Wall clock time and date at job start Tue Mar 31 2020 04:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34706 * 117.00317 * 2 1 4 4 O 1.21474 * 120.00061 * 0.02562 * 3 2 1 5 5 C 1.47745 * 120.00091 * 180.02562 * 3 2 1 6 6 C 1.39663 * 120.11343 * 359.97438 * 5 3 2 7 7 C 1.37974 * 119.99813 * 180.02562 * 6 5 3 8 8 C 1.38249 * 120.23413 * 0.02562 * 7 6 5 9 9 N 1.48019 * 119.88695 * 180.27465 * 8 7 6 10 10 O 1.21797 * 119.99795 * 353.80567 * 9 8 7 11 11 O 1.21796 * 120.00147 * 173.80298 * 9 8 7 12 12 C 1.38990 * 120.23325 * 0.02562 * 8 7 6 13 13 N 1.39714 * 120.00601 * 179.97438 * 12 8 7 14 14 C 1.46500 * 119.99799 * 185.68621 * 13 12 8 15 15 H 1.08996 * 109.47295 * 35.00033 * 14 13 12 16 16 C 1.53001 * 109.47177 * 274.99514 * 14 13 12 17 17 C 1.50702 * 109.46870 * 154.99798 * 14 13 12 18 18 H 1.08005 * 119.99909 * 0.02562 * 17 14 13 19 19 C 1.37881 * 120.00248 * 179.97438 * 17 14 13 20 20 N 1.31517 * 119.99510 * 0.02562 * 19 17 14 21 21 Si 1.86792 * 119.99998 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47641 * 90.00541 * 21 19 17 23 23 H 1.48504 * 109.47072 * 210.00286 * 21 19 17 24 24 H 1.48504 * 109.47151 * 329.99786 * 21 19 17 25 25 C 1.38672 * 119.99299 * 359.97438 * 12 8 7 26 26 H 1.08995 * 109.46982 * 59.99238 * 1 2 3 27 27 H 1.08999 * 109.47138 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46762 * 299.99871 * 1 2 3 29 29 H 1.07997 * 120.00592 * 359.97438 * 6 5 3 30 30 H 1.08002 * 119.88157 * 179.97438 * 7 6 5 31 31 H 0.96995 * 119.99798 * 5.68575 * 13 12 8 32 32 H 1.09000 * 109.47133 * 300.00846 * 16 14 13 33 33 H 1.09006 * 109.46614 * 60.00584 * 16 14 13 34 34 H 1.08998 * 109.46893 * 180.02562 * 16 14 13 35 35 H 0.96993 * 119.99667 * 179.97438 * 20 19 17 36 36 H 1.08004 * 120.11215 * 179.97438 * 25 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5391 1.2775 -0.0006 6 6 4.3020 0.1076 -0.0006 7 6 5.6797 0.1826 -0.0006 8 6 6.3099 1.4130 0.0000 9 7 7.7884 1.4845 -0.0062 10 8 8.4477 0.4661 0.1021 11 8 8.3456 2.5616 -0.1196 12 6 5.5602 2.5834 0.0010 13 7 6.2020 3.8243 0.0021 14 6 5.4171 5.0548 0.1290 15 1 4.5674 4.8775 0.7882 16 6 4.9118 5.4820 -1.2506 17 6 6.2822 6.1451 0.7068 18 1 7.3137 5.9419 0.9543 19 6 5.7573 7.4024 0.9184 20 7 4.5015 7.6500 0.6165 21 14 6.8299 8.7540 1.6340 22 1 7.4992 9.4906 0.5319 23 1 5.9866 9.6932 2.4163 24 1 7.8566 8.1528 2.5228 25 6 4.1749 2.5192 0.0010 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8137 -0.8556 0.0003 30 1 6.2678 -0.7233 -0.0002 31 1 7.1672 3.8712 -0.0811 32 1 5.7616 5.6592 -1.9099 33 1 4.2861 4.6933 -1.6685 34 1 4.3283 6.3977 -1.1562 35 1 4.1321 8.5343 0.7658 36 1 3.5904 3.4274 0.0023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097082453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:41 Heat of formation + Delta-G solvation = -70.283576 kcal Electronic energy + Delta-G solvation = -23514.248890 eV Core-core repulsion = 19773.641627 eV Total energy + Delta-G solvation = -3740.607264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.31521 -41.78733 -40.40171 -38.09308 -37.62244 -37.31184 -34.90774 -33.36211 -31.85512 -29.73058 -29.17828 -27.54393 -27.22161 -24.73514 -24.09839 -22.39942 -22.12491 -20.29514 -19.78623 -19.49791 -18.69996 -18.57453 -18.12934 -17.49302 -17.21580 -16.88682 -16.17710 -15.70798 -15.21251 -15.13512 -14.98239 -14.40961 -14.37664 -14.25613 -13.74972 -13.27458 -13.11920 -13.00620 -12.86688 -12.67583 -12.55825 -12.37627 -12.33311 -12.23268 -12.02772 -11.85701 -11.80359 -11.48095 -11.16049 -10.75497 -10.61682 -8.77254 -8.27704 -6.44211 -1.39150 -0.04297 0.18997 0.43417 1.25256 1.39519 1.40461 1.43588 1.51086 2.24445 2.37983 2.47440 3.02854 3.24305 3.46724 3.75243 3.84265 3.91346 4.32035 4.36436 4.46856 4.53260 4.59535 4.72493 4.78718 4.81190 4.89276 4.99362 5.13687 5.14964 5.20989 5.43884 5.52135 5.68174 5.94334 6.14301 6.46790 6.50196 6.61554 6.84461 7.27146 8.77649 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.005425 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.904602 B = 5159.750003 C = 7136.842090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.340 6.340 3 C 0.511 3.489 4 O -0.524 6.524 5 C -0.025 4.025 6 C -0.121 4.121 7 C -0.003 4.003 8 C -0.132 4.132 9 N 0.054 4.946 10 O -0.137 6.137 11 O -0.255 6.255 12 C 0.269 3.731 13 N -0.691 5.691 14 C 0.263 3.737 15 H 0.022 0.978 16 C -0.141 4.141 17 C -0.555 4.555 18 H 0.059 0.941 19 C 0.026 3.974 20 N -0.908 5.908 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.271 1.271 25 C -0.154 4.154 26 H 0.063 0.937 27 H 0.144 0.856 28 H 0.062 0.938 29 H 0.196 0.804 30 H 0.191 0.809 31 H 0.413 0.587 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.269 0.731 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 -18.390 -1.735 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.256 6.256 3 C 0.356 3.644 4 O -0.414 6.414 5 C -0.028 4.028 6 C -0.142 4.142 7 C -0.022 4.022 8 C -0.225 4.225 9 N 0.558 4.442 10 O -0.362 6.362 11 O -0.440 6.440 12 C 0.150 3.850 13 N -0.323 5.323 14 C 0.160 3.840 15 H 0.040 0.960 16 C -0.200 4.200 17 C -0.593 4.593 18 H 0.077 0.923 19 C -0.175 4.175 20 N -0.546 5.546 21 Si 0.791 3.209 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.196 1.196 25 C -0.177 4.177 26 H 0.082 0.918 27 H 0.162 0.838 28 H 0.081 0.919 29 H 0.213 0.787 30 H 0.208 0.792 31 H 0.261 0.739 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.984 -17.529 -1.733 18.948 hybrid contribution 0.948 1.568 0.289 1.855 sum -6.036 -15.961 -1.444 17.125 Atomic orbital electron populations 1.23701 0.73727 1.06420 1.02742 1.86519 1.25515 1.30110 1.83414 1.21092 0.88765 0.82049 0.72497 1.90904 1.67244 1.37411 1.45803 1.19242 0.89833 0.94172 0.99538 1.21387 0.91149 0.98792 1.02836 1.21093 0.95254 0.95049 0.90800 1.20949 0.77339 0.96558 1.27611 1.43623 1.04091 0.99790 0.96666 1.94411 1.65513 1.24894 1.51423 1.94261 1.73323 1.17291 1.59167 1.17780 0.91971 0.85464 0.89783 1.46897 1.12311 1.03014 1.70035 1.18737 0.91057 0.80396 0.93824 0.95998 1.22031 0.99594 1.01464 0.96928 1.21411 0.98006 0.95914 1.43954 0.92289 1.25626 0.96364 1.00392 0.95168 1.69972 1.14088 1.23104 1.47435 0.85418 0.78481 0.78402 0.78550 1.19704 1.20373 1.19588 1.20820 0.91060 0.99105 1.06707 0.91840 0.83781 0.91941 0.78710 0.79217 0.73898 0.94873 0.95167 0.90631 0.92164 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.55 16 2 O -0.34 -6.45 9.81 -56.16 -0.55 -7.00 16 3 C 0.51 13.68 7.90 70.34 0.56 14.24 16 4 O -0.52 -18.02 16.13 19.92 0.32 -17.70 16 5 C -0.03 -0.67 5.87 -20.11 -0.12 -0.79 16 6 C -0.12 -2.30 9.61 22.55 0.22 -2.08 16 7 C 0.00 -0.06 9.53 22.21 0.21 0.15 16 8 C -0.13 -4.18 6.86 36.56 0.25 -3.93 16 9 N 0.05 1.89 4.45 -46.03 -0.21 1.69 16 10 O -0.14 -4.41 18.45 18.89 0.35 -4.06 16 11 O -0.26 -10.39 15.69 18.89 0.30 -10.09 16 12 C 0.27 10.00 6.61 38.17 0.25 10.25 16 13 N -0.69 -30.35 5.12 -322.61 -1.65 -32.00 16 14 C 0.26 13.11 2.23 44.25 0.10 13.21 16 15 H 0.02 1.20 6.75 -2.39 -0.02 1.18 16 16 C -0.14 -6.80 9.10 71.98 0.65 -6.14 16 17 C -0.55 -30.10 8.73 25.60 0.22 -29.87 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 19 C 0.03 1.38 5.30 84.66 0.45 1.83 16 20 N -0.91 -50.31 11.32 21.45 0.24 -50.07 16 21 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C -0.15 -5.39 8.24 22.68 0.19 -5.20 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.20 2.08 7.61 -2.91 -0.02 2.05 16 30 H 0.19 2.75 7.61 -2.91 -0.02 2.72 16 31 H 0.41 18.56 4.96 -100.74 -0.50 18.06 16 32 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.03 1.30 7.21 -2.38 -0.02 1.28 16 34 H 0.08 3.96 6.07 -2.39 -0.01 3.95 16 35 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 36 H 0.14 5.55 5.44 -2.91 -0.02 5.53 16 Total: -1.00 -65.02 316.62 5.65 -59.37 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.64 Total: 21.87 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 4.18 Total: -6.79 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -1.61 Total: -80.39 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: 0.42 Total: -38.86 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -65.02 5.65 -59.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097082453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.912 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds