Wall clock time and date at job start Tue Mar 31 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47285 * 270.00064 * 3 2 1 5 5 H 1.48503 * 109.47054 * 30.00718 * 3 2 1 6 6 H 1.48499 * 109.46822 * 150.00241 * 3 2 1 7 7 C 1.37880 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99614 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46896 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47218 * 179.97438 * 10 9 7 12 12 N 1.40021 * 126.26524 * 269.98178 * 11 10 9 13 13 N 1.23647 * 109.32208 * 179.97438 * 12 11 10 14 14 N 1.40026 * 109.31874 * 0.02562 * 13 12 11 15 15 C 1.40166 * 126.26353 * 179.97438 * 14 13 12 16 16 C 1.38833 * 120.07742 * 125.27424 * 15 14 13 17 17 C 1.38115 * 119.94750 * 180.27725 * 16 15 14 18 18 C 1.38301 * 120.08981 * 359.74424 * 17 16 15 19 19 C 1.38254 * 120.14499 * 359.97438 * 18 17 16 20 20 C 1.38242 * 120.05701 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.04460 * 179.97438 * 20 19 18 22 22 C 1.35053 * 126.26116 * 90.28469 * 11 10 9 23 23 O 1.21820 * 126.79600 * 0.02562 * 22 11 10 24 24 H 0.97002 * 120.00229 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46560 * 60.00772 * 9 7 2 26 26 H 1.08996 * 109.47083 * 300.00621 * 9 7 2 27 27 H 1.09007 * 109.47042 * 60.00111 * 10 9 7 28 28 H 1.08996 * 109.47574 * 300.00090 * 10 9 7 29 29 H 1.08001 * 120.02479 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.95367 * 179.72239 * 17 16 15 31 31 H 1.07994 * 119.92744 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.97004 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 7 1.0993 -5.6479 1.1294 13 7 0.5073 -6.6721 0.7696 14 7 0.4776 -6.7226 -0.6295 15 6 -0.1046 -7.7305 -1.4105 16 6 -1.0498 -7.4054 -2.3740 17 6 -1.6260 -8.4013 -3.1382 18 6 -1.2587 -9.7211 -2.9485 19 6 -0.3135 -10.0484 -1.9940 20 6 0.2670 -9.0565 -1.2258 21 17 1.4534 -9.4679 -0.0270 22 6 1.1177 -5.6256 -1.0885 23 8 1.3002 -5.3216 -2.2540 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6043 0.8895 28 1 2.8718 -3.6044 -0.8904 29 1 -1.3374 -6.3751 -2.5230 30 1 -2.3646 -8.1490 -3.8846 31 1 -1.7112 -10.4976 -3.5471 32 1 -0.0284 -11.0799 -1.8486 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085392119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:37 Heat of formation + Delta-G solvation = 81.220337 kcal Electronic energy + Delta-G solvation = -20468.491330 eV Core-core repulsion = 17071.622590 eV Total energy + Delta-G solvation = -3396.868740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.062 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -44.18768 -40.52103 -39.32722 -37.59875 -37.08949 -35.47012 -34.46503 -31.97670 -31.88234 -30.86584 -27.45387 -25.65356 -24.81089 -23.76210 -22.99645 -22.69338 -19.91583 -18.86235 -18.32489 -17.76392 -17.58024 -17.28904 -16.60784 -16.38031 -15.78876 -15.22037 -14.98642 -14.85947 -14.81960 -14.60597 -14.37703 -14.22022 -13.77221 -13.08550 -12.99498 -12.89596 -12.64822 -12.63804 -12.30188 -12.19943 -12.07509 -11.86574 -11.54702 -11.45533 -10.62930 -10.58332 -10.04739 -9.77433 -8.26251 -6.39688 -0.34756 -0.15104 0.03164 0.12399 0.94813 1.05649 1.42809 1.44405 1.55533 1.69996 2.36696 2.39957 3.04267 3.09215 3.54733 3.78785 3.92156 3.97921 4.20976 4.22113 4.33499 4.37341 4.53582 4.60168 4.64454 4.95930 4.99774 5.18658 5.28527 5.34311 5.40059 5.65986 5.70521 6.03429 6.37218 6.52732 6.75278 7.30908 8.86625 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.029412 B = 0.003644 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.748676 B = 7682.319084 C = 8255.882618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.019 3.981 10 C 0.163 3.837 11 N -0.457 5.457 12 N 0.029 4.971 13 N 0.028 4.972 14 N -0.424 5.424 15 C 0.131 3.869 16 C -0.109 4.109 17 C -0.090 4.090 18 C -0.079 4.079 19 C -0.093 4.093 20 C -0.040 4.040 21 Cl -0.060 7.060 22 C 0.639 3.361 23 O -0.548 6.548 24 H 0.265 0.735 25 H -0.015 1.015 26 H 0.002 0.998 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.172 0.828 31 H 0.187 0.813 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 -22.781 -4.395 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.580 4.580 8 H 0.097 0.903 9 C -0.020 4.020 10 C 0.044 3.956 11 N -0.287 5.287 12 N 0.032 4.968 13 N 0.032 4.968 14 N -0.248 5.248 15 C 0.040 3.960 16 C -0.130 4.130 17 C -0.109 4.109 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.069 4.069 21 Cl -0.031 7.031 22 C 0.338 3.662 23 O -0.419 6.419 24 H 0.074 0.926 25 H 0.003 0.997 26 H 0.020 0.980 27 H 0.138 0.862 28 H 0.119 0.881 29 H 0.139 0.861 30 H 0.189 0.811 31 H 0.204 0.796 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.922 -22.703 -3.975 23.128 hybrid contribution 0.344 1.556 -0.318 1.625 sum -1.578 -21.146 -4.293 21.635 Atomic orbital electron populations 1.70120 1.08162 1.28116 1.50901 1.26029 0.95727 1.03723 0.94179 0.85306 0.78788 0.77653 0.78459 1.19969 1.20951 1.17853 1.21434 0.94165 0.90703 1.51706 0.90298 1.19306 0.94575 0.92689 0.95411 1.22153 0.93414 0.74708 1.05300 1.50692 1.52854 1.23101 1.02034 1.79555 1.06781 0.98615 1.11872 1.79745 1.12419 1.12718 0.91890 1.47179 1.52218 1.21951 1.03481 1.17343 0.98375 0.84531 0.95735 1.21314 0.94244 1.01774 0.95652 1.21569 0.99121 0.91937 0.98230 1.21813 0.94746 0.97144 0.95972 1.21460 0.96080 0.99365 0.94288 1.21233 0.96571 0.92634 0.96475 1.98390 1.55858 1.93350 1.55493 1.17071 0.81457 0.81786 0.85905 1.91091 1.62923 1.73072 1.14782 0.92612 0.99654 0.97994 0.86227 0.88136 0.86126 0.81077 0.79595 0.80892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.54 -29.76 9.11 25.60 0.23 -29.53 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.02 0.98 5.30 29.85 0.16 1.14 16 10 C 0.16 6.77 6.33 86.38 0.55 7.31 16 11 N -0.46 -18.62 3.62 -477.66 -1.73 -20.35 16 12 N 0.03 1.07 13.55 37.02 0.50 1.57 16 13 N 0.03 0.99 12.52 37.02 0.46 1.46 16 14 N -0.42 -15.04 3.25 -316.15 -1.03 -16.06 16 15 C 0.13 3.78 6.09 38.12 0.23 4.02 16 16 C -0.11 -2.71 9.61 22.38 0.22 -2.50 16 17 C -0.09 -1.33 10.04 22.26 0.22 -1.10 16 18 C -0.08 -0.80 10.04 22.29 0.22 -0.58 16 19 C -0.09 -1.32 9.82 22.27 0.22 -1.10 16 20 C -0.04 -0.93 6.34 22.44 0.14 -0.79 16 21 Cl -0.06 -1.45 27.61 -2.72 -0.08 -1.53 16 22 C 0.64 26.55 8.58 178.88 1.53 28.09 16 23 O -0.55 -25.36 17.64 -4.73 -0.08 -25.44 16 24 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 25 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 26 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.12 4.33 8.14 -2.38 -0.02 4.31 16 28 H 0.10 4.06 8.12 -2.39 -0.02 4.04 16 29 H 0.12 3.42 8.06 -2.91 -0.02 3.39 16 30 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 31 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 32 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -72.23 309.88 5.71 -66.52 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: 1.16 Total: -0.54 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.19 Total: 5.53 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -1.51 Total: -89.85 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.08 Total: -25.44 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -72.23 5.71 -66.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085392119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.742 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds