22 22 S 1.70586 * 111.05152 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47142 * 270.15698 * 1 2 3 24 24 H 1.08997 * 109.47764 * 30.16169 * 1 2 3 25 25 H 1.09009 * 109.46872 * 150.16352 * 1 2 3 26 26 H 0.97008 * 119.99633 * 180.02562 * 5 4 3 27 27 H 0.96997 * 120.00142 * 179.97438 * 11 10 8 28 28 H 1.08007 * 123.41546 * 359.73258 * 19 18 17 29 29 H 1.08005 * 122.43298 * 180.02562 * 20 19 18 30 30 H 1.07996 * 124.47067 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5023 1.3906 0.0000 4 6 3.9464 0.3859 -0.0059 5 7 5.2370 0.8592 -0.0129 6 6 5.4679 2.1871 -0.0151 7 8 4.5307 2.9698 -0.0105 8 6 6.7742 2.6660 -0.0216 9 1 7.6033 1.9737 -0.0253 10 6 7.0136 4.0423 -0.0245 11 7 6.0089 4.8813 -0.0205 12 14 8.7674 4.6853 -0.0340 13 1 9.2251 4.8540 -1.4365 14 1 8.8182 5.9949 0.6643 15 1 9.6529 3.7181 0.6629 16 7 3.6119 -0.8708 -0.0032 17 6 2.3145 -1.1280 0.0037 18 6 1.7759 -2.4887 0.0081 19 6 2.3341 -3.5734 -0.6377 20 6 1.6199 -4.7284 -0.4657 21 6 0.5137 -4.6093 0.2924 22 16 0.3135 -3.0050 0.8365 23 1 -0.3633 0.0028 1.0277 24 1 -0.3634 0.8885 -0.5163 25 1 -0.3633 -0.8915 -0.5113 26 1 5.9816 0.2374 -0.0162 27 1 6.1750 5.8369 -0.0221 28 1 3.2397 -3.5156 -1.2234 29 1 1.9223 -5.6674 -0.9054 30 1 -0.1586 -5.4219 0.5246 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072333516.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:51 Heat of formation + Delta-G solvation = 30.569681 kcal Electronic energy + Delta-G solvation = -17905.450868 eV Core-core repulsion = 14918.889577 eV Total energy + Delta-G solvation = -2986.561291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 294.024 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.19825 -38.09310 -37.02761 -33.95855 -32.71179 -31.54995 -29.44868 -27.54273 -25.69617 -23.88964 -23.11662 -20.97198 -19.81691 -19.10886 -17.74330 -16.63495 -16.55929 -15.81943 -15.52728 -15.26776 -14.58158 -14.22660 -13.37312 -13.34900 -12.92802 -12.87431 -12.55709 -12.51326 -12.31487 -12.10026 -11.78693 -11.58857 -11.24419 -10.91951 -10.77270 -10.57506 -10.36851 -9.79267 -9.15212 -9.03625 -8.75397 -8.39543 -8.17726 -8.06790 -6.89116 -6.64820 -5.22921 0.79032 1.54235 1.80116 1.99088 2.18772 2.77610 2.81355 2.93897 3.01684 3.05510 3.60082 3.77788 4.17200 4.18854 5.09731 5.15881 5.40962 5.43112 5.48354 5.59263 5.70524 5.79679 6.05023 6.11758 6.28485 6.39315 6.63588 6.69296 6.98960 7.48512 7.55405 7.71679 8.39438 8.52198 8.94825 10.01175 10.22632 Molecular weight = 294.02amu Principal moments of inertia in cm(-1) A = 0.037969 B = 0.003713 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.272650 B = 7540.241336 C = 8168.685183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.353 4.353 3 S 0.274 5.726 4 C 0.294 3.706 5 N -0.636 5.636 6 C 0.529 3.471 7 O -0.553 6.553 8 C -0.517 4.517 9 H 0.077 0.923 10 C 0.085 3.915 11 N -0.732 5.732 12 Si 0.921 3.079 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.260 1.260 16 N -0.528 5.528 17 C 0.138 3.862 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.283 4.283 22 S 0.195 5.805 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.406 0.594 27 H 0.278 0.722 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.880 -10.764 0.297 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.479 4.479 3 S 0.528 5.472 4 C -0.075 4.075 5 N -0.284 5.284 6 C 0.341 3.659 7 O -0.439 6.439 8 C -0.552 4.552 9 H 0.095 0.905 10 C -0.140 4.140 11 N -0.358 5.358 12 Si 0.744 3.256 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.184 1.184 16 N -0.253 5.253 17 C 0.001 3.999 18 C -0.231 4.231 19 C -0.154 4.154 20 C -0.163 4.163 21 C -0.420 4.420 22 S 0.462 5.538 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.242 0.758 27 H 0.089 0.911 28 H 0.161 0.839 29 H 0.152 0.848 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.306 -8.505 1.209 12.665 hybrid contribution 2.135 -1.966 -0.935 3.050 sum -7.170 -10.472 0.275 12.694 Atomic orbital electron populations 1.20034 0.88070 1.02318 1.01753 1.26745 1.02267 1.00497 1.18435 1.85120 0.92546 1.02162 1.67379 1.24219 0.93606 0.90543 0.99110 1.43553 1.01903 1.10385 1.72546 1.16646 0.91934 0.77599 0.79720 1.90665 1.44244 1.52116 1.56835 1.19385 0.91969 0.92985 1.50832 0.90462 1.25765 0.99349 0.96555 0.92346 1.70113 1.32279 1.03618 1.29833 0.86127 0.81334 0.78778 0.79335 1.19229 1.19969 1.18433 1.66687 1.16187 1.15996 1.26402 1.17616 0.86880 0.90124 1.05270 1.22800 1.00010 0.95170 1.05110 1.20834 1.01541 0.90804 1.02230 1.19942 0.95568 0.99394 1.01378 1.25275 1.04881 1.02551 1.09291 1.82910 1.22763 0.99680 1.48404 0.91661 0.91550 0.91445 0.75751 0.91103 0.83928 0.84832 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 9.16 36.00 0.33 -0.56 16 2 C -0.35 -6.47 6.50 -34.13 -0.22 -6.69 16 3 S 0.27 5.77 20.16 -107.50 -2.17 3.61 16 4 C 0.29 6.56 8.30 -88.49 -0.73 5.83 16 5 N -0.64 -14.42 5.33 -15.37 -0.08 -14.50 16 6 C 0.53 13.83 7.43 -15.92 -0.12 13.71 16 7 O -0.55 -15.83 12.23 4.82 0.06 -15.77 16 8 C -0.52 -13.11 9.16 -38.70 -0.35 -13.47 16 9 H 0.08 1.77 7.84 -52.48 -0.41 1.36 16 10 C 0.09 2.12 5.49 -17.41 -0.10 2.02 16 11 N -0.73 -19.53 11.67 55.53 0.65 -18.88 16 12 Si 0.92 18.02 29.56 -169.99 -5.02 13.00 16 13 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 14 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 15 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 16 N -0.53 -11.22 10.62 -10.41 -0.11 -11.33 16 17 C 0.14 2.68 6.62 -84.24 -0.56 2.12 16 18 C -0.11 -1.84 6.01 -36.40 -0.22 -2.06 16 19 C -0.12 -1.87 10.28 -40.15 -0.41 -2.28 16 20 C -0.13 -1.65 10.15 -41.35 -0.42 -2.07 16 21 C -0.28 -3.30 10.95 29.45 0.32 -2.98 16 22 S 0.20 2.51 20.68 -107.50 -2.22 0.29 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.88 6.60 -51.92 -0.34 0.54 16 26 H 0.41 8.12 8.76 -40.82 -0.36 7.76 16 27 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 28 H 0.14 2.17 8.06 -52.48 -0.42 1.75 16 29 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -29.96 293.56 -9.32 -39.28 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -2.36 Total: 6.32 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.48 Total: -6.43 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.46 Total: -44.71 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.06 Total: -15.77 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.02 Total: 13.00 kcal Atomic # 16 Polarization: 8.29 SS G_CDS: -4.39 Total: 3.90 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.96 -9.32 -39.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072333516.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.849 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds