Wall clock time and date at job start Tue Mar 31 2020 03:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86794 * 119.99692 * 2 1 4 4 H 1.48500 * 109.47447 * 269.99962 * 3 2 1 5 5 H 1.48494 * 109.47648 * 30.00206 * 3 2 1 6 6 H 1.48505 * 109.47124 * 150.00605 * 3 2 1 7 7 C 1.38946 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99661 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99423 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00855 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99524 * 180.02562 * 10 9 7 13 13 H 1.09002 * 110.32622 * 40.70129 * 12 10 9 14 14 C 1.54908 * 110.36804 * 278.46509 * 12 10 9 15 15 C 1.55154 * 101.58289 * 204.04374 * 14 12 10 16 16 C 1.54325 * 102.94303 * 35.49976 * 15 14 12 17 17 N 1.47290 * 107.30599 * 337.81911 * 16 15 14 18 18 C 1.34774 * 125.79121 * 178.92556 * 17 16 15 19 19 O 1.21708 * 119.99778 * 180.02562 * 18 17 16 20 20 C 1.46581 * 120.00055 * 359.97438 * 18 17 16 21 21 C 1.36649 * 125.45379 * 179.72276 * 20 18 17 22 22 C 1.37476 * 113.29492 * 179.80402 * 21 20 18 23 23 C 1.33815 * 115.09986 * 0.48965 * 22 21 20 24 24 S 1.70624 * 110.95632 * 359.73049 * 23 22 21 25 25 H 0.97001 * 120.00105 * 359.97438 * 1 2 3 26 26 H 0.96992 * 119.99826 * 0.02562 * 9 7 2 27 27 H 1.09008 * 111.00494 * 322.11796 * 14 12 10 28 28 H 1.09000 * 111.00857 * 85.92860 * 14 12 10 29 29 H 1.09002 * 110.72290 * 153.86663 * 15 14 12 30 30 H 1.08997 * 110.72022 * 277.13434 * 15 14 12 31 31 H 1.09004 * 109.88239 * 97.22707 * 16 15 14 32 32 H 1.08999 * 109.88411 * 218.39137 * 16 15 14 33 33 H 1.08001 * 123.35853 * 359.97438 * 21 20 18 34 34 H 1.07994 * 122.45437 * 180.24030 * 22 21 20 35 35 H 1.08001 * 124.52819 * 179.75146 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 1 0.3836 -4.8032 -0.6680 14 6 0.7885 -5.2233 1.4350 15 6 0.6385 -6.7644 1.3368 16 6 1.7823 -7.1628 0.3805 17 7 2.1316 -5.9678 -0.4066 18 6 3.1001 -5.8948 -1.3410 19 8 3.2998 -4.8486 -1.9300 20 6 3.9137 -7.0750 -1.6471 21 6 4.9170 -7.1276 -2.5734 22 6 5.5192 -8.3609 -2.6531 23 6 5.0209 -9.2902 -1.8293 24 16 3.7499 -8.6519 -0.8867 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 1.5496 -4.9506 2.1662 28 1 -0.1651 -4.7517 1.6726 29 1 0.7736 -7.2281 2.3140 30 1 -0.3294 -7.0314 0.9127 31 1 2.6476 -7.4937 0.9549 32 1 1.4492 -7.9598 -0.2842 33 1 5.2097 -6.2836 -3.1803 34 1 6.3321 -8.5659 -3.3338 35 1 5.3760 -10.3084 -1.7687 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162039923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:52 Heat of formation + Delta-G solvation = -50.832098 kcal Electronic energy + Delta-G solvation = -21400.881007 eV Core-core repulsion = 18103.870094 eV Total energy + Delta-G solvation = -3297.010913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.52525 -39.64943 -38.60367 -37.83326 -35.92942 -33.41292 -32.82422 -31.05924 -30.06990 -27.01962 -26.32517 -24.43963 -22.69762 -22.38289 -20.71125 -19.95776 -19.93471 -18.89845 -18.17615 -17.17000 -16.76966 -16.71015 -16.04874 -15.95299 -15.61782 -15.38838 -15.06963 -14.39961 -14.27096 -14.11783 -13.81037 -13.63829 -13.49366 -13.25915 -13.19749 -12.98244 -12.60676 -12.49879 -12.44928 -12.14462 -11.71864 -11.57801 -11.53012 -11.00249 -10.42060 -10.01932 -9.89583 -9.61846 -9.39398 -8.47517 -5.95450 -0.44645 0.51915 1.00201 1.34340 1.36797 1.46100 1.50365 1.79618 2.08861 2.28076 2.30700 3.09152 3.18955 3.53668 3.60649 3.84849 4.06262 4.14544 4.16700 4.34061 4.36386 4.46073 4.56043 4.65196 4.84456 4.88377 5.02952 5.09992 5.19190 5.26540 5.33234 5.37650 5.39456 5.98000 6.46234 6.59824 7.10377 7.21965 7.54653 8.13964 8.70284 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.024316 B = 0.004410 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.212393 B = 6347.492728 C = 7276.130104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.262 1.262 6 H -0.276 1.276 7 C -0.331 4.331 8 H 0.068 0.932 9 N -0.572 5.572 10 C 0.440 3.560 11 O -0.611 6.611 12 C 0.124 3.876 13 H 0.097 0.903 14 C -0.116 4.116 15 C -0.106 4.106 16 C 0.077 3.923 17 N -0.606 5.606 18 C 0.585 3.415 19 O -0.561 6.561 20 C -0.298 4.298 21 C -0.075 4.075 22 C -0.160 4.160 23 C -0.236 4.236 24 S 0.276 5.724 25 H 0.278 0.722 26 H 0.396 0.604 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.165 0.835 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 -23.514 2.018 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.187 1.187 6 H -0.201 1.201 7 C -0.460 4.460 8 H 0.086 0.914 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.496 6.496 12 C 0.017 3.983 13 H 0.115 0.885 14 C -0.154 4.154 15 C -0.143 4.143 16 C -0.045 4.045 17 N -0.341 5.341 18 C 0.375 3.625 19 O -0.440 6.440 20 C -0.418 4.418 21 C -0.110 4.110 22 C -0.190 4.190 23 C -0.373 4.373 24 S 0.544 5.456 25 H 0.088 0.912 26 H 0.230 0.770 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.183 0.817 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.095 -23.444 2.767 23.607 hybrid contribution 1.232 2.117 -1.576 2.913 sum 1.327 -21.326 1.191 21.401 Atomic orbital electron populations 1.69661 1.06590 1.29235 1.50550 1.25972 0.96619 1.02086 0.96362 0.84971 0.77920 0.77119 0.78529 1.20046 1.18652 1.20087 1.19546 0.92273 0.84253 1.49947 0.91433 1.41772 1.09026 1.04416 1.65774 1.20785 0.88284 0.86188 0.82092 1.90515 1.16026 1.87692 1.55331 1.21828 0.91702 0.84987 0.99810 0.88543 1.22780 1.02799 0.98628 0.91221 1.22675 0.98277 0.92569 1.00778 1.22603 1.00090 0.86779 0.95012 1.48206 1.34484 1.12820 1.38551 1.17166 0.79198 0.86834 0.79342 1.90882 1.68854 1.31668 1.52583 1.24582 1.07542 0.99876 1.09750 1.20947 0.93916 0.99487 0.96644 1.20118 1.04012 0.91189 1.03646 1.26099 1.03217 1.06160 1.01835 1.82686 1.30099 0.96944 1.35918 0.91227 0.77041 0.91952 0.87079 0.86188 0.87239 0.90142 0.88156 0.85366 0.81724 0.77795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 13.05 21.66 0.28 -51.54 16 2 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 3 Si 0.99 45.91 29.55 68.60 2.03 47.94 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.33 -20.47 9.68 84.04 0.81 -19.65 16 8 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 9 N -0.57 -32.17 5.29 -306.98 -1.62 -33.79 16 10 C 0.44 23.57 6.15 87.66 0.54 24.11 16 11 O -0.61 -38.63 13.46 19.78 0.27 -38.36 16 12 C 0.12 4.74 3.56 44.72 0.16 4.90 16 13 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 14 C -0.12 -3.11 6.49 31.98 0.21 -2.90 16 15 C -0.11 -1.69 6.95 31.78 0.22 -1.47 16 16 C 0.08 1.66 5.18 86.68 0.45 2.11 16 17 N -0.61 -21.74 3.15 -796.34 -2.51 -24.25 16 18 C 0.58 25.22 7.07 86.42 0.61 25.83 16 19 O -0.56 -31.36 14.27 18.48 0.26 -31.09 16 20 C -0.30 -9.73 6.38 24.08 0.15 -9.58 16 21 C -0.08 -2.30 10.01 21.72 0.22 -2.08 16 22 C -0.16 -3.34 10.15 21.08 0.21 -3.13 16 23 C -0.24 -3.80 10.92 66.81 0.73 -3.07 16 24 S 0.28 5.21 18.45 -56.49 -1.04 4.17 16 25 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 26 H 0.40 20.78 7.90 -92.71 -0.73 20.04 16 27 H 0.06 1.93 8.05 -2.38 -0.02 1.91 16 28 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.60 6.84 -2.38 -0.02 1.58 16 32 H 0.10 1.62 7.00 -2.39 -0.02 1.60 16 33 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -89.12 308.57 2.85 -86.28 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.40 Total: 25.73 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 4.78 Total: 14.92 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -3.85 Total: -109.58 kcal Atomic # 8 Polarization: -69.98 SS G_CDS: 0.53 Total: -69.45 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.04 Total: 4.17 kcal Total: -89.12 2.85 -86.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162039923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.443 kcal (2) G-P(sol) polarization free energy of solvation -89.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds