Wall clock time and date at job start Tue Mar 31 2020 03:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47211 * 240.00073 * 3 2 1 5 5 H 1.48498 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47073 * 119.99626 * 3 2 1 7 7 C 1.38816 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99575 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00165 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.53912 * 323.60355 * 10 9 7 12 12 C 1.54232 * 110.74041 * 200.66839 * 10 9 7 13 13 C 1.51320 * 103.55235 * 241.19408 * 12 10 9 14 14 O 1.21223 * 125.39664 * 180.24832 * 13 12 10 15 15 N 1.33882 * 109.20645 * 0.38339 * 13 12 10 16 16 C 1.40240 * 122.76173 * 179.83963 * 15 13 12 17 17 C 1.38821 * 120.04998 * 292.45158 * 16 15 13 18 18 C 1.38121 * 119.94109 * 180.27627 * 17 16 15 19 19 C 1.38381 * 120.05396 * 359.49194 * 18 17 16 20 20 Cl 1.73600 * 119.95044 * 180.25710 * 19 18 17 21 21 C 1.38383 * 120.10384 * 0.50513 * 19 18 17 22 22 C 1.38121 * 120.05144 * 359.75277 * 21 19 18 23 23 C 1.33878 * 114.47159 * 359.57993 * 15 13 12 24 24 O 1.21227 * 125.39025 * 180.24973 * 23 15 13 25 25 H 0.97001 * 119.99947 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00396 * 359.97438 * 9 7 2 27 27 H 1.08996 * 110.60766 * 359.93128 * 12 10 9 28 28 H 1.08999 * 110.60651 * 122.74969 * 12 10 9 29 29 H 1.07990 * 120.03190 * 359.97438 * 17 16 15 30 30 H 1.07998 * 119.97172 * 179.72297 * 18 17 16 31 31 H 1.08005 * 119.97524 * 179.76838 * 21 19 18 32 32 H 1.08000 * 120.02541 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9608 -3.5772 -0.6051 12 6 1.1624 -4.8045 -0.5086 13 6 1.0972 -5.7526 0.6691 14 8 0.4904 -6.8017 0.6932 15 7 1.8136 -5.2476 1.6811 16 6 1.9434 -5.8971 2.9173 17 6 0.8416 -6.0313 3.7511 18 6 0.9733 -6.6664 4.9706 19 6 2.1997 -7.1779 5.3567 20 17 2.3606 -7.9815 6.8871 21 6 3.2993 -7.0454 4.5271 22 6 3.1738 -6.4064 3.3090 23 6 2.4002 -4.0742 1.4141 24 8 3.0952 -3.4456 2.1831 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 0.1694 -4.4330 -0.7616 28 1 1.6183 -5.2942 -1.3690 29 1 -0.1164 -5.6352 3.4488 30 1 0.1175 -6.7671 5.6216 31 1 4.2564 -7.4422 4.8322 32 1 4.0324 -6.3029 2.6620 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100567203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:19 Heat of formation + Delta-G solvation = -20.001455 kcal Electronic energy + Delta-G solvation = -20677.852842 eV Core-core repulsion = 17244.302045 eV Total energy + Delta-G solvation = -3433.550797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.056 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.88105 -39.07110 -38.20287 -36.67997 -35.62595 -34.90100 -32.54089 -31.32081 -30.33129 -28.59453 -25.41102 -23.84145 -23.23253 -22.82390 -21.47326 -19.64079 -17.95431 -17.49358 -16.86531 -16.61546 -16.06665 -15.28949 -15.14635 -14.63059 -14.34399 -13.87201 -13.78627 -13.75010 -13.63693 -13.45487 -13.24932 -12.61975 -12.17562 -11.89837 -11.69612 -11.48241 -11.07159 -11.06078 -10.97884 -10.47444 -10.23794 -10.11868 -9.94146 -9.76535 -9.25362 -9.12639 -8.65557 -7.36654 -6.02824 -3.35780 0.83201 1.09681 1.86336 1.90880 2.68994 3.01518 3.35089 3.39479 3.39910 3.42112 4.36242 4.49725 4.60786 4.65170 4.78539 4.86077 5.03824 5.13138 5.17495 5.28706 5.43274 5.61453 5.68924 5.71191 5.92101 5.99584 6.06555 6.12563 6.18417 6.57186 7.04965 7.53277 7.60986 8.09937 8.21865 9.24393 9.64553 10.00589 11.17806 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.003950 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.567167 B = 7087.028958 C = 7737.703327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.001 3.999 3 Si 0.916 3.084 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.258 4.258 8 H 0.080 0.920 9 N -0.686 5.686 10 C 0.156 3.844 11 H 0.106 0.894 12 C -0.161 4.161 13 C 0.534 3.466 14 O -0.492 6.492 15 N -0.537 5.537 16 C 0.127 3.873 17 C -0.090 4.090 18 C -0.100 4.100 19 C -0.033 4.033 20 Cl -0.071 7.071 21 C -0.101 4.101 22 C -0.091 4.091 23 C 0.490 3.510 24 O -0.466 6.466 25 H 0.261 0.739 26 H 0.392 0.608 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 -14.869 5.431 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.745 3.255 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.039 3.961 11 H 0.124 0.876 12 C -0.201 4.201 13 C 0.324 3.676 14 O -0.364 6.364 15 N -0.280 5.280 16 C 0.038 3.962 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.060 4.060 20 Cl -0.042 7.042 21 C -0.120 4.120 22 C -0.111 4.111 23 C 0.276 3.724 24 O -0.332 6.332 25 H 0.071 0.929 26 H 0.228 0.772 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.718 -14.900 5.968 16.475 hybrid contribution 0.055 0.854 0.472 0.977 sum 3.772 -14.046 6.441 15.906 Atomic orbital electron populations 1.69646 1.05320 1.26695 1.55388 1.24841 0.95588 0.98216 1.01038 0.86146 0.78618 0.82462 0.78256 1.20734 1.21469 1.20768 1.19252 0.91534 0.83136 1.44931 0.90188 1.42429 1.05885 0.98806 1.85458 1.21017 0.97281 0.87710 0.90074 0.87637 1.22872 1.04950 0.95438 0.96869 1.21074 0.75981 0.85741 0.84755 1.90732 1.40576 1.22681 1.82419 1.45193 1.48186 1.22530 1.12121 1.17923 0.94452 0.96801 0.87028 1.21159 0.98845 0.98208 0.92752 1.20908 0.96477 0.98068 0.96426 1.20946 0.95575 1.00663 0.88797 1.98366 1.98098 1.78323 1.29442 1.20889 0.98146 0.99697 0.93250 1.21088 0.96938 0.96461 0.96570 1.24120 0.76790 0.77408 0.94071 1.90680 1.34171 1.53947 1.54380 0.92883 0.77187 0.85651 0.86048 0.84589 0.84249 0.84267 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.07 13.06 55.49 0.72 -25.35 16 2 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.26 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.69 -15.41 5.20 -53.63 -0.28 -15.69 16 10 C 0.16 2.69 3.72 -68.14 -0.25 2.44 16 11 H 0.11 1.68 8.12 -51.93 -0.42 1.26 16 12 C -0.16 -2.16 6.79 -26.93 -0.18 -2.34 16 13 C 0.53 8.21 7.96 -11.08 -0.09 8.12 16 14 O -0.49 -8.47 17.60 5.61 0.10 -8.37 16 15 N -0.54 -8.77 2.61 -59.41 -0.16 -8.93 16 16 C 0.13 1.98 4.94 -83.58 -0.41 1.57 16 17 C -0.09 -1.29 9.81 -39.41 -0.39 -1.68 16 18 C -0.10 -1.22 9.82 -39.57 -0.39 -1.61 16 19 C -0.03 -0.40 6.32 -39.48 -0.25 -0.65 16 20 Cl -0.07 -0.75 28.95 -51.86 -1.50 -2.25 16 21 C -0.10 -1.19 9.82 -39.57 -0.39 -1.58 16 22 C -0.09 -1.24 9.80 -39.41 -0.39 -1.63 16 23 C 0.49 9.15 7.59 -11.09 -0.08 9.07 16 24 O -0.47 -10.36 17.60 5.60 0.10 -10.26 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.39 9.20 7.52 -40.82 -0.31 8.89 16 27 H 0.13 1.66 7.67 -51.93 -0.40 1.26 16 28 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -31.13 307.76 -7.25 -38.38 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -2.79 Total: 6.60 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -3.07 Total: 4.83 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.29 Total: -49.96 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.20 Total: -18.63 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.13 -7.25 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100567203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.379 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds