Wall clock time and date at job start Tue Mar 31 2020 03:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47211 * 240.00073 * 3 2 1 5 5 H 1.48498 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47073 * 119.99626 * 3 2 1 7 7 C 1.38816 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99575 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00165 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.53912 * 323.60355 * 10 9 7 12 12 C 1.54232 * 110.74041 * 200.66839 * 10 9 7 13 13 C 1.51320 * 103.55235 * 241.19408 * 12 10 9 14 14 O 1.21223 * 125.39664 * 180.24832 * 13 12 10 15 15 N 1.33882 * 109.20645 * 0.38339 * 13 12 10 16 16 C 1.40240 * 122.76173 * 179.83963 * 15 13 12 17 17 C 1.38821 * 120.04998 * 292.45158 * 16 15 13 18 18 C 1.38121 * 119.94109 * 180.27627 * 17 16 15 19 19 C 1.38381 * 120.05396 * 359.49194 * 18 17 16 20 20 Cl 1.73600 * 119.95044 * 180.25710 * 19 18 17 21 21 C 1.38383 * 120.10384 * 0.50513 * 19 18 17 22 22 C 1.38121 * 120.05144 * 359.75277 * 21 19 18 23 23 C 1.33878 * 114.47159 * 359.57993 * 15 13 12 24 24 O 1.21227 * 125.39025 * 180.24973 * 23 15 13 25 25 H 0.97001 * 119.99947 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00396 * 359.97438 * 9 7 2 27 27 H 1.08996 * 110.60766 * 359.93128 * 12 10 9 28 28 H 1.08999 * 110.60651 * 122.74969 * 12 10 9 29 29 H 1.07990 * 120.03190 * 359.97438 * 17 16 15 30 30 H 1.07998 * 119.97172 * 179.72297 * 18 17 16 31 31 H 1.08005 * 119.97524 * 179.76838 * 21 19 18 32 32 H 1.08000 * 120.02541 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9608 -3.5772 -0.6051 12 6 1.1624 -4.8045 -0.5086 13 6 1.0972 -5.7526 0.6691 14 8 0.4904 -6.8017 0.6932 15 7 1.8136 -5.2476 1.6811 16 6 1.9434 -5.8971 2.9173 17 6 0.8416 -6.0313 3.7511 18 6 0.9733 -6.6664 4.9706 19 6 2.1997 -7.1779 5.3567 20 17 2.3606 -7.9815 6.8871 21 6 3.2993 -7.0454 4.5271 22 6 3.1738 -6.4064 3.3090 23 6 2.4002 -4.0742 1.4141 24 8 3.0952 -3.4456 2.1831 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 0.1694 -4.4330 -0.7616 28 1 1.6183 -5.2942 -1.3690 29 1 -0.1164 -5.6352 3.4488 30 1 0.1175 -6.7671 5.6216 31 1 4.2564 -7.4422 4.8322 32 1 4.0324 -6.3029 2.6620 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100567203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:19 Heat of formation + Delta-G solvation = -39.342245 kcal Electronic energy + Delta-G solvation = -20678.691522 eV Core-core repulsion = 17244.302045 eV Total energy + Delta-G solvation = -3434.389477 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.056 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.19934 -40.12752 -39.64329 -37.63006 -37.15997 -36.37935 -34.14948 -32.32518 -31.86632 -29.87060 -26.94038 -25.53187 -24.30524 -23.99989 -22.83420 -20.86450 -19.57127 -18.96257 -17.98548 -17.92869 -17.50674 -16.68056 -16.38693 -16.11952 -15.61916 -15.44290 -15.31727 -15.01734 -14.72617 -14.70643 -14.55898 -13.82099 -13.50171 -12.93204 -12.91794 -12.86415 -12.67127 -12.63949 -12.24231 -11.97750 -11.94593 -11.86312 -11.36816 -11.16262 -10.88842 -10.25770 -9.75427 -9.21898 -8.03430 -5.35646 -0.22228 0.09077 0.49757 0.96392 1.40352 1.50233 1.54132 1.57437 1.68168 2.33939 2.52968 3.20955 3.25036 3.52694 3.58841 3.65179 3.69700 3.87281 3.96912 4.09144 4.20029 4.33706 4.55768 4.73978 4.81673 4.85168 4.99125 5.00018 5.11908 5.50737 5.52733 5.72592 6.15076 6.28688 6.81328 7.25314 7.81907 8.08651 9.17675 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.003950 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.567167 B = 7087.028958 C = 7737.703327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.058 4.058 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.253 4.253 8 H 0.081 0.919 9 N -0.700 5.700 10 C 0.151 3.849 11 H 0.126 0.874 12 C -0.142 4.142 13 C 0.538 3.462 14 O -0.507 6.507 15 N -0.534 5.534 16 C 0.092 3.908 17 C -0.107 4.107 18 C -0.097 4.097 19 C -0.035 4.035 20 Cl -0.054 7.054 21 C -0.095 4.095 22 C -0.100 4.100 23 C 0.496 3.504 24 O -0.507 6.507 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.132 0.868 28 H 0.166 0.834 29 H 0.132 0.868 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 -16.297 5.556 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.213 1.213 7 C -0.384 4.384 8 H 0.098 0.902 9 N -0.340 5.340 10 C 0.037 3.963 11 H 0.143 0.857 12 C -0.182 4.182 13 C 0.330 3.670 14 O -0.380 6.380 15 N -0.275 5.275 16 C 0.003 3.997 17 C -0.126 4.126 18 C -0.116 4.116 19 C -0.062 4.062 20 Cl -0.025 7.025 21 C -0.114 4.114 22 C -0.119 4.119 23 C 0.284 3.716 24 O -0.377 6.377 25 H 0.064 0.936 26 H 0.219 0.781 27 H 0.150 0.850 28 H 0.183 0.817 29 H 0.150 0.850 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.635 -16.393 6.086 18.090 hybrid contribution -0.170 1.087 0.549 1.229 sum 4.465 -15.307 6.634 17.270 Atomic orbital electron populations 1.69768 1.06450 1.26699 1.57839 1.25529 0.96319 1.01042 1.02244 0.85276 0.77396 0.79190 0.78269 1.19400 1.21999 1.21309 1.19536 0.91728 0.84461 1.42693 0.90151 1.42457 1.05671 0.99721 1.86132 1.21306 0.98496 0.87022 0.89497 0.85694 1.22866 1.04819 0.93293 0.97180 1.21342 0.75241 0.85601 0.84861 1.90730 1.41156 1.23496 1.82641 1.44996 1.47662 1.21929 1.12918 1.18255 0.95817 0.98478 0.87147 1.21249 0.98520 0.99178 0.93661 1.21141 0.97540 0.97088 0.95836 1.21100 0.95480 1.00147 0.89439 1.98376 1.98041 1.77846 1.28191 1.21190 0.99307 0.98567 0.92313 1.21260 0.96469 0.96655 0.97504 1.23948 0.76106 0.77637 0.93923 1.90656 1.36199 1.55315 1.55514 0.93579 0.78074 0.85008 0.81688 0.84992 0.82076 0.81578 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.93 13.06 21.65 0.28 -54.65 16 2 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 3 Si 0.97 44.26 29.55 68.60 2.03 46.28 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.25 -13.05 9.97 84.04 0.84 -12.21 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.70 -31.22 5.20 -323.59 -1.68 -32.91 16 10 C 0.15 5.03 3.72 44.86 0.17 5.20 16 11 H 0.13 3.70 8.12 -2.38 -0.02 3.68 16 12 C -0.14 -3.47 6.79 30.46 0.21 -3.26 16 13 C 0.54 15.78 7.96 87.99 0.70 16.48 16 14 O -0.51 -16.77 17.60 -2.85 -0.05 -16.82 16 15 N -0.53 -17.09 2.61 -579.69 -1.51 -18.61 16 16 C 0.09 2.82 4.94 38.07 0.19 3.01 16 17 C -0.11 -3.01 9.81 22.38 0.22 -2.79 16 18 C -0.10 -2.25 9.82 22.28 0.22 -2.03 16 19 C -0.03 -0.77 6.32 22.34 0.14 -0.62 16 20 Cl -0.05 -1.00 28.95 -2.72 -0.08 -1.08 16 21 C -0.09 -2.05 9.82 22.28 0.22 -1.84 16 22 C -0.10 -2.61 9.80 22.38 0.22 -2.39 16 23 C 0.50 18.32 7.59 87.99 0.67 18.99 16 24 O -0.51 -22.71 17.60 -2.87 -0.05 -22.76 16 25 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 26 H 0.38 18.13 7.52 -92.71 -0.70 17.43 16 27 H 0.13 3.21 7.67 -2.39 -0.02 3.19 16 28 H 0.17 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.13 3.70 8.06 -2.92 -0.02 3.68 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -67.34 307.76 3.66 -63.68 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.48 Total: 20.97 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 4.25 Total: 15.89 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -2.92 Total: -106.16 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.10 Total: -39.58 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -67.34 3.66 -63.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100567203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.334 kcal (2) G-P(sol) polarization free energy of solvation -67.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds