Wall clock time and date at job start Tue Mar 31 2020 03:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86794 * 119.99692 * 2 1 4 4 H 1.48500 * 109.47447 * 269.99962 * 3 2 1 5 5 H 1.48494 * 109.47648 * 30.00206 * 3 2 1 6 6 H 1.48505 * 109.47124 * 150.00605 * 3 2 1 7 7 C 1.38946 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99661 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99423 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00855 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99524 * 180.02562 * 10 9 7 13 13 H 1.09002 * 110.32622 * 40.70129 * 12 10 9 14 14 C 1.54908 * 110.36804 * 278.46509 * 12 10 9 15 15 C 1.55154 * 101.58289 * 204.04374 * 14 12 10 16 16 C 1.54325 * 102.94303 * 35.49976 * 15 14 12 17 17 N 1.47290 * 107.30599 * 337.81911 * 16 15 14 18 18 C 1.34774 * 125.79121 * 178.92556 * 17 16 15 19 19 O 1.21708 * 119.99778 * 180.02562 * 18 17 16 20 20 C 1.46581 * 120.00055 * 359.97438 * 18 17 16 21 21 C 1.36649 * 125.45379 * 179.72276 * 20 18 17 22 22 C 1.37476 * 113.29492 * 179.80402 * 21 20 18 23 23 C 1.33815 * 115.09986 * 0.48965 * 22 21 20 24 24 S 1.70624 * 110.95632 * 359.73049 * 23 22 21 25 25 H 0.97001 * 120.00105 * 359.97438 * 1 2 3 26 26 H 0.96992 * 119.99826 * 0.02562 * 9 7 2 27 27 H 1.09008 * 111.00494 * 322.11796 * 14 12 10 28 28 H 1.09000 * 111.00857 * 85.92860 * 14 12 10 29 29 H 1.09002 * 110.72290 * 153.86663 * 15 14 12 30 30 H 1.08997 * 110.72022 * 277.13434 * 15 14 12 31 31 H 1.09004 * 109.88239 * 97.22707 * 16 15 14 32 32 H 1.08999 * 109.88411 * 218.39137 * 16 15 14 33 33 H 1.08001 * 123.35853 * 359.97438 * 21 20 18 34 34 H 1.07994 * 122.45437 * 180.24030 * 22 21 20 35 35 H 1.08001 * 124.52819 * 179.75146 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 1 0.3836 -4.8032 -0.6680 14 6 0.7885 -5.2233 1.4350 15 6 0.6385 -6.7644 1.3368 16 6 1.7823 -7.1628 0.3805 17 7 2.1316 -5.9678 -0.4066 18 6 3.1001 -5.8948 -1.3410 19 8 3.2998 -4.8486 -1.9300 20 6 3.9137 -7.0750 -1.6471 21 6 4.9170 -7.1276 -2.5734 22 6 5.5192 -8.3609 -2.6531 23 6 5.0209 -9.2902 -1.8293 24 16 3.7499 -8.6519 -0.8867 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 1.5496 -4.9506 2.1662 28 1 -0.1651 -4.7517 1.6726 29 1 0.7736 -7.2281 2.3140 30 1 -0.3294 -7.0314 0.9127 31 1 2.6476 -7.4937 0.9549 32 1 1.4492 -7.9598 -0.2842 33 1 5.2097 -6.2836 -3.1803 34 1 6.3321 -8.5659 -3.3338 35 1 5.3760 -10.3084 -1.7687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162039923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:53 Heat of formation + Delta-G solvation = -24.646965 kcal Electronic energy + Delta-G solvation = -21399.745534 eV Core-core repulsion = 18103.870094 eV Total energy + Delta-G solvation = -3295.875441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -40.04877 -38.15159 -37.12788 -36.48948 -33.77837 -31.76268 -31.05185 -29.87841 -28.85967 -25.30427 -24.90947 -23.18644 -21.46621 -21.09281 -19.05255 -18.90260 -18.03273 -17.30282 -16.72449 -15.76559 -15.69926 -14.93810 -14.65309 -14.27489 -14.09299 -13.64106 -13.58554 -13.14598 -12.94662 -12.81522 -12.70665 -12.39035 -12.21022 -11.85376 -11.50145 -11.45583 -11.29585 -10.97419 -10.71665 -10.66658 -10.31914 -10.12529 -9.57326 -9.28496 -8.84751 -8.70073 -8.49519 -7.97954 -7.82043 -6.31863 -3.71086 0.60696 1.51008 1.91736 2.49804 3.10779 3.25605 3.32794 3.39421 3.63947 3.99166 4.25718 4.51970 4.64826 4.88883 4.92091 5.01021 5.11796 5.29481 5.33760 5.43194 5.49956 5.50750 5.65259 5.76080 5.95036 5.98248 6.00694 6.15443 6.28908 6.34802 6.35542 6.64432 7.65393 7.81540 8.15581 8.59360 8.75449 9.29367 9.64277 10.17618 10.86321 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.024316 B = 0.004410 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.212393 B = 6347.492728 C = 7276.130104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.290 4.290 8 H 0.101 0.899 9 N -0.563 5.563 10 C 0.446 3.554 11 O -0.563 6.563 12 C 0.127 3.873 13 H 0.085 0.915 14 C -0.120 4.120 15 C -0.124 4.124 16 C 0.090 3.910 17 N -0.603 5.603 18 C 0.598 3.402 19 O -0.481 6.481 20 C -0.239 4.239 21 C -0.068 4.068 22 C -0.145 4.145 23 C -0.258 4.258 24 S 0.200 5.800 25 H 0.270 0.730 26 H 0.391 0.609 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.144 -20.234 0.771 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.420 4.420 8 H 0.119 0.881 9 N -0.200 5.200 10 C 0.231 3.769 11 O -0.445 6.445 12 C 0.020 3.980 13 H 0.103 0.897 14 C -0.159 4.159 15 C -0.162 4.162 16 C -0.035 4.035 17 N -0.339 5.339 18 C 0.385 3.615 19 O -0.355 6.355 20 C -0.360 4.360 21 C -0.101 4.101 22 C -0.177 4.177 23 C -0.395 4.395 24 S 0.467 5.533 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.117 -20.104 1.475 20.189 hybrid contribution 0.908 1.222 -1.187 1.930 sum 2.025 -18.882 0.288 18.992 Atomic orbital electron populations 1.69613 1.05848 1.27926 1.51344 1.25209 0.95620 0.99525 0.97657 0.85877 0.79189 0.80969 0.78365 1.20478 1.21007 1.19523 1.19677 0.93298 0.82166 1.46867 0.88100 1.41734 1.08940 1.04351 1.65002 1.19595 0.88388 0.84412 0.84552 1.90558 1.13510 1.86576 1.53879 1.21747 0.92218 0.87919 0.96152 0.89696 1.22756 1.02828 0.94895 0.95413 1.22593 0.97827 0.96471 0.99335 1.22141 0.98639 0.88218 0.94453 1.47978 1.35455 1.11458 1.39001 1.16407 0.78883 0.86342 0.79869 1.90950 1.66416 1.28457 1.49628 1.24774 1.06360 0.98070 1.06750 1.20803 0.93709 0.98469 0.97096 1.20004 1.02984 0.92507 1.02167 1.25526 1.04919 1.04831 1.04197 1.83183 1.30723 1.01650 1.37766 0.92041 0.77629 0.89939 0.88996 0.89683 0.90137 0.91061 0.90987 0.82951 0.84216 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.30 13.05 55.50 0.72 -24.57 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.29 -8.49 9.68 -14.93 -0.14 -8.64 16 8 H 0.10 3.14 7.16 -52.49 -0.38 2.76 16 9 N -0.56 -14.96 5.29 -10.96 -0.06 -15.02 16 10 C 0.45 11.24 6.15 -10.98 -0.07 11.17 16 11 O -0.56 -16.48 13.46 -18.35 -0.25 -16.73 16 12 C 0.13 2.37 3.56 -67.57 -0.24 2.13 16 13 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 14 C -0.12 -1.70 6.49 -24.58 -0.16 -1.86 16 15 C -0.12 -1.26 6.95 -24.90 -0.17 -1.43 16 16 C 0.09 1.09 5.18 -2.92 -0.02 1.08 16 17 N -0.60 -10.69 3.15 -165.69 -0.52 -11.21 16 18 C 0.60 12.17 7.07 -12.90 -0.09 12.08 16 19 O -0.48 -12.26 14.27 -18.71 -0.27 -12.53 16 20 C -0.24 -3.83 6.38 -36.79 -0.23 -4.07 16 21 C -0.07 -1.00 10.01 -40.43 -0.40 -1.40 16 22 C -0.15 -1.66 10.15 -41.41 -0.42 -2.08 16 23 C -0.26 -2.61 10.92 29.18 0.32 -2.29 16 24 S 0.20 2.21 18.45 -107.50 -1.98 0.23 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 27 H 0.08 1.29 8.05 -51.92 -0.42 0.87 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.82 6.84 -51.93 -0.36 0.47 16 32 H 0.07 0.73 7.00 -51.93 -0.36 0.37 16 33 H 0.15 2.29 8.06 -52.49 -0.42 1.86 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -36.50 308.57 -8.38 -44.88 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -3.93 Total: 8.19 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.73 Total: 5.16 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.14 Total: -50.80 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.51 Total: -29.26 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.98 Total: 0.23 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.50 -8.38 -44.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162039923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.237 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds