Wall clock time and date at job start Tue Mar 31 2020 03:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47217 * 2 1 4 4 N 1.46496 * 109.47244 * 239.99669 * 2 1 3 5 5 C 1.34778 * 120.00099 * 85.00282 * 4 2 1 6 6 O 1.21545 * 119.99539 * 359.97438 * 5 4 2 7 7 C 1.47862 * 119.99682 * 179.97438 * 5 4 2 8 8 C 1.39669 * 120.10351 * 359.72576 * 7 5 4 9 9 C 1.38047 * 120.03790 * 179.74090 * 8 7 5 10 10 C 1.38175 * 120.24017 * 0.55493 * 9 8 7 11 11 C 1.39184 * 120.20389 * 359.70109 * 10 9 8 12 12 S 1.76199 * 120.01869 * 180.02562 * 11 10 9 13 13 C 1.76208 * 99.99736 * 265.52347 * 12 11 10 14 14 H 1.07998 * 119.99821 * 5.11946 * 13 12 11 15 15 C 1.38726 * 119.99690 * 185.12128 * 13 12 11 16 16 N 1.31617 * 120.00567 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99803 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47630 * 89.99624 * 17 15 13 19 19 H 1.48504 * 109.47307 * 210.00116 * 17 15 13 20 20 H 1.48510 * 109.47096 * 329.99930 * 17 15 13 21 21 C 1.38871 * 119.96079 * 0.02562 * 11 10 9 22 22 C 1.50701 * 109.46826 * 119.99370 * 2 1 3 23 23 N 1.34770 * 120.00279 * 300.00365 * 22 2 1 24 24 O 1.21286 * 119.99564 * 119.99681 * 22 2 1 25 25 H 1.08997 * 109.47562 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47317 * 300.00731 * 1 2 3 27 27 H 1.09002 * 109.46853 * 60.00378 * 1 2 3 28 28 H 0.96998 * 119.99737 * 265.00161 * 4 2 1 29 29 H 1.08003 * 119.97997 * 359.97438 * 8 7 5 30 30 H 1.08001 * 119.87679 * 180.27613 * 9 8 7 31 31 H 1.08003 * 119.90006 * 179.71684 * 10 9 8 32 32 H 0.97000 * 120.00290 * 180.02562 * 16 15 13 33 33 H 1.07993 * 120.12426 * 180.02562 * 21 11 10 34 34 H 0.97000 * 120.00398 * 179.97438 * 23 22 2 35 35 H 0.97002 * 120.00022 * 359.72181 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8577 1.1608 -2.4118 7 6 2.6406 -0.7154 -3.5641 8 6 2.9793 -2.0690 -3.5022 9 6 3.4347 -2.7198 -4.6312 10 6 3.5686 -2.0340 -5.8233 11 6 3.2391 -0.6837 -5.8951 12 16 3.4110 0.1858 -7.4180 13 6 5.0207 0.8689 -7.2002 14 1 5.6052 0.6071 -6.3306 15 6 5.5370 1.7428 -8.1457 16 7 4.8248 2.0615 -9.2057 17 14 7.2437 2.4664 -7.9152 18 1 8.2485 1.5772 -8.5515 19 1 7.3013 3.8096 -8.5460 20 1 7.5382 2.5877 -6.4647 21 6 2.7747 -0.0221 -4.7659 22 6 2.0323 -0.7103 1.2306 23 7 1.7066 -0.2498 2.4546 24 8 2.7295 -1.6965 1.1193 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 2.2490 -1.6318 -1.1524 29 1 2.8812 -2.6078 -2.5713 30 1 3.6917 -3.7676 -4.5814 31 1 3.9298 -2.5475 -6.7021 32 1 5.1860 2.6724 -9.8670 33 1 2.5179 1.0255 -4.8188 34 1 2.0296 -0.7072 3.2467 35 1 1.1523 0.5412 2.5435 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079388103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:00 Heat of formation + Delta-G solvation = -84.389799 kcal Electronic energy + Delta-G solvation = -20190.895743 eV Core-core repulsion = 16892.429658 eV Total energy + Delta-G solvation = -3298.466084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.63641 -40.46517 -39.12122 -36.17068 -34.90808 -34.65533 -32.83489 -31.95405 -30.82740 -27.74409 -26.12419 -24.65149 -23.64293 -21.85173 -21.37965 -20.13517 -19.38538 -18.53060 -17.72431 -17.13846 -16.93431 -16.78067 -16.52344 -16.35690 -15.80688 -15.61076 -15.28723 -14.86903 -14.65747 -14.59223 -13.95461 -13.68542 -13.39620 -13.23276 -13.10862 -12.96684 -12.69737 -12.64669 -12.39992 -11.75777 -11.28864 -11.20586 -11.14361 -10.76299 -10.75055 -10.39784 -9.94444 -9.71596 -8.80432 -8.39358 -6.19325 -0.21380 0.24123 1.29472 1.37311 1.42991 1.45768 1.63166 1.69444 1.86433 2.23856 2.52915 2.78206 2.93665 3.41440 3.57341 3.80111 3.92765 3.97514 4.00574 4.08407 4.34840 4.45701 4.59817 4.64191 4.77346 4.91275 5.16021 5.19953 5.22442 5.31553 5.38481 5.48571 5.80110 5.84106 6.15824 6.30020 6.34431 7.01129 7.02342 7.19345 8.67793 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.021793 B = 0.003444 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.528297 B = 8128.601005 C = 8510.268100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.117 3.883 3 H 0.113 0.887 4 N -0.701 5.701 5 C 0.570 3.430 6 O -0.571 6.571 7 C -0.158 4.158 8 C -0.065 4.065 9 C -0.121 4.121 10 C -0.060 4.060 11 C -0.129 4.129 12 S -0.091 6.091 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.021 3.979 16 N -0.906 5.906 17 Si 0.992 3.008 18 H -0.262 1.262 19 H -0.271 1.271 20 H -0.270 1.270 21 C -0.040 4.040 22 C 0.521 3.479 23 N -0.824 5.824 24 O -0.578 6.578 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.416 0.584 29 H 0.164 0.836 30 H 0.174 0.826 31 H 0.137 0.863 32 H 0.274 0.726 33 H 0.108 0.892 34 H 0.414 0.586 35 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 -8.302 23.322 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.009 3.991 3 H 0.131 0.869 4 N -0.356 5.356 5 C 0.358 3.642 6 O -0.451 6.451 7 C -0.163 4.163 8 C -0.084 4.084 9 C -0.141 4.141 10 C -0.081 4.081 11 C -0.240 4.240 12 S 0.144 5.856 13 C -0.685 4.685 14 H 0.085 0.915 15 C -0.185 4.185 16 N -0.542 5.542 17 Si 0.813 3.187 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.194 1.194 21 C -0.062 4.062 22 C 0.305 3.695 23 N -0.389 5.389 24 O -0.458 6.458 25 H 0.089 0.911 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.255 0.745 29 H 0.181 0.819 30 H 0.191 0.809 31 H 0.155 0.845 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.247 0.753 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.218 -7.834 21.965 24.726 hybrid contribution 1.628 0.545 0.962 1.968 sum -6.590 -7.289 22.927 24.945 Atomic orbital electron populations 1.22140 0.90707 1.03864 1.04584 1.20963 0.97309 0.97935 0.82862 0.86921 1.45549 1.67097 1.15012 1.07919 1.18266 0.76598 0.85834 0.83476 1.90747 1.51782 1.17030 1.85543 1.19903 1.07395 0.95962 0.93038 1.21685 0.94839 0.91829 1.00046 1.21528 0.99635 1.01834 0.91069 1.22085 0.94131 0.92457 0.99455 1.22511 1.04070 0.98152 0.99306 1.83464 1.24345 1.62172 1.15629 1.23071 1.00919 1.32964 1.11517 0.91548 1.25987 1.03031 0.95390 0.94048 1.70100 1.39098 1.34159 1.10833 0.85056 0.77030 0.77938 0.78645 1.18713 1.19590 1.19422 1.21638 0.94038 0.99173 0.91385 1.20488 0.79067 0.83717 0.86233 1.43550 1.54920 1.33754 1.06660 1.90750 1.39598 1.28170 1.87284 0.91058 0.87527 0.92373 0.74493 0.81888 0.80895 0.84521 0.91655 0.87399 0.75277 0.74752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.38 71.98 0.68 -1.32 16 2 C 0.12 2.07 2.98 44.25 0.13 2.21 16 3 H 0.11 2.14 7.58 -2.39 -0.02 2.12 16 4 N -0.70 -16.29 4.90 -448.97 -2.20 -18.49 16 5 C 0.57 18.27 7.74 86.79 0.67 18.94 16 6 O -0.57 -22.26 16.01 -3.86 -0.06 -22.32 16 7 C -0.16 -5.38 5.87 -20.11 -0.12 -5.49 16 8 C -0.07 -1.69 9.54 22.57 0.22 -1.48 16 9 C -0.12 -3.19 10.02 22.21 0.22 -2.96 16 10 C -0.06 -2.16 9.79 22.48 0.22 -1.94 16 11 C -0.13 -5.80 5.45 22.65 0.12 -5.67 16 12 S -0.09 -5.00 21.41 -56.49 -1.21 -6.21 16 13 C -0.54 -31.89 9.46 67.94 0.64 -31.25 16 14 H 0.07 3.91 7.79 -2.91 -0.02 3.89 16 15 C 0.02 1.20 5.49 84.84 0.47 1.67 16 16 N -0.91 -54.90 13.22 21.63 0.29 -54.61 16 17 Si 0.99 45.05 29.55 68.60 2.03 47.08 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C -0.04 -1.74 9.34 22.70 0.21 -1.53 16 22 C 0.52 8.31 7.49 87.66 0.66 8.97 16 23 N -0.82 -5.30 8.76 -173.53 -1.52 -6.82 16 24 O -0.58 -13.87 16.67 -3.05 -0.05 -13.92 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.11 0.58 7.57 -2.39 -0.02 0.56 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.42 8.45 5.82 -92.71 -0.54 7.91 16 29 H 0.16 2.84 6.40 -2.91 -0.02 2.82 16 30 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 33 H 0.11 5.20 7.65 -2.91 -0.02 5.18 16 34 H 0.41 1.82 8.93 -92.71 -0.83 0.99 16 35 H 0.42 0.14 8.26 -92.71 -0.77 -0.63 16 Total: -1.00 -81.68 325.11 0.42 -81.26 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -0.97 Total: 13.91 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 4.12 Total: -19.86 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -3.44 Total: -79.93 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.11 Total: -36.24 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -1.21 Total: -6.21 kcal Total: -81.68 0.42 -81.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079388103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.129 kcal (2) G-P(sol) polarization free energy of solvation -81.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds