Wall clock time and date at job start Tue Mar 31 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 119.99750 * 2 1 4 4 H 1.48497 * 109.47389 * 274.66358 * 3 2 1 5 5 H 1.48504 * 109.47380 * 34.66540 * 3 2 1 6 6 H 1.48503 * 109.47148 * 154.66130 * 3 2 1 7 7 C 1.39942 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99906 * 162.22833 * 7 2 1 9 9 C 1.41399 * 119.99857 * 342.23392 * 7 2 1 10 10 C 1.40719 * 120.24181 * 155.28388 * 9 7 2 11 11 C 1.37614 * 119.74235 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25051 * 0.27218 * 11 10 9 13 13 S 1.76198 * 119.75340 * 179.70113 * 12 11 10 14 14 O 1.42096 * 106.40782 * 203.54588 * 13 12 11 15 15 O 1.42106 * 106.39862 * 336.46390 * 13 12 11 16 16 N 1.65599 * 107.21973 * 90.00292 * 13 12 11 17 17 C 1.38577 * 120.00040 * 64.99897 * 16 13 12 18 18 N 1.31218 * 126.46968 * 14.69196 * 17 16 13 19 19 N 1.28528 * 109.85593 * 179.81966 * 18 17 16 20 20 C 1.30292 * 110.05604 * 0.45446 * 19 18 17 21 21 N 1.36447 * 126.47383 * 195.00068 * 17 16 13 22 22 H 0.97002 * 127.14156 * 0.02562 * 21 17 16 23 23 C 1.38640 * 120.49863 * 359.45167 * 12 11 10 24 24 C 1.37618 * 120.24708 * 0.54572 * 23 12 11 25 25 H 0.97000 * 119.99938 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.12765 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.87950 * 179.97438 * 11 10 9 28 28 H 0.97007 * 119.99782 * 245.00376 * 16 13 12 29 29 H 1.07998 * 126.34762 * 179.76400 * 20 19 18 30 30 H 1.08001 * 119.87250 * 180.25455 * 23 12 11 31 31 H 1.07999 * 120.12371 * 179.70399 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1034 -1.3954 5 1 1.4924 2.6222 0.7963 6 1 3.5856 1.4138 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2343 -0.2849 9 6 1.3516 -2.4071 0.3747 10 6 1.8218 -3.6493 -0.0900 11 6 1.1748 -4.8061 0.2802 12 6 0.0604 -4.7503 1.1030 13 16 -0.7626 -6.2390 1.5624 14 8 -2.0945 -5.8743 1.8974 15 8 -0.4476 -7.1970 0.5613 16 7 -0.0590 -6.7764 2.9619 17 6 -0.1663 -6.0280 4.1232 18 7 -0.9983 -5.0363 4.3379 19 7 -0.8276 -4.5722 5.5242 20 6 0.1221 -5.2286 6.1284 21 7 0.5771 -6.1793 5.2573 22 1 1.2824 -6.8268 5.4132 23 6 -0.4082 -3.5325 1.5714 24 6 0.2231 -2.3630 1.2141 25 1 -0.4850 0.8400 0.0004 26 1 2.6866 -3.6946 -0.7352 27 1 1.5336 -5.7606 -0.0755 28 1 0.4284 -7.6151 2.9686 29 1 0.4826 -5.0544 7.1314 30 1 -1.2748 -3.5011 2.2152 31 1 -0.1465 -1.4150 1.5762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081300257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:34 Heat of formation + Delta-G solvation = 2.098809 kcal Electronic energy + Delta-G solvation = -21042.194982 eV Core-core repulsion = 17643.938981 eV Total energy + Delta-G solvation = -3398.256000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.057 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.92021 -39.38365 -38.28152 -36.93846 -36.68279 -35.82047 -34.47487 -32.08237 -31.28991 -30.39014 -27.64585 -24.11217 -23.49955 -23.23317 -22.95756 -20.55074 -20.24685 -19.41691 -18.76189 -18.29444 -17.61732 -17.25731 -16.89271 -16.29681 -15.82445 -15.75068 -15.21349 -14.96945 -14.13921 -13.98821 -13.59232 -13.52483 -13.25877 -13.09758 -13.05014 -12.92397 -12.86896 -12.60847 -12.56465 -12.03492 -11.80258 -11.54540 -11.40174 -11.29420 -11.20665 -9.82120 -9.74176 -9.53521 -8.87940 -6.66663 -0.69496 0.46607 0.88793 1.07828 1.33951 1.38082 1.47752 1.53052 1.92219 2.10442 2.29095 2.52478 2.73724 3.35306 3.50821 3.57588 4.14065 4.30372 4.35058 4.38040 4.44711 4.89145 4.94560 5.10299 5.13496 5.22971 5.53057 5.58766 5.63765 5.80045 5.93207 6.13821 6.34949 6.49824 6.66873 6.80745 7.73029 8.07341 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.005271 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.197826 B = 5310.617563 C = 6115.421222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.462 4.462 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.255 4.255 11 C -0.001 4.001 12 C -0.797 4.797 13 S 2.727 3.273 14 O -0.971 6.971 15 O -0.974 6.974 16 N -1.002 6.002 17 C 0.416 3.584 18 N -0.347 5.347 19 N -0.334 5.334 20 C 0.187 3.813 21 N -0.577 5.577 22 H 0.452 0.548 23 C -0.003 4.003 24 C -0.213 4.213 25 H 0.298 0.702 26 H 0.117 0.883 27 H 0.135 0.865 28 H 0.447 0.553 29 H 0.283 0.717 30 H 0.108 0.892 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -9.243 10.539 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.189 4.189 3 Si 0.812 3.188 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.174 1.174 7 C -0.488 4.488 8 H 0.114 0.886 9 C 0.108 3.892 10 C -0.275 4.275 11 C -0.021 4.021 12 C -0.892 4.892 13 S 2.823 3.177 14 O -0.961 6.961 15 O -0.964 6.964 16 N -0.757 5.757 17 C 0.055 3.945 18 N -0.194 5.194 19 N -0.171 5.171 20 C -0.104 4.104 21 N -0.201 5.201 22 H 0.297 0.703 23 C -0.023 4.023 24 C -0.233 4.233 25 H 0.110 0.890 26 H 0.135 0.865 27 H 0.153 0.847 28 H 0.288 0.712 29 H 0.298 0.702 30 H 0.126 0.874 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.606 -8.338 9.790 13.660 hybrid contribution 2.020 -0.313 0.157 2.050 sum 6.626 -8.651 9.946 14.754 Atomic orbital electron populations 1.69886 1.09655 1.31952 1.30498 1.27119 0.95528 1.05547 0.90702 0.85015 0.79215 0.74685 0.79858 1.18093 1.18941 1.17442 1.20273 0.99030 0.92016 1.37523 0.88554 1.18238 0.90453 0.93620 0.86842 1.21263 1.05266 0.92669 1.08346 1.20520 0.91365 0.98368 0.91860 1.29366 1.18711 1.15815 1.25271 1.00608 0.73021 0.73073 0.71033 1.93535 1.35310 1.84251 1.83015 1.93524 1.85548 1.61899 1.55477 1.52720 1.71054 1.32219 1.19686 1.20798 0.93287 0.95592 0.84871 1.74785 1.21732 1.11010 1.11879 1.73981 1.18088 1.24685 1.00354 1.27505 0.95293 0.87904 0.99728 1.44113 1.32540 1.32089 1.11364 0.70340 1.20438 0.95786 0.91930 0.94121 1.21302 1.01237 0.96917 1.03885 0.89043 0.86510 0.84721 0.71238 0.70198 0.87407 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.54 10.97 21.83 0.24 -40.30 16 2 C 0.03 1.46 5.14 85.26 0.44 1.90 16 3 Si 0.99 35.27 29.59 68.60 2.03 37.30 16 4 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 5 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 6 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 7 C -0.46 -23.42 9.05 23.46 0.21 -23.20 16 8 H 0.10 4.52 7.91 -2.91 -0.02 4.49 16 9 C 0.11 5.96 5.57 -21.29 -0.12 5.84 16 10 C -0.26 -12.16 9.80 22.73 0.22 -11.93 16 11 C 0.00 -0.06 9.49 22.22 0.21 0.16 16 12 C -0.80 -36.01 5.92 22.46 0.13 -35.88 16 13 S 2.73 103.50 5.58 -56.49 -0.32 103.18 16 14 O -0.97 -43.97 16.23 -128.00 -2.08 -46.05 16 15 O -0.97 -37.41 17.26 -128.00 -2.21 -39.62 16 16 N -1.00 -27.13 5.85 -58.02 -0.34 -27.47 16 17 C 0.42 12.26 8.83 260.12 2.30 14.55 16 18 N -0.35 -13.40 10.42 -58.01 -0.60 -14.00 16 19 N -0.33 -11.07 12.18 -59.34 -0.72 -11.80 16 20 C 0.19 3.55 13.22 179.77 2.38 5.93 16 21 N -0.58 -10.08 6.31 -198.68 -1.25 -11.34 16 22 H 0.45 3.06 8.96 -92.71 -0.83 2.23 16 23 C 0.00 -0.13 9.30 22.22 0.21 0.08 16 24 C -0.21 -11.64 8.70 22.73 0.20 -11.44 16 25 H 0.30 13.55 8.30 -92.71 -0.77 12.78 16 26 H 0.12 5.00 8.06 -2.92 -0.02 4.98 16 27 H 0.14 4.94 7.60 -2.91 -0.02 4.92 16 28 H 0.45 7.47 8.95 -96.74 -0.87 6.60 16 29 H 0.28 1.57 8.06 -2.91 -0.02 1.54 16 30 H 0.11 5.60 7.13 -2.91 -0.02 5.58 16 31 H 0.10 5.89 6.18 -2.91 -0.02 5.87 16 Total: -1.00 -79.79 291.86 0.45 -79.34 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.48 Total: 24.76 kcal Atomic # 6 Polarization: -60.18 SS G_CDS: 6.18 Total: -54.01 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -2.68 Total: -104.91 kcal Atomic # 8 Polarization: -81.39 SS G_CDS: -4.29 Total: -85.67 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Atomic # 16 Polarization: 103.50 SS G_CDS: -0.32 Total: 103.18 kcal Total: -79.79 0.45 -79.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081300257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.436 kcal (2) G-P(sol) polarization free energy of solvation -79.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds