Wall clock time and date at job start Tue Mar 31 2020 03:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47285 * 270.00064 * 3 2 1 5 5 H 1.48503 * 109.47054 * 30.00718 * 3 2 1 6 6 H 1.48499 * 109.46822 * 150.00241 * 3 2 1 7 7 C 1.37880 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99614 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46896 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47218 * 179.97438 * 10 9 7 12 12 N 1.40021 * 126.26524 * 269.98178 * 11 10 9 13 13 N 1.23647 * 109.32208 * 179.97438 * 12 11 10 14 14 N 1.40026 * 109.31874 * 0.02562 * 13 12 11 15 15 C 1.40166 * 126.26353 * 179.97438 * 14 13 12 16 16 C 1.38833 * 120.07742 * 125.27424 * 15 14 13 17 17 C 1.38115 * 119.94750 * 180.27725 * 16 15 14 18 18 C 1.38301 * 120.08981 * 359.74424 * 17 16 15 19 19 C 1.38254 * 120.14499 * 359.97438 * 18 17 16 20 20 C 1.38242 * 120.05701 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.04460 * 179.97438 * 20 19 18 22 22 C 1.35053 * 126.26116 * 90.28469 * 11 10 9 23 23 O 1.21820 * 126.79600 * 0.02562 * 22 11 10 24 24 H 0.97002 * 120.00229 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46560 * 60.00772 * 9 7 2 26 26 H 1.08996 * 109.47083 * 300.00621 * 9 7 2 27 27 H 1.09007 * 109.47042 * 60.00111 * 10 9 7 28 28 H 1.08996 * 109.47574 * 300.00090 * 10 9 7 29 29 H 1.08001 * 120.02479 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.95367 * 179.72239 * 17 16 15 31 31 H 1.07994 * 119.92744 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.97004 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 7 1.0993 -5.6479 1.1294 13 7 0.5073 -6.6721 0.7696 14 7 0.4776 -6.7226 -0.6295 15 6 -0.1046 -7.7305 -1.4105 16 6 -1.0498 -7.4054 -2.3740 17 6 -1.6260 -8.4013 -3.1382 18 6 -1.2587 -9.7211 -2.9485 19 6 -0.3135 -10.0484 -1.9940 20 6 0.2670 -9.0565 -1.2258 21 17 1.4534 -9.4679 -0.0270 22 6 1.1177 -5.6256 -1.0885 23 8 1.3002 -5.3216 -2.2540 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6043 0.8895 28 1 2.8718 -3.6044 -0.8904 29 1 -1.3374 -6.3751 -2.5230 30 1 -2.3646 -8.1490 -3.8846 31 1 -1.7112 -10.4976 -3.5471 32 1 -0.0284 -11.0799 -1.8486 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085392119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:40 Heat of formation + Delta-G solvation = 100.730002 kcal Electronic energy + Delta-G solvation = -20467.645328 eV Core-core repulsion = 17071.622590 eV Total energy + Delta-G solvation = -3396.022737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.062 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.72875 -39.63033 -37.76216 -36.67737 -35.57006 -33.87601 -32.65955 -31.16613 -30.23661 -29.59447 -25.58930 -24.42226 -23.45983 -22.52874 -21.77785 -21.01650 -18.73152 -17.20492 -16.92278 -16.56271 -16.02439 -15.74308 -15.35628 -14.92695 -14.55966 -14.15972 -13.86150 -13.58726 -13.32515 -12.94757 -12.78919 -12.60891 -12.29971 -12.01837 -11.77293 -11.71159 -11.16060 -11.08134 -11.00874 -10.65685 -10.41688 -10.12692 -9.98187 -9.38976 -9.23362 -9.00423 -8.69599 -8.48585 -6.13108 -4.18462 0.60603 0.84171 1.25043 1.49488 1.86663 2.58981 3.09930 3.20579 3.27282 3.33643 3.36491 4.28609 4.37011 4.50070 4.68410 4.81695 4.88699 4.99509 5.23825 5.35076 5.41429 5.73166 5.85728 5.92692 6.01778 6.04655 6.11790 6.24169 6.42384 6.48606 7.46187 7.49759 7.80740 7.90456 8.00793 8.16422 8.86489 9.46602 10.98342 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.029412 B = 0.003644 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.748676 B = 7682.319084 C = 8255.882618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.009 3.991 10 C 0.149 3.851 11 N -0.448 5.448 12 N 0.037 4.963 13 N 0.015 4.985 14 N -0.438 5.438 15 C 0.179 3.821 16 C -0.089 4.089 17 C -0.099 4.099 18 C -0.102 4.102 19 C -0.101 4.101 20 C -0.029 4.029 21 Cl -0.049 7.049 22 C 0.647 3.353 23 O -0.518 6.518 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.027 0.973 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 -20.944 -3.561 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.565 4.565 8 H 0.080 0.920 9 C -0.030 4.030 10 C 0.031 3.969 11 N -0.279 5.279 12 N 0.040 4.960 13 N 0.018 4.982 14 N -0.262 5.262 15 C 0.087 3.913 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.058 4.058 21 Cl -0.020 7.020 22 C 0.345 3.655 23 O -0.385 6.385 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.178 -20.819 -3.160 21.170 hybrid contribution 0.574 1.179 -0.504 1.405 sum -1.604 -19.641 -3.664 20.044 Atomic orbital electron populations 1.69969 1.06197 1.27044 1.49585 1.24997 0.94886 0.99478 0.94735 0.86471 0.79755 0.82827 0.78244 1.20491 1.21105 1.19638 1.20944 0.93146 0.89970 1.52419 0.91994 1.19524 0.94355 0.90496 0.98586 1.22451 0.94745 0.75934 1.03741 1.50798 1.52631 1.23081 1.01438 1.79523 1.05745 0.98251 1.12491 1.79828 1.13585 1.13388 0.91368 1.47089 1.53134 1.22133 1.03821 1.16840 0.96056 0.84255 0.94137 1.21239 0.93441 1.01541 0.94770 1.21158 0.99583 0.92101 0.98925 1.21250 0.96692 0.96854 0.97320 1.20988 0.96891 0.98769 0.95377 1.21022 0.96118 0.92875 0.95800 1.98398 1.55290 1.93459 1.54868 1.16946 0.81243 0.81036 0.86240 1.91139 1.61580 1.72091 1.13740 0.92693 0.95737 0.95446 0.88810 0.88752 0.84048 0.84165 0.84310 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.27 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.22 5.30 -27.88 -0.15 0.07 16 10 C 0.15 3.04 6.33 -4.05 -0.03 3.01 16 11 N -0.45 -8.84 3.62 -65.03 -0.24 -9.08 16 12 N 0.04 0.67 13.55 60.35 0.82 1.49 16 13 N 0.01 0.25 12.52 60.35 0.76 1.01 16 14 N -0.44 -7.52 3.25 -13.98 -0.05 -7.56 16 15 C 0.18 2.58 6.09 -83.56 -0.51 2.07 16 16 C -0.09 -1.11 9.61 -39.41 -0.38 -1.49 16 17 C -0.10 -0.87 10.04 -39.60 -0.40 -1.27 16 18 C -0.10 -0.76 10.04 -39.55 -0.40 -1.16 16 19 C -0.10 -0.89 9.82 -39.57 -0.39 -1.28 16 20 C -0.03 -0.35 6.34 -39.32 -0.25 -0.60 16 21 Cl -0.05 -0.61 27.61 -51.86 -1.43 -2.05 16 22 C 0.65 12.89 8.58 -86.42 -0.74 12.15 16 23 O -0.52 -11.44 17.64 5.08 0.09 -11.35 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 28 H 0.09 1.88 8.12 -51.93 -0.42 1.45 16 29 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -31.68 309.88 -6.23 -37.91 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -2.92 Total: -4.10 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -3.65 Total: -1.45 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 2.03 Total: -39.70 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.43 Total: -2.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.68 -6.23 -37.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085392119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.642 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds