Wall clock time and date at job start Tue Mar 31 2020 04:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00585 * 2 1 4 4 O 1.20824 * 119.99488 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00043 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47042 * 180.02562 * 5 3 2 7 7 C 1.36553 * 119.99773 * 263.45035 * 6 5 3 8 8 H 1.07998 * 119.99580 * 201.88897 * 7 6 5 9 9 C 1.39281 * 120.00132 * 21.87758 * 7 6 5 10 10 N 1.31206 * 120.00086 * 6.31658 * 9 7 6 11 11 Si 1.86794 * 119.99865 * 186.31263 * 9 7 6 12 12 H 1.48505 * 109.47395 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47219 * 120.00620 * 11 9 7 14 14 H 1.48503 * 109.47244 * 240.00260 * 11 9 7 15 15 C 1.34777 * 120.00347 * 83.44100 * 6 5 3 16 16 O 1.21558 * 119.99995 * 4.55469 * 15 6 5 17 17 C 1.48171 * 120.00323 * 184.55129 * 15 6 5 18 18 C 1.41283 * 120.55237 * 255.49423 * 17 15 6 19 19 C 1.35180 * 119.83940 * 180.25449 * 18 17 15 20 20 N 1.35796 * 121.00304 * 359.43313 * 19 18 17 21 21 C 1.46499 * 119.42062 * 180.26721 * 20 19 18 22 22 C 1.34592 * 121.15570 * 0.56956 * 20 19 18 23 23 O 1.22023 * 119.94909 * 179.69332 * 22 20 19 24 24 C 1.38531 * 120.55451 * 75.46493 * 17 15 6 25 25 H 1.08995 * 109.47409 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47344 * 300.00441 * 1 2 3 27 27 H 1.09007 * 109.47139 * 59.99673 * 1 2 3 28 28 H 1.08997 * 109.47427 * 59.99828 * 5 3 2 29 29 H 1.09003 * 109.46924 * 299.99761 * 5 3 2 30 30 H 0.96996 * 120.00215 * 179.97438 * 10 9 7 31 31 H 1.07991 * 120.08177 * 359.97438 * 18 17 15 32 32 H 1.07991 * 119.50273 * 179.72442 * 19 18 17 33 33 H 1.08999 * 109.47529 * 270.29890 * 21 20 19 34 34 H 1.09000 * 109.47288 * 30.30341 * 21 20 19 35 35 H 1.09011 * 109.46861 * 150.29603 * 21 20 19 36 36 H 1.08000 * 120.49449 * 0.02562 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6795 0.0002 7 6 4.3043 3.2967 -1.1745 8 1 4.9300 4.1770 -1.1678 9 6 3.8266 2.7908 -2.3810 10 7 2.9684 1.7984 -2.3825 11 14 4.4078 3.5254 -3.9972 12 1 5.3683 4.6247 -3.7244 13 1 5.0756 2.4747 -4.8067 14 1 3.2420 4.0604 -4.7454 15 6 4.0456 3.3629 1.1601 16 8 3.8391 2.7927 2.2136 17 6 4.3676 4.8091 1.1513 18 6 5.6489 5.2620 1.5379 19 6 5.9254 6.5852 1.5294 20 7 4.9919 7.4924 1.1427 21 6 5.3309 8.9177 1.1411 22 6 3.7589 7.1056 0.7665 23 8 2.9353 7.9401 0.4284 24 6 3.4177 5.7398 0.7632 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.9557 0.7807 -0.8908 29 1 3.9564 0.7804 0.8892 30 1 2.6354 1.4463 -3.2227 31 1 6.4040 4.5532 1.8439 32 1 6.9051 6.9257 1.8303 33 1 5.0938 9.3486 2.1138 34 1 6.3954 9.0378 0.9401 35 1 4.7555 9.4271 0.3679 36 1 2.4302 5.4222 0.4626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120615720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:15 Heat of formation + Delta-G solvation = -120.703611 kcal Electronic energy + Delta-G solvation = -24253.122015 eV Core-core repulsion = 20510.328374 eV Total energy + Delta-G solvation = -3742.793641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31079 -41.37134 -40.20427 -37.93393 -37.36871 -36.64027 -35.39429 -33.57245 -31.04730 -30.46102 -28.77655 -27.85898 -26.73390 -25.01928 -24.14106 -22.19735 -21.27293 -19.59531 -18.60910 -18.43872 -18.23802 -18.06456 -17.29424 -17.10529 -17.01033 -16.79098 -16.23193 -16.07609 -15.31133 -14.97861 -14.92919 -14.33668 -14.17269 -14.10020 -13.95096 -13.44757 -13.30972 -13.14481 -12.96423 -12.78219 -12.75796 -12.67278 -12.46087 -12.09793 -11.66093 -11.60435 -11.45488 -11.03839 -10.92806 -10.55023 -10.00274 -8.97924 -8.44337 -6.07564 -0.28050 0.81268 1.30990 1.42642 1.54600 1.57931 1.70734 1.75248 2.10442 2.28025 2.53527 2.76269 3.04362 3.70971 3.83466 3.95002 4.23501 4.25699 4.29865 4.32816 4.38491 4.49195 4.50187 4.53420 4.68073 4.77398 4.84225 4.91057 5.02151 5.32095 5.38855 5.52678 5.56995 5.65140 6.02732 6.23494 6.92904 6.94385 7.13567 7.29434 7.68378 8.60665 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.006205 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.217497 B = 4511.660775 C = 5373.800096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.372 6.372 3 C 0.488 3.512 4 O -0.546 6.546 5 C 0.150 3.850 6 N -0.420 5.420 7 C -0.341 4.341 8 H 0.108 0.892 9 C 0.001 3.999 10 N -0.898 5.898 11 Si 0.994 3.006 12 H -0.257 1.257 13 H -0.263 1.263 14 H -0.293 1.293 15 C 0.487 3.513 16 O -0.620 6.620 17 C 0.029 3.971 18 C -0.221 4.221 19 C 0.165 3.835 20 N -0.493 5.493 21 C 0.053 3.947 22 C 0.511 3.489 23 O -0.603 6.603 24 C -0.246 4.246 25 H 0.137 0.863 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.139 0.861 29 H 0.093 0.907 30 H 0.275 0.725 31 H 0.170 0.830 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.029 4.453 3.405 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.289 6.289 3 C 0.331 3.669 4 O -0.435 6.435 5 C 0.025 3.975 6 N -0.136 5.136 7 C -0.468 4.468 8 H 0.125 0.875 9 C -0.201 4.201 10 N -0.537 5.537 11 Si 0.817 3.183 12 H -0.180 1.180 13 H -0.188 1.188 14 H -0.220 1.220 15 C 0.277 3.723 16 O -0.508 6.508 17 C 0.022 3.978 18 C -0.244 4.244 19 C 0.038 3.962 20 N -0.202 5.202 21 C -0.086 4.086 22 C 0.315 3.685 23 O -0.492 6.492 24 C -0.269 4.269 25 H 0.155 0.845 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.156 0.844 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.188 0.812 32 H 0.254 0.746 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.091 0.909 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.111 4.900 3.525 10.929 hybrid contribution -1.101 -0.077 -1.054 1.526 sum 8.010 4.823 2.471 9.671 Atomic orbital electron populations 1.23311 0.76191 1.04988 1.01122 1.86418 1.24052 1.33498 1.84906 1.24078 0.92711 0.80774 0.69289 1.90508 1.67533 1.37872 1.47580 1.20717 0.86964 0.85074 1.04715 1.43380 1.55280 1.08656 1.06283 1.19905 1.30682 1.13436 0.82747 0.87464 1.26152 0.94527 0.96543 1.02907 1.69684 1.29002 1.26171 1.28798 0.84846 0.77810 0.78729 0.76879 1.18044 1.18788 1.22014 1.18758 0.82444 0.87215 0.83905 1.90624 1.57805 1.70278 1.32078 1.20414 0.95099 0.92504 0.89795 1.20904 0.95872 0.96646 1.10942 1.22725 0.95260 0.87675 0.90554 1.45478 1.11270 1.11316 1.52105 1.22506 1.04967 0.76336 1.04797 1.16742 0.82440 0.89137 0.80152 1.90856 1.49489 1.54712 1.54107 1.22075 1.01364 0.92064 1.11389 0.84516 0.93207 0.93719 0.84396 0.88873 0.91414 0.81225 0.74589 0.89066 0.84618 0.90926 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.49 16 2 O -0.37 -16.17 10.56 -51.43 -0.54 -16.71 16 3 C 0.49 24.91 6.09 71.23 0.43 25.34 16 4 O -0.55 -31.86 15.84 21.97 0.35 -31.51 16 5 C 0.15 7.30 5.16 85.63 0.44 7.74 16 6 N -0.42 -21.39 2.17 -642.59 -1.40 -22.79 16 7 C -0.34 -17.10 8.94 84.21 0.75 -16.34 16 8 H 0.11 5.15 6.93 -2.91 -0.02 5.13 16 9 C 0.00 0.03 5.20 85.04 0.44 0.48 16 10 N -0.90 -46.25 8.77 21.72 0.19 -46.06 16 11 Si 0.99 39.85 29.56 68.60 2.03 41.88 16 12 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 13 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 14 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 15 C 0.49 24.49 6.86 86.88 0.60 25.09 16 16 O -0.62 -33.72 16.77 -3.90 -0.07 -33.78 16 17 C 0.03 1.24 4.01 -19.82 -0.08 1.16 16 18 C -0.22 -6.45 9.78 22.31 0.22 -6.23 16 19 C 0.16 3.28 10.25 83.37 0.85 4.13 16 20 N -0.49 -13.01 2.98 -674.48 -2.01 -15.02 16 21 C 0.05 0.87 10.34 127.77 1.32 2.19 16 22 C 0.51 20.57 7.41 84.89 0.63 21.20 16 23 O -0.60 -28.16 16.61 -5.39 -0.09 -28.25 16 24 C -0.25 -11.33 9.60 22.96 0.22 -11.11 16 25 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 26 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 27 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.14 6.59 6.22 -2.39 -0.01 6.58 16 29 H 0.09 4.19 7.56 -2.39 -0.02 4.18 16 30 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 31 H 0.17 4.11 8.06 -2.91 -0.02 4.08 16 32 H 0.24 1.25 8.02 -2.91 -0.02 1.23 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.14 0.81 8.00 -2.39 -0.02 0.79 16 35 H 0.07 1.54 7.37 -2.38 -0.02 1.52 16 36 H 0.11 5.72 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -82.82 319.87 6.60 -76.22 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 1.11 Total: 19.88 kcal Atomic # 6 Polarization: 49.11 SS G_CDS: 7.03 Total: 56.14 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -3.22 Total: -83.87 kcal Atomic # 8 Polarization: -109.90 SS G_CDS: -0.35 Total: -110.25 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -82.82 6.60 -76.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120615720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.480 kcal (2) G-P(sol) polarization free energy of solvation -82.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds