Wall clock time and date at job start Tue Mar 31 2020 03:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38203 * 119.97003 * 264.72510 * 10 9 7 12 12 C 1.38159 * 120.10621 * 179.72461 * 11 10 9 13 13 C 1.38797 * 120.05212 * 0.55104 * 12 11 10 14 14 O 1.35897 * 120.02459 * 179.70602 * 13 12 11 15 15 C 1.42906 * 117.00011 * 0.02562 * 14 13 12 16 16 F 1.39902 * 109.47071 * 300.00124 * 15 14 13 17 17 F 1.39902 * 109.46667 * 60.00559 * 15 14 13 18 18 C 1.38615 * 119.94415 * 359.72333 * 13 12 11 19 19 C 1.38648 * 119.89355 * 359.97438 * 18 13 12 20 20 O 1.35901 * 120.02528 * 179.97438 * 19 18 13 21 21 C 1.42891 * 117.00035 * 0.02916 * 20 19 18 22 22 F 1.39905 * 109.47433 * 299.99497 * 21 20 19 23 23 F 1.39899 * 109.47439 * 59.99828 * 21 20 19 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.07995 * 119.94650 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.97172 * 180.24745 * 12 11 10 29 29 H 1.08996 * 109.46849 * 180.02562 * 15 14 13 30 30 H 1.08001 * 120.05135 * 180.02562 * 18 13 12 31 31 H 1.09000 * 109.47332 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5952 -4.2409 -1.1916 12 6 3.4970 -5.2876 -1.1954 13 6 4.0301 -5.7501 -0.0003 14 8 4.9126 -6.7836 -0.0042 15 6 5.2474 -7.3460 -1.2745 16 9 4.0895 -7.8381 -1.8864 17 9 5.8200 -6.3597 -2.0847 18 6 3.6612 -5.1574 1.1972 19 6 2.7607 -4.1031 1.1978 20 8 2.3968 -3.5203 2.3704 21 6 2.9816 -4.0443 3.5642 22 9 2.6431 -5.3955 3.6952 23 9 4.3731 -3.9166 3.4969 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.1778 -3.8856 -2.1221 28 1 3.7838 -5.7493 -2.1287 29 1 5.9585 -8.1603 -1.1352 30 1 4.0752 -5.5157 2.1281 31 1 2.6075 -3.4907 4.4254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078406412.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:45 Heat of formation + Delta-G solvation = -269.424294 kcal Electronic energy + Delta-G solvation = -23988.616173 eV Core-core repulsion = 19541.763723 eV Total energy + Delta-G solvation = -4446.852450 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.067 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -49.35647 -49.11609 -47.35118 -47.10343 -39.98730 -38.51449 -36.37549 -33.27515 -31.03892 -30.00772 -27.37393 -25.91772 -25.59678 -23.19446 -22.29813 -20.92704 -19.42208 -18.53451 -17.91935 -17.66224 -17.53460 -17.39024 -16.30460 -15.98280 -15.26415 -14.65872 -14.62273 -14.44655 -14.19187 -14.06396 -13.86874 -13.68709 -13.50863 -13.33518 -13.31764 -13.16492 -12.48243 -12.39808 -12.22094 -12.13215 -11.44408 -11.31571 -10.89207 -10.80702 -10.56899 -10.41030 -9.62272 -9.41373 -8.40049 -8.33050 -7.55983 -6.01756 -4.04776 1.69372 1.79170 2.59232 2.98465 3.31712 3.37876 3.42562 3.42887 3.71366 4.08499 4.25256 4.47243 4.56147 4.61332 4.89580 5.10539 5.28847 5.33740 5.45722 5.49621 5.88293 6.05182 6.51351 6.58866 6.74262 6.94810 7.15522 7.52212 7.59759 7.75441 7.93464 8.32739 8.98862 9.58122 11.08079 Molecular weight = 294.07amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.005642 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.507164 B = 4961.798310 C = 6122.320797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.057 3.943 10 C -0.067 4.067 11 C -0.060 4.060 12 C -0.210 4.210 13 C 0.106 3.894 14 O -0.323 6.323 15 C 0.413 3.587 16 F -0.200 7.200 17 F -0.199 7.199 18 C -0.207 4.207 19 C 0.132 3.868 20 O -0.289 6.289 21 C 0.405 3.595 22 F -0.205 7.205 23 F -0.202 7.202 24 H 0.261 0.739 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.177 0.823 30 H 0.136 0.864 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.534 -13.892 2.627 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.067 4.067 11 C -0.078 4.078 12 C -0.229 4.229 13 C 0.063 3.937 14 O -0.241 6.241 15 C 0.322 3.678 16 F -0.182 7.182 17 F -0.181 7.181 18 C -0.227 4.227 19 C 0.088 3.912 20 O -0.206 6.206 21 C 0.314 3.686 22 F -0.187 7.187 23 F -0.184 7.184 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.193 0.807 30 H 0.154 0.846 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.351 -13.717 2.787 16.299 hybrid contribution 0.696 0.713 -0.221 1.021 sum 9.047 -13.003 2.567 16.048 Atomic orbital electron populations 1.69953 1.05975 1.26730 1.50701 1.24967 0.94849 0.99102 0.95270 0.86562 0.79866 0.83271 0.78165 1.20627 1.21178 1.19847 1.21011 0.92926 0.89775 1.50715 0.92625 1.18234 0.92186 0.88863 0.98716 1.20166 0.99687 0.98188 0.88699 1.20765 0.95538 0.93648 0.97884 1.21397 1.03136 1.02095 0.96240 1.18227 0.92177 0.88987 0.94271 1.86536 1.60295 1.47665 1.29622 1.23260 0.82630 0.86353 0.75535 1.93092 1.53426 1.87737 1.83962 1.93101 1.84595 1.65737 1.74677 1.20513 1.04190 1.00363 0.97589 1.18332 0.95149 0.92218 0.85495 1.86852 1.64728 1.56603 1.12399 1.23435 0.75393 0.78402 0.91345 1.93068 1.91851 1.37714 1.96082 1.93075 1.33071 1.95527 1.96756 0.92892 0.94589 0.95115 0.84608 0.85373 0.80669 0.84617 0.80545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.16 9.09 -34.44 -0.31 -14.48 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.06 1.46 4.82 -29.03 -0.14 1.32 16 10 C -0.07 -1.48 5.08 -104.45 -0.53 -2.01 16 11 C -0.06 -1.18 9.67 -39.62 -0.38 -1.57 16 12 C -0.21 -3.73 8.26 -39.40 -0.33 -4.06 16 13 C 0.11 1.88 6.48 -39.24 -0.25 1.62 16 14 O -0.32 -4.75 10.43 -19.42 -0.20 -4.95 16 15 C 0.41 4.48 5.98 101.05 0.60 5.09 16 16 F -0.20 -2.48 15.58 2.25 0.04 -2.44 16 17 F -0.20 -2.54 15.58 2.25 0.04 -2.51 16 18 C -0.21 -3.87 8.19 -39.29 -0.32 -4.19 16 19 C 0.13 2.72 6.45 -39.24 -0.25 2.47 16 20 O -0.29 -5.67 9.56 -19.43 -0.19 -5.85 16 21 C 0.41 5.82 5.98 101.05 0.60 6.43 16 22 F -0.21 -3.01 15.58 2.25 0.04 -2.97 16 23 F -0.20 -3.13 15.58 2.25 0.04 -3.10 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.04 0.98 7.69 -51.93 -0.40 0.58 16 26 H 0.03 0.81 8.05 -51.93 -0.42 0.40 16 27 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 28 H 0.13 2.04 5.09 -52.49 -0.27 1.78 16 29 H 0.18 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.14 2.36 5.10 -52.49 -0.27 2.09 16 31 H 0.18 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 288.23 15.07 4.34 4.34 Total: -1.00 -32.61 288.23 -3.76 -36.37 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -2.16 Total: -2.13 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.41 Total: -7.80 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.39 Total: -10.80 kcal Atomic # 9 Polarization: -11.16 SS G_CDS: 0.14 Total: -11.02 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.61 -3.76 -36.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078406412.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.057 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds