Wall clock time and date at job start Tue Mar 31 2020 03:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47217 * 2 1 4 4 N 1.46496 * 109.47244 * 239.99669 * 2 1 3 5 5 C 1.34778 * 120.00099 * 85.00282 * 4 2 1 6 6 O 1.21545 * 119.99539 * 359.97438 * 5 4 2 7 7 C 1.47862 * 119.99682 * 179.97438 * 5 4 2 8 8 C 1.39669 * 120.10351 * 359.72576 * 7 5 4 9 9 C 1.38047 * 120.03790 * 179.74090 * 8 7 5 10 10 C 1.38175 * 120.24017 * 0.55493 * 9 8 7 11 11 C 1.39184 * 120.20389 * 359.70109 * 10 9 8 12 12 S 1.76199 * 120.01869 * 180.02562 * 11 10 9 13 13 C 1.76208 * 99.99736 * 265.52347 * 12 11 10 14 14 H 1.07998 * 119.99821 * 5.11946 * 13 12 11 15 15 C 1.38726 * 119.99690 * 185.12128 * 13 12 11 16 16 N 1.31617 * 120.00567 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99803 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47630 * 89.99624 * 17 15 13 19 19 H 1.48504 * 109.47307 * 210.00116 * 17 15 13 20 20 H 1.48510 * 109.47096 * 329.99930 * 17 15 13 21 21 C 1.38871 * 119.96079 * 0.02562 * 11 10 9 22 22 C 1.50701 * 109.46826 * 119.99370 * 2 1 3 23 23 N 1.34770 * 120.00279 * 300.00365 * 22 2 1 24 24 O 1.21286 * 119.99564 * 119.99681 * 22 2 1 25 25 H 1.08997 * 109.47562 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47317 * 300.00731 * 1 2 3 27 27 H 1.09002 * 109.46853 * 60.00378 * 1 2 3 28 28 H 0.96998 * 119.99737 * 265.00161 * 4 2 1 29 29 H 1.08003 * 119.97997 * 359.97438 * 8 7 5 30 30 H 1.08001 * 119.87679 * 180.27613 * 9 8 7 31 31 H 1.08003 * 119.90006 * 179.71684 * 10 9 8 32 32 H 0.97000 * 120.00290 * 180.02562 * 16 15 13 33 33 H 1.07993 * 120.12426 * 180.02562 * 21 11 10 34 34 H 0.97000 * 120.00398 * 179.97438 * 23 22 2 35 35 H 0.97002 * 120.00022 * 359.72181 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8577 1.1608 -2.4118 7 6 2.6406 -0.7154 -3.5641 8 6 2.9793 -2.0690 -3.5022 9 6 3.4347 -2.7198 -4.6312 10 6 3.5686 -2.0340 -5.8233 11 6 3.2391 -0.6837 -5.8951 12 16 3.4110 0.1858 -7.4180 13 6 5.0207 0.8689 -7.2002 14 1 5.6052 0.6071 -6.3306 15 6 5.5370 1.7428 -8.1457 16 7 4.8248 2.0615 -9.2057 17 14 7.2437 2.4664 -7.9152 18 1 8.2485 1.5772 -8.5515 19 1 7.3013 3.8096 -8.5460 20 1 7.5382 2.5877 -6.4647 21 6 2.7747 -0.0221 -4.7659 22 6 2.0323 -0.7103 1.2306 23 7 1.7066 -0.2498 2.4546 24 8 2.7295 -1.6965 1.1193 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 2.2490 -1.6318 -1.1524 29 1 2.8812 -2.6078 -2.5713 30 1 3.6917 -3.7676 -4.5814 31 1 3.9298 -2.5475 -6.7021 32 1 5.1860 2.6724 -9.8670 33 1 2.5179 1.0255 -4.8188 34 1 2.0296 -0.7072 3.2467 35 1 1.1523 0.5412 2.5435 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079388103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:00 Heat of formation + Delta-G solvation = -56.998803 kcal Electronic energy + Delta-G solvation = -20189.707980 eV Core-core repulsion = 16892.429658 eV Total energy + Delta-G solvation = -3297.278322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.60849 -39.41940 -37.79005 -35.14280 -34.22399 -32.49354 -31.66643 -30.54971 -29.75973 -25.55503 -25.27049 -23.45351 -22.24537 -20.82980 -20.36075 -18.79096 -17.96193 -17.37487 -16.68778 -16.17885 -15.56800 -15.42406 -15.10164 -14.83520 -14.67036 -14.29191 -14.02975 -13.72727 -13.39315 -13.06392 -12.85858 -12.69687 -12.28332 -11.95283 -11.61082 -11.14082 -11.11562 -11.06689 -10.68929 -10.37493 -10.17881 -9.98987 -9.81929 -9.31843 -9.15001 -8.99036 -8.57445 -8.00907 -6.69711 -6.27123 -4.00975 1.17034 1.69548 2.14755 2.70163 3.01223 3.21348 3.24179 3.28739 3.30046 3.48881 4.10314 4.27612 4.32914 4.66712 4.78759 4.87075 5.09249 5.15382 5.18523 5.29354 5.42921 5.49211 5.75757 5.79773 5.89564 6.00525 6.17664 6.28224 6.30473 6.60499 6.67384 6.81114 6.94993 7.21199 7.45033 7.59303 7.75065 8.22317 8.34491 9.18834 10.79615 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.021793 B = 0.003444 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.528297 B = 8128.601005 C = 8510.268100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 H 0.117 0.883 4 N -0.717 5.717 5 C 0.570 3.430 6 O -0.535 6.535 7 C -0.155 4.155 8 C -0.087 4.087 9 C -0.141 4.141 10 C -0.053 4.053 11 C -0.108 4.108 12 S -0.035 6.035 13 C -0.519 4.519 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.871 5.871 17 Si 0.921 3.079 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.017 4.017 22 C 0.517 3.483 23 N -0.849 5.849 24 O -0.537 6.537 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.409 0.591 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.270 0.730 33 H 0.140 0.860 34 H 0.405 0.595 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 -6.550 20.240 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 H 0.135 0.865 4 N -0.372 5.372 5 C 0.359 3.641 6 O -0.412 6.412 7 C -0.160 4.160 8 C -0.106 4.106 9 C -0.161 4.161 10 C -0.075 4.075 11 C -0.219 4.219 12 S 0.200 5.800 13 C -0.667 4.667 14 H 0.094 0.906 15 C -0.136 4.136 16 N -0.506 5.506 17 Si 0.746 3.254 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.196 1.196 21 C -0.039 4.039 22 C 0.301 3.699 23 N -0.414 5.414 24 O -0.413 6.413 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.247 0.753 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.079 0.921 33 H 0.157 0.843 34 H 0.236 0.764 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.601 -6.077 18.819 21.565 hybrid contribution 1.866 0.087 1.732 2.548 sum -6.735 -5.990 20.552 22.441 Atomic orbital electron populations 1.22161 0.92657 1.03227 1.03841 1.20717 0.95809 0.98373 0.83580 0.86504 1.45669 1.68515 1.14850 1.08209 1.18409 0.76662 0.86296 0.82766 1.90763 1.49982 1.15491 1.84940 1.19771 1.07675 0.94692 0.93871 1.21200 0.97816 0.93257 0.98320 1.21070 1.02082 0.99940 0.92987 1.21974 0.94096 0.93908 0.97476 1.22840 1.00650 0.96925 1.01473 1.83594 1.24573 1.60754 1.11113 1.22847 0.99871 1.32339 1.11634 0.90607 1.24995 0.98751 0.95225 0.94584 1.69983 1.37121 1.33509 1.09983 0.86125 0.82189 0.78346 0.78692 1.20162 1.20654 1.19559 1.21939 0.91960 1.00126 0.89859 1.20685 0.79447 0.84317 0.85486 1.43756 1.56077 1.33755 1.07788 1.90763 1.37505 1.26322 1.86700 0.91691 0.91128 0.90199 0.75292 0.86300 0.85782 0.85039 0.92067 0.84263 0.76407 0.76690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.38 37.16 0.35 -0.87 16 2 C 0.12 1.22 2.98 -69.08 -0.21 1.01 16 3 H 0.12 1.19 7.58 -51.93 -0.39 0.79 16 4 N -0.72 -8.98 4.90 -55.88 -0.27 -9.25 16 5 C 0.57 9.24 7.74 -12.32 -0.10 9.14 16 6 O -0.53 -10.13 16.01 5.33 0.09 -10.05 16 7 C -0.16 -2.68 5.87 -105.00 -0.62 -3.30 16 8 C -0.09 -1.27 9.54 -39.12 -0.37 -1.64 16 9 C -0.14 -2.11 10.02 -39.67 -0.40 -2.51 16 10 C -0.05 -0.98 9.79 -39.25 -0.38 -1.36 16 11 C -0.11 -2.34 5.45 -39.00 -0.21 -2.55 16 12 S -0.03 -0.90 21.41 -107.50 -2.30 -3.21 16 13 C -0.52 -14.78 9.46 30.91 0.29 -14.49 16 14 H 0.08 2.14 7.79 -52.49 -0.41 1.74 16 15 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 16 N -0.87 -25.58 13.22 55.49 0.73 -24.84 16 17 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 C -0.02 -0.35 9.34 -38.92 -0.36 -0.72 16 22 C 0.52 4.81 7.49 -10.99 -0.08 4.72 16 23 N -0.85 -4.13 8.76 31.22 0.27 -3.85 16 24 O -0.54 -7.09 16.67 5.55 0.09 -6.99 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.32 7.57 -51.93 -0.39 -0.08 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.41 4.77 5.82 -40.82 -0.24 4.53 16 29 H 0.12 1.35 6.40 -52.48 -0.34 1.02 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.14 3.06 7.65 -52.49 -0.40 2.66 16 34 H 0.40 1.56 8.93 -40.82 -0.36 1.20 16 35 H 0.40 0.82 8.26 -40.82 -0.34 0.48 16 LS Contribution 325.11 15.07 4.90 4.90 Total: -1.00 -35.13 325.11 -7.40 -42.53 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.70 Total: 4.75 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.19 Total: -10.58 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.73 Total: -37.95 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.18 Total: -17.04 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.13 -7.40 -42.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079388103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.473 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds