Wall clock time and date at job start Tue Mar 31 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 119.99750 * 2 1 4 4 H 1.48497 * 109.47389 * 274.66358 * 3 2 1 5 5 H 1.48504 * 109.47380 * 34.66540 * 3 2 1 6 6 H 1.48503 * 109.47148 * 154.66130 * 3 2 1 7 7 C 1.39942 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99906 * 162.22833 * 7 2 1 9 9 C 1.41399 * 119.99857 * 342.23392 * 7 2 1 10 10 C 1.40719 * 120.24181 * 155.28388 * 9 7 2 11 11 C 1.37614 * 119.74235 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25051 * 0.27218 * 11 10 9 13 13 S 1.76198 * 119.75340 * 179.70113 * 12 11 10 14 14 O 1.42096 * 106.40782 * 203.54588 * 13 12 11 15 15 O 1.42106 * 106.39862 * 336.46390 * 13 12 11 16 16 N 1.65599 * 107.21973 * 90.00292 * 13 12 11 17 17 C 1.38577 * 120.00040 * 64.99897 * 16 13 12 18 18 N 1.31218 * 126.46968 * 14.69196 * 17 16 13 19 19 N 1.28528 * 109.85593 * 179.81966 * 18 17 16 20 20 C 1.30292 * 110.05604 * 0.45446 * 19 18 17 21 21 N 1.36447 * 126.47383 * 195.00068 * 17 16 13 22 22 H 0.97002 * 127.14156 * 0.02562 * 21 17 16 23 23 C 1.38640 * 120.49863 * 359.45167 * 12 11 10 24 24 C 1.37618 * 120.24708 * 0.54572 * 23 12 11 25 25 H 0.97000 * 119.99938 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.12765 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.87950 * 179.97438 * 11 10 9 28 28 H 0.97007 * 119.99782 * 245.00376 * 16 13 12 29 29 H 1.07998 * 126.34762 * 179.76400 * 20 19 18 30 30 H 1.08001 * 119.87250 * 180.25455 * 23 12 11 31 31 H 1.07999 * 120.12371 * 179.70399 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1034 -1.3954 5 1 1.4924 2.6222 0.7963 6 1 3.5856 1.4138 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2343 -0.2849 9 6 1.3516 -2.4071 0.3747 10 6 1.8218 -3.6493 -0.0900 11 6 1.1748 -4.8061 0.2802 12 6 0.0604 -4.7503 1.1030 13 16 -0.7626 -6.2390 1.5624 14 8 -2.0945 -5.8743 1.8974 15 8 -0.4476 -7.1970 0.5613 16 7 -0.0590 -6.7764 2.9619 17 6 -0.1663 -6.0280 4.1232 18 7 -0.9983 -5.0363 4.3379 19 7 -0.8276 -4.5722 5.5242 20 6 0.1221 -5.2286 6.1284 21 7 0.5771 -6.1793 5.2573 22 1 1.2824 -6.8268 5.4132 23 6 -0.4082 -3.5325 1.5714 24 6 0.2231 -2.3630 1.2141 25 1 -0.4850 0.8400 0.0004 26 1 2.6866 -3.6946 -0.7352 27 1 1.5336 -5.7606 -0.0755 28 1 0.4284 -7.6151 2.9686 29 1 0.4826 -5.0544 7.1314 30 1 -1.2748 -3.5011 2.2152 31 1 -0.1465 -1.4150 1.5762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081300257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:35 Heat of formation + Delta-G solvation = 25.664899 kcal Electronic energy + Delta-G solvation = -21041.173079 eV Core-core repulsion = 17643.938981 eV Total energy + Delta-G solvation = -3397.234098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.057 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.83903 -37.54270 -36.62980 -35.48380 -35.22277 -34.02725 -33.42202 -30.24096 -29.43324 -29.22224 -25.81521 -23.05565 -22.25555 -21.48314 -21.10105 -19.39101 -18.88133 -17.58442 -17.21455 -16.82138 -16.38336 -15.77725 -15.47098 -14.83115 -14.62688 -14.10066 -13.40452 -13.20320 -12.46476 -12.16878 -12.02750 -11.91595 -11.70948 -11.52629 -11.46194 -11.35854 -11.27584 -11.21547 -10.85162 -10.77286 -10.43344 -10.31402 -9.70440 -9.51414 -9.45374 -8.53914 -7.95044 -7.65458 -7.11820 -4.78728 0.83838 1.90031 2.26048 2.57099 2.88587 2.91212 2.96666 2.98586 3.03787 3.46008 3.67890 4.22452 4.31584 4.64355 4.88986 5.00504 5.31076 5.41802 5.51030 6.04677 6.17894 6.27097 6.54707 6.71847 6.79788 6.98222 7.06899 7.14611 7.39181 7.43960 7.70523 7.79860 7.99145 8.36201 8.53199 8.68262 8.81953 9.79531 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.005271 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.197826 B = 5310.617563 C = 6115.421222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.433 4.433 8 H 0.087 0.913 9 C 0.140 3.860 10 C -0.239 4.239 11 C -0.002 4.002 12 C -0.783 4.783 13 S 2.682 3.318 14 O -0.940 6.940 15 O -0.970 6.970 16 N -1.020 6.020 17 C 0.435 3.565 18 N -0.290 5.290 19 N -0.271 5.271 20 C 0.148 3.852 21 N -0.603 5.603 22 H 0.427 0.573 23 C 0.001 3.999 24 C -0.186 4.186 25 H 0.290 0.710 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.424 0.576 29 H 0.225 0.775 30 H 0.117 0.883 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -8.114 9.358 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.152 4.152 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.460 4.460 8 H 0.105 0.895 9 C 0.136 3.864 10 C -0.259 4.259 11 C -0.023 4.023 12 C -0.882 4.882 13 S 2.783 3.217 14 O -0.930 6.930 15 O -0.961 6.961 16 N -0.769 5.769 17 C 0.075 3.925 18 N -0.137 5.137 19 N -0.110 5.110 20 C -0.142 4.142 21 N -0.225 5.225 22 H 0.266 0.734 23 C -0.020 4.020 24 C -0.207 4.207 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.259 0.741 29 H 0.241 0.759 30 H 0.135 0.865 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.599 -7.196 8.620 11.526 hybrid contribution 2.648 -0.486 0.364 2.717 sum 5.247 -7.682 8.985 12.933 Atomic orbital electron populations 1.69829 1.07925 1.30522 1.29796 1.26157 0.94901 1.02157 0.91963 0.86148 0.80721 0.79683 0.79494 1.19082 1.19489 1.18064 1.19950 0.98430 0.91267 1.36327 0.89472 1.17893 0.90134 0.92089 0.86281 1.20994 1.04296 0.92810 1.07831 1.20161 0.91933 0.97420 0.92768 1.28856 1.18966 1.14747 1.25593 1.01962 0.74237 0.74582 0.70961 1.93569 1.33267 1.83889 1.82227 1.93535 1.85612 1.62553 1.54389 1.53612 1.70804 1.31451 1.20993 1.20896 0.92379 0.95557 0.83664 1.74943 1.19457 1.09144 1.10180 1.74082 1.14645 1.22015 1.00211 1.26364 0.98433 0.90678 0.98744 1.44255 1.32873 1.31975 1.13358 0.73357 1.20452 0.96078 0.91229 0.94217 1.21340 0.99849 0.97111 1.02362 0.89817 0.88199 0.87911 0.74081 0.75871 0.86490 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.60 10.97 55.55 0.61 -18.00 16 2 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 3 Si 0.92 17.21 29.59 -169.99 -5.03 12.18 16 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 7 C -0.43 -10.72 9.05 -37.74 -0.34 -11.06 16 8 H 0.09 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.14 3.60 5.57 -106.82 -0.60 3.01 16 10 C -0.24 -5.66 9.80 -38.87 -0.38 -6.04 16 11 C 0.00 -0.05 9.49 -39.66 -0.38 -0.43 16 12 C -0.78 -17.65 5.92 -39.29 -0.23 -17.88 16 13 S 2.68 52.11 5.58 -107.50 -0.60 51.51 16 14 O -0.94 -21.11 16.23 -57.17 -0.93 -22.04 16 15 O -0.97 -19.61 17.26 -57.17 -0.99 -20.60 16 16 N -1.02 -14.81 5.85 30.31 0.18 -14.63 16 17 C 0.43 6.74 8.83 -318.89 -2.82 3.92 16 18 N -0.29 -5.58 10.42 30.31 0.32 -5.27 16 19 N -0.27 -4.59 12.18 29.89 0.36 -4.22 16 20 C 0.15 1.64 13.22 -88.98 -1.18 0.46 16 21 N -0.60 -6.25 6.31 -14.15 -0.09 -6.34 16 22 H 0.43 2.38 8.96 -40.82 -0.37 2.02 16 23 C 0.00 0.02 9.30 -39.66 -0.37 -0.35 16 24 C -0.19 -4.84 8.70 -38.87 -0.34 -5.18 16 25 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 26 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.10 2.01 7.60 -52.49 -0.40 1.61 16 28 H 0.42 4.19 8.95 -34.47 -0.31 3.89 16 29 H 0.23 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 2.86 7.13 -52.49 -0.37 2.49 16 31 H 0.12 3.25 6.18 -52.49 -0.32 2.92 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -34.69 291.86 -10.65 -45.34 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -2.17 Total: 9.65 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -6.72 Total: -31.97 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 1.38 Total: -48.46 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -1.91 Total: -42.64 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 16 Polarization: 52.11 SS G_CDS: -0.60 Total: 51.51 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.69 -10.65 -45.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.003 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds