Wall clock time and date at job start Tue Mar 31 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34706 * 117.00317 * 2 1 4 4 O 1.21474 * 120.00061 * 0.02562 * 3 2 1 5 5 C 1.47745 * 120.00091 * 180.02562 * 3 2 1 6 6 C 1.39663 * 120.11343 * 359.97438 * 5 3 2 7 7 C 1.37974 * 119.99813 * 180.02562 * 6 5 3 8 8 C 1.38249 * 120.23413 * 0.02562 * 7 6 5 9 9 N 1.48019 * 119.88695 * 180.27465 * 8 7 6 10 10 O 1.21797 * 119.99795 * 353.80567 * 9 8 7 11 11 O 1.21796 * 120.00147 * 173.80298 * 9 8 7 12 12 C 1.38990 * 120.23325 * 0.02562 * 8 7 6 13 13 N 1.39714 * 120.00601 * 179.97438 * 12 8 7 14 14 C 1.46500 * 119.99799 * 185.68621 * 13 12 8 15 15 H 1.08996 * 109.47295 * 35.00033 * 14 13 12 16 16 C 1.53001 * 109.47177 * 274.99514 * 14 13 12 17 17 C 1.50702 * 109.46870 * 154.99798 * 14 13 12 18 18 H 1.08005 * 119.99909 * 0.02562 * 17 14 13 19 19 C 1.37881 * 120.00248 * 179.97438 * 17 14 13 20 20 N 1.31517 * 119.99510 * 0.02562 * 19 17 14 21 21 Si 1.86792 * 119.99998 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47641 * 90.00541 * 21 19 17 23 23 H 1.48504 * 109.47072 * 210.00286 * 21 19 17 24 24 H 1.48504 * 109.47151 * 329.99786 * 21 19 17 25 25 C 1.38672 * 119.99299 * 359.97438 * 12 8 7 26 26 H 1.08995 * 109.46982 * 59.99238 * 1 2 3 27 27 H 1.08999 * 109.47138 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46762 * 299.99871 * 1 2 3 29 29 H 1.07997 * 120.00592 * 359.97438 * 6 5 3 30 30 H 1.08002 * 119.88157 * 179.97438 * 7 6 5 31 31 H 0.96995 * 119.99798 * 5.68575 * 13 12 8 32 32 H 1.09000 * 109.47133 * 300.00846 * 16 14 13 33 33 H 1.09006 * 109.46614 * 60.00584 * 16 14 13 34 34 H 1.08998 * 109.46893 * 180.02562 * 16 14 13 35 35 H 0.96993 * 119.99667 * 179.97438 * 20 19 17 36 36 H 1.08004 * 120.11215 * 179.97438 * 25 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5391 1.2775 -0.0006 6 6 4.3020 0.1076 -0.0006 7 6 5.6797 0.1826 -0.0006 8 6 6.3099 1.4130 0.0000 9 7 7.7884 1.4845 -0.0062 10 8 8.4477 0.4661 0.1021 11 8 8.3456 2.5616 -0.1196 12 6 5.5602 2.5834 0.0010 13 7 6.2020 3.8243 0.0021 14 6 5.4171 5.0548 0.1290 15 1 4.5674 4.8775 0.7882 16 6 4.9118 5.4820 -1.2506 17 6 6.2822 6.1451 0.7068 18 1 7.3137 5.9419 0.9543 19 6 5.7573 7.4024 0.9184 20 7 4.5015 7.6500 0.6165 21 14 6.8299 8.7540 1.6340 22 1 7.4992 9.4906 0.5319 23 1 5.9866 9.6932 2.4163 24 1 7.8566 8.1528 2.5228 25 6 4.1749 2.5192 0.0010 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8137 -0.8556 0.0003 30 1 6.2678 -0.7233 -0.0002 31 1 7.1672 3.8712 -0.0811 32 1 5.7616 5.6592 -1.9099 33 1 4.2861 4.6933 -1.6685 34 1 4.3283 6.3977 -1.1562 35 1 4.1321 8.5343 0.7658 36 1 3.5904 3.4274 0.0023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097082453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:42 Heat of formation + Delta-G solvation = -54.537014 kcal Electronic energy + Delta-G solvation = -23513.566068 eV Core-core repulsion = 19773.641627 eV Total energy + Delta-G solvation = -3739.924442 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.91487 -40.65843 -39.12673 -36.68081 -36.52937 -35.77118 -33.16440 -32.02018 -30.29196 -28.39073 -28.06016 -26.25837 -25.38152 -23.42097 -22.74687 -21.23117 -20.47489 -18.92597 -18.43491 -18.21212 -17.30187 -17.16648 -16.75330 -16.49693 -15.53886 -15.45438 -14.57198 -14.38391 -14.13947 -13.82109 -13.61187 -13.22145 -13.17533 -12.66717 -12.33765 -12.10614 -11.65794 -11.36136 -11.23485 -11.12632 -10.97388 -10.90154 -10.87747 -10.81932 -10.66684 -10.41136 -10.28578 -10.00002 -9.50738 -9.26683 -8.65859 -7.32574 -6.29914 -4.39510 -0.08225 1.25451 1.41903 1.79077 2.43770 2.44553 3.18864 3.25774 3.29300 3.57939 3.78928 4.26633 4.46316 4.54986 4.90288 4.95272 5.00673 5.03406 5.08162 5.10720 5.30881 5.59196 5.78856 5.93529 6.12273 6.16135 6.32891 6.43409 6.64434 6.71497 6.78286 7.01652 7.48155 7.54239 7.56934 7.77661 7.90059 7.98261 8.34436 8.66851 9.28499 10.76265 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.005425 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.904602 B = 5159.750003 C = 7136.842090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.506 3.494 4 O -0.487 6.487 5 C -0.032 4.032 6 C -0.156 4.156 7 C -0.017 4.017 8 C -0.132 4.132 9 N 0.057 4.943 10 O -0.179 6.179 11 O -0.200 6.200 12 C 0.288 3.712 13 N -0.668 5.668 14 C 0.250 3.750 15 H 0.048 0.952 16 C -0.155 4.155 17 C -0.536 4.536 18 H 0.067 0.933 19 C 0.069 3.931 20 N -0.884 5.884 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.271 1.271 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.418 0.582 32 H 0.036 0.964 33 H 0.015 0.985 34 H 0.098 0.902 35 H 0.267 0.733 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 -14.895 -1.853 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.350 3.650 4 O -0.374 6.374 5 C -0.035 4.035 6 C -0.178 4.178 7 C -0.036 4.036 8 C -0.225 4.225 9 N 0.562 4.438 10 O -0.391 6.391 11 O -0.398 6.398 12 C 0.165 3.835 13 N -0.297 5.297 14 C 0.149 3.851 15 H 0.066 0.934 16 C -0.214 4.214 17 C -0.574 4.574 18 H 0.085 0.915 19 C -0.134 4.134 20 N -0.521 5.521 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.152 4.152 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.266 0.734 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.645 -14.096 -1.832 15.691 hybrid contribution 0.967 0.879 0.316 1.345 sum -5.679 -13.217 -1.516 14.465 Atomic orbital electron populations 1.23314 0.75786 1.03785 1.02895 1.86536 1.23661 1.32339 1.84351 1.21129 0.88944 0.81639 0.73318 1.90905 1.66542 1.35888 1.44053 1.19085 0.89191 0.94348 1.00866 1.20877 0.91847 0.98148 1.06942 1.20564 0.94648 0.95459 0.92947 1.20615 0.78302 0.95756 1.27841 1.43395 1.03427 1.00016 0.96939 1.94460 1.65105 1.25329 1.54179 1.94226 1.72796 1.16760 1.56062 1.17627 0.91488 0.85770 0.88650 1.47298 1.12963 1.02905 1.66484 1.19182 0.91989 0.79487 0.94482 0.93448 1.22232 1.00023 1.02201 0.96936 1.21116 0.98011 0.94704 1.43602 0.91454 1.24870 0.95248 0.98444 0.94888 1.69860 1.12869 1.22644 1.46744 0.86346 0.80070 0.81014 0.79206 1.20294 1.20956 1.19605 1.21053 0.91527 0.98624 1.03995 0.91669 0.87887 0.91634 0.83337 0.83093 0.73409 0.94498 0.96557 0.88324 0.92276 0.81799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -3.97 9.81 -40.51 -0.40 -4.37 16 3 C 0.51 7.20 7.90 34.62 0.27 7.47 16 4 O -0.49 -8.33 16.13 -19.25 -0.31 -8.64 16 5 C -0.03 -0.46 5.87 -105.01 -0.62 -1.07 16 6 C -0.16 -1.87 9.61 -39.15 -0.38 -2.24 16 7 C -0.02 -0.22 9.53 -39.67 -0.38 -0.60 16 8 C -0.13 -2.19 6.86 -79.66 -0.55 -2.74 16 9 N 0.06 1.04 4.45 34.10 0.15 1.19 16 10 O -0.18 -3.14 18.45 -29.46 -0.54 -3.68 16 11 O -0.20 -3.97 15.69 -29.46 -0.46 -4.43 16 12 C 0.29 5.25 6.61 -83.83 -0.55 4.70 16 13 N -0.67 -13.87 5.12 -53.32 -0.27 -14.14 16 14 C 0.25 5.85 2.23 -69.08 -0.15 5.70 16 15 H 0.05 1.18 6.75 -51.93 -0.35 0.83 16 16 C -0.16 -3.52 9.10 37.16 0.34 -3.18 16 17 C -0.54 -13.84 8.73 -34.44 -0.30 -14.14 16 18 H 0.07 1.74 7.74 -52.48 -0.41 1.33 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -23.56 11.32 55.43 0.63 -22.93 16 21 Si 0.91 20.35 29.54 -169.99 -5.02 15.32 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.13 -2.22 8.24 -38.95 -0.32 -2.54 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.15 1.34 7.61 -52.49 -0.40 0.94 16 30 H 0.15 1.60 7.61 -52.49 -0.40 1.20 16 31 H 0.42 8.81 4.96 -41.33 -0.20 8.61 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.02 0.32 7.21 -51.93 -0.37 -0.05 16 34 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 35 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.16 3.09 5.44 -52.48 -0.29 2.81 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -28.25 316.62 -6.68 -34.92 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.56 Total: 7.56 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.66 Total: -5.58 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.51 Total: -35.89 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.71 Total: -21.12 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.25 -6.68 -34.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097082453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.612 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds