Wall clock time and date at job start Tue Mar 31 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38203 * 119.97003 * 264.72510 * 10 9 7 12 12 C 1.38159 * 120.10621 * 179.72461 * 11 10 9 13 13 C 1.38797 * 120.05212 * 0.55104 * 12 11 10 14 14 O 1.35897 * 120.02459 * 179.70602 * 13 12 11 15 15 C 1.42906 * 117.00011 * 0.02562 * 14 13 12 16 16 F 1.39902 * 109.47071 * 300.00124 * 15 14 13 17 17 F 1.39902 * 109.46667 * 60.00559 * 15 14 13 18 18 C 1.38615 * 119.94415 * 359.72333 * 13 12 11 19 19 C 1.38648 * 119.89355 * 359.97438 * 18 13 12 20 20 O 1.35901 * 120.02528 * 179.97438 * 19 18 13 21 21 C 1.42891 * 117.00035 * 0.02916 * 20 19 18 22 22 F 1.39905 * 109.47433 * 299.99497 * 21 20 19 23 23 F 1.39899 * 109.47439 * 59.99828 * 21 20 19 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.07995 * 119.94650 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.97172 * 180.24745 * 12 11 10 29 29 H 1.08996 * 109.46849 * 180.02562 * 15 14 13 30 30 H 1.08001 * 120.05135 * 180.02562 * 18 13 12 31 31 H 1.09000 * 109.47332 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5952 -4.2409 -1.1916 12 6 3.4970 -5.2876 -1.1954 13 6 4.0301 -5.7501 -0.0003 14 8 4.9126 -6.7836 -0.0042 15 6 5.2474 -7.3460 -1.2745 16 9 4.0895 -7.8381 -1.8864 17 9 5.8200 -6.3597 -2.0847 18 6 3.6612 -5.1574 1.1972 19 6 2.7607 -4.1031 1.1978 20 8 2.3968 -3.5203 2.3704 21 6 2.9816 -4.0443 3.5642 22 9 2.6431 -5.3955 3.6952 23 9 4.3731 -3.9166 3.4969 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.1778 -3.8856 -2.1221 28 1 3.7838 -5.7493 -2.1287 29 1 5.9585 -8.1603 -1.1352 30 1 4.0752 -5.5157 2.1281 31 1 2.6075 -3.4907 4.4254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078406412.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:43 Heat of formation + Delta-G solvation = -290.257048 kcal Electronic energy + Delta-G solvation = -23989.519549 eV Core-core repulsion = 19541.763723 eV Total energy + Delta-G solvation = -4447.755826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.067 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -50.29578 -50.28353 -48.28722 -48.28077 -41.40661 -39.81695 -37.81141 -35.29285 -32.80250 -31.49231 -29.02701 -27.06418 -26.94790 -24.99050 -23.70321 -22.50336 -20.65474 -19.65558 -18.90707 -18.84770 -18.71050 -18.56953 -18.41314 -17.32808 -16.82565 -16.24857 -15.92931 -15.77607 -15.57440 -15.31464 -14.98355 -14.77491 -14.70658 -14.63727 -14.57377 -14.36293 -14.28869 -13.92020 -13.56891 -13.34875 -13.22352 -12.99028 -12.59927 -12.44084 -12.33755 -12.02937 -11.52847 -11.45618 -10.56868 -9.81723 -9.13820 -8.15944 -6.28134 0.19976 0.27762 1.41196 1.41624 1.52474 1.53249 1.77157 2.40155 2.52511 2.58292 2.62188 3.14557 3.50199 3.55599 3.70647 3.72390 3.73439 3.89665 3.97730 4.15982 4.32534 4.54217 4.94124 5.03946 5.24890 5.29662 5.42982 5.66900 5.76987 5.87368 6.09425 6.22951 6.81910 7.39002 8.93047 Molecular weight = 294.07amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.005642 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.507164 B = 4961.798310 C = 6122.320797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.048 0.952 9 C 0.070 3.930 10 C -0.105 4.105 11 C -0.061 4.061 12 C -0.209 4.209 13 C 0.118 3.882 14 O -0.325 6.325 15 C 0.405 3.595 16 F -0.209 7.209 17 F -0.210 7.210 18 C -0.214 4.214 19 C 0.127 3.873 20 O -0.318 6.318 21 C 0.402 3.598 22 F -0.206 7.206 23 F -0.208 7.208 24 H 0.265 0.735 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.242 0.758 30 H 0.149 0.851 31 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.460 -14.746 2.854 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.106 4.106 11 C -0.079 4.079 12 C -0.228 4.228 13 C 0.075 3.925 14 O -0.243 6.243 15 C 0.316 3.684 16 F -0.191 7.191 17 F -0.192 7.192 18 C -0.233 4.233 19 C 0.083 3.917 20 O -0.235 6.235 21 C 0.312 3.688 22 F -0.188 7.188 23 F -0.190 7.190 24 H 0.074 0.926 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.160 0.840 28 H 0.166 0.834 29 H 0.258 0.742 30 H 0.166 0.834 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 10.290 -14.592 3.012 18.108 hybrid contribution 0.149 0.834 -0.289 0.895 sum 10.439 -13.758 2.723 17.484 Atomic orbital electron populations 1.70069 1.07487 1.27815 1.51457 1.25818 0.95701 1.02708 0.94723 0.85515 0.78591 0.78837 0.78522 1.19765 1.20343 1.19365 1.21269 0.92714 0.91183 1.50662 0.93333 1.17889 0.92376 0.90118 0.96263 1.19933 1.01182 0.98805 0.90698 1.20863 0.95741 0.93958 0.97342 1.21539 1.02485 1.01444 0.97285 1.18343 0.91483 0.88938 0.93745 1.86563 1.59048 1.46332 1.32353 1.24385 0.83107 0.86999 0.73867 1.93077 1.54329 1.87654 1.84017 1.93082 1.84619 1.66576 1.74922 1.20628 1.03977 1.00020 0.98677 1.18420 0.95165 0.92548 0.85551 1.86815 1.65701 1.57633 1.13391 1.24251 0.74972 0.78744 0.90790 1.93058 1.91806 1.38058 1.95907 1.93056 1.33717 1.95550 1.96689 0.92605 0.97310 0.97212 0.84046 0.83401 0.74219 0.83395 0.75450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.52 -29.94 9.09 25.60 0.23 -29.71 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.07 3.81 4.82 29.10 0.14 3.95 16 10 C -0.11 -4.82 5.08 -19.75 -0.10 -4.92 16 11 C -0.06 -2.42 9.67 22.24 0.22 -2.21 16 12 C -0.21 -7.20 8.26 22.38 0.18 -7.01 16 13 C 0.12 4.01 6.48 22.49 0.15 4.15 16 14 O -0.33 -8.60 10.43 -92.39 -0.96 -9.56 16 15 C 0.41 7.34 5.98 113.37 0.68 8.01 16 16 F -0.21 -4.56 15.58 44.97 0.70 -3.86 16 17 F -0.21 -4.75 15.58 44.97 0.70 -4.05 16 18 C -0.21 -7.81 8.19 22.46 0.18 -7.63 16 19 C 0.13 5.31 6.45 22.49 0.15 5.46 16 20 O -0.32 -12.61 9.56 -92.44 -0.88 -13.49 16 21 C 0.40 11.07 5.98 113.37 0.68 11.75 16 22 F -0.21 -5.79 15.58 44.97 0.70 -5.09 16 23 F -0.21 -6.17 15.58 44.97 0.70 -5.47 16 24 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 25 H 0.01 0.50 7.69 -2.39 -0.02 0.48 16 26 H 0.01 0.54 8.05 -2.39 -0.02 0.52 16 27 H 0.14 5.27 8.06 -2.91 -0.02 5.25 16 28 H 0.15 4.44 5.09 -2.91 -0.01 4.42 16 29 H 0.24 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.15 4.94 5.10 -2.91 -0.01 4.93 16 31 H 0.23 3.76 8.14 -2.39 -0.02 3.74 16 Total: -1.00 -72.29 288.23 7.43 -64.87 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.20 Total: 2.75 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 2.96 Total: -17.20 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.28 Total: -55.41 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.85 Total: -23.05 kcal Atomic # 9 Polarization: -21.27 SS G_CDS: 2.80 Total: -18.47 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -72.29 7.43 -64.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078406412.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.392 kcal (2) G-P(sol) polarization free energy of solvation -72.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -297.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -290.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds