Wall clock time and date at job start Tue Mar 31 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00585 * 2 1 4 4 O 1.20824 * 119.99488 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00043 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47042 * 180.02562 * 5 3 2 7 7 C 1.36553 * 119.99773 * 263.45035 * 6 5 3 8 8 H 1.07998 * 119.99580 * 201.88897 * 7 6 5 9 9 C 1.39281 * 120.00132 * 21.87758 * 7 6 5 10 10 N 1.31206 * 120.00086 * 6.31658 * 9 7 6 11 11 Si 1.86794 * 119.99865 * 186.31263 * 9 7 6 12 12 H 1.48505 * 109.47395 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47219 * 120.00620 * 11 9 7 14 14 H 1.48503 * 109.47244 * 240.00260 * 11 9 7 15 15 C 1.34777 * 120.00347 * 83.44100 * 6 5 3 16 16 O 1.21558 * 119.99995 * 4.55469 * 15 6 5 17 17 C 1.48171 * 120.00323 * 184.55129 * 15 6 5 18 18 C 1.41283 * 120.55237 * 255.49423 * 17 15 6 19 19 C 1.35180 * 119.83940 * 180.25449 * 18 17 15 20 20 N 1.35796 * 121.00304 * 359.43313 * 19 18 17 21 21 C 1.46499 * 119.42062 * 180.26721 * 20 19 18 22 22 C 1.34592 * 121.15570 * 0.56956 * 20 19 18 23 23 O 1.22023 * 119.94909 * 179.69332 * 22 20 19 24 24 C 1.38531 * 120.55451 * 75.46493 * 17 15 6 25 25 H 1.08995 * 109.47409 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47344 * 300.00441 * 1 2 3 27 27 H 1.09007 * 109.47139 * 59.99673 * 1 2 3 28 28 H 1.08997 * 109.47427 * 59.99828 * 5 3 2 29 29 H 1.09003 * 109.46924 * 299.99761 * 5 3 2 30 30 H 0.96996 * 120.00215 * 179.97438 * 10 9 7 31 31 H 1.07991 * 120.08177 * 359.97438 * 18 17 15 32 32 H 1.07991 * 119.50273 * 179.72442 * 19 18 17 33 33 H 1.08999 * 109.47529 * 270.29890 * 21 20 19 34 34 H 1.09000 * 109.47288 * 30.30341 * 21 20 19 35 35 H 1.09011 * 109.46861 * 150.29603 * 21 20 19 36 36 H 1.08000 * 120.49449 * 0.02562 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6795 0.0002 7 6 4.3043 3.2967 -1.1745 8 1 4.9300 4.1770 -1.1678 9 6 3.8266 2.7908 -2.3810 10 7 2.9684 1.7984 -2.3825 11 14 4.4078 3.5254 -3.9972 12 1 5.3683 4.6247 -3.7244 13 1 5.0756 2.4747 -4.8067 14 1 3.2420 4.0604 -4.7454 15 6 4.0456 3.3629 1.1601 16 8 3.8391 2.7927 2.2136 17 6 4.3676 4.8091 1.1513 18 6 5.6489 5.2620 1.5379 19 6 5.9254 6.5852 1.5294 20 7 4.9919 7.4924 1.1427 21 6 5.3309 8.9177 1.1411 22 6 3.7589 7.1056 0.7665 23 8 2.9353 7.9401 0.4284 24 6 3.4177 5.7398 0.7632 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.9557 0.7807 -0.8908 29 1 3.9564 0.7804 0.8892 30 1 2.6354 1.4463 -3.2227 31 1 6.4040 4.5532 1.8439 32 1 6.9051 6.9257 1.8303 33 1 5.0938 9.3486 2.1138 34 1 6.3954 9.0378 0.9401 35 1 4.7555 9.4271 0.3679 36 1 2.4302 5.4222 0.4626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120615720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:16 Heat of formation + Delta-G solvation = -97.157507 kcal Electronic energy + Delta-G solvation = -24252.100979 eV Core-core repulsion = 20510.328374 eV Total energy + Delta-G solvation = -3741.772605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90829 -39.50606 -38.37033 -36.45378 -35.51281 -34.69837 -33.98799 -31.66838 -29.65881 -28.74740 -27.53029 -26.26713 -24.95976 -23.61606 -22.68964 -20.40947 -19.42817 -17.89170 -17.05378 -16.96220 -16.58474 -16.37728 -15.72195 -15.48824 -15.39968 -15.13014 -14.41791 -14.39182 -13.87545 -13.38454 -13.23638 -13.02687 -12.68175 -12.57403 -12.40634 -12.20696 -11.62707 -11.47284 -11.39456 -11.33346 -11.25595 -10.89810 -10.68843 -10.47025 -9.87341 -9.83975 -9.70461 -9.47822 -9.08810 -8.76019 -8.08145 -7.59648 -6.57062 -4.14613 1.14664 2.19197 2.90115 3.02572 3.14834 3.18684 3.36073 3.65434 3.85502 3.97523 4.05796 4.46802 4.76500 4.82904 4.92934 5.25157 5.39477 5.55386 5.61508 5.66765 5.69479 5.77250 5.81210 5.93804 6.14892 6.26461 6.40656 6.43373 6.69447 6.75817 6.91647 7.23648 7.35542 7.38059 7.51048 8.14017 8.36653 8.85098 9.03963 9.18699 9.57636 10.48067 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.006205 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.217497 B = 4511.660775 C = 5373.800096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.373 6.373 3 C 0.488 3.512 4 O -0.505 6.505 5 C 0.154 3.846 6 N -0.412 5.412 7 C -0.329 4.329 8 H 0.103 0.897 9 C 0.042 3.958 10 N -0.876 5.876 11 Si 0.932 3.068 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.499 3.501 16 O -0.589 6.589 17 C 0.024 3.976 18 C -0.190 4.190 19 C 0.110 3.890 20 N -0.503 5.503 21 C 0.062 3.938 22 C 0.516 3.484 23 O -0.561 6.561 24 C -0.198 4.198 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.275 0.725 31 H 0.146 0.854 32 H 0.161 0.839 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.729 3.284 3.212 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.329 3.671 4 O -0.390 6.390 5 C 0.029 3.971 6 N -0.129 5.129 7 C -0.456 4.456 8 H 0.120 0.880 9 C -0.163 4.163 10 N -0.514 5.514 11 Si 0.758 3.242 12 H -0.192 1.192 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.287 3.713 16 O -0.475 6.475 17 C 0.018 3.982 18 C -0.214 4.214 19 C -0.015 4.015 20 N -0.216 5.216 21 C -0.079 4.079 22 C 0.319 3.681 23 O -0.445 6.445 24 C -0.220 4.220 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.178 0.822 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.776 3.747 3.325 7.646 hybrid contribution -0.086 0.322 -1.073 1.124 sum 5.690 4.069 2.252 7.349 Atomic orbital electron populations 1.22945 0.78636 1.01869 1.01675 1.86448 1.21692 1.35306 1.85614 1.23872 0.92241 0.80579 0.70388 1.90526 1.66595 1.36416 1.45513 1.20623 0.87283 0.85022 1.04211 1.43182 1.55542 1.08190 1.05979 1.19665 1.30322 1.13113 0.82530 0.87955 1.25323 0.94584 0.96250 1.00117 1.69589 1.28321 1.25282 1.28231 0.85775 0.78668 0.78934 0.80841 1.19189 1.20349 1.20467 1.18143 0.83005 0.85703 0.84413 1.90674 1.56432 1.69149 1.31266 1.20377 0.92948 0.94893 0.90030 1.20621 0.97611 0.94267 1.08853 1.21651 0.93947 0.89449 0.96471 1.45305 1.12812 1.08630 1.54804 1.22062 1.01976 0.79796 1.04109 1.17077 0.80801 0.90487 0.79701 1.90899 1.47725 1.54187 1.51691 1.22493 1.02504 0.90121 1.06892 0.89532 0.93089 0.92637 0.84529 0.90098 0.91379 0.83649 0.82209 0.91072 0.90046 0.89044 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.82 16 2 O -0.37 -8.00 10.56 -39.26 -0.41 -8.41 16 3 C 0.49 11.99 6.09 36.00 0.22 12.21 16 4 O -0.51 -13.97 15.84 -18.75 -0.30 -14.27 16 5 C 0.15 3.61 5.16 -5.20 -0.03 3.58 16 6 N -0.41 -10.14 2.17 -117.08 -0.25 -10.40 16 7 C -0.33 -8.07 8.94 -15.06 -0.13 -8.21 16 8 H 0.10 2.43 6.93 -52.49 -0.36 2.07 16 9 C 0.04 1.03 5.20 -17.43 -0.09 0.93 16 10 N -0.88 -22.03 8.77 55.51 0.49 -21.55 16 11 Si 0.93 19.42 29.56 -169.99 -5.02 14.39 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 C 0.50 12.09 6.86 -12.18 -0.08 12.01 16 16 O -0.59 -15.46 16.77 5.31 0.09 -15.38 16 17 C 0.02 0.51 4.01 -104.55 -0.42 0.09 16 18 C -0.19 -3.03 9.78 -39.51 -0.39 -3.41 16 19 C 0.11 1.40 10.25 -16.89 -0.17 1.22 16 20 N -0.50 -7.50 2.98 -127.19 -0.38 -7.87 16 21 C 0.06 0.66 10.34 59.85 0.62 1.27 16 22 C 0.52 10.26 7.41 -15.38 -0.11 10.14 16 23 O -0.56 -12.60 16.61 4.90 0.08 -12.52 16 24 C -0.20 -4.29 9.60 -38.51 -0.37 -4.66 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 28 H 0.14 3.17 6.22 -51.93 -0.32 2.85 16 29 H 0.08 1.76 7.56 -51.93 -0.39 1.37 16 30 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 31 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.16 1.20 8.02 -52.49 -0.42 0.78 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.56 8.00 -51.93 -0.42 0.14 16 35 H 0.09 1.09 7.37 -51.92 -0.38 0.71 16 36 H 0.15 3.68 8.06 -52.49 -0.42 3.26 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -34.31 319.87 -4.76 -39.07 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.97 Total: 5.11 kcal Atomic # 6 Polarization: 26.90 SS G_CDS: 0.11 Total: 27.01 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.15 Total: -39.82 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -0.54 Total: -50.58 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.31 -4.76 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120615720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.092 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds