Wall clock time and date at job start Tue Mar 31 2020 03:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00116 * 2 1 4 4 H 1.48507 * 109.46991 * 239.99334 * 3 2 1 5 5 H 1.48498 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47240 * 119.99771 * 3 2 1 7 7 C 1.37879 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47475 * 179.97438 * 9 7 2 11 11 O 1.21303 * 119.99489 * 0.02562 * 10 9 7 12 12 C 1.46793 * 120.00289 * 180.27639 * 10 9 7 13 13 C 1.40208 * 120.22026 * 359.45426 * 12 10 9 14 14 F 1.35099 * 120.11146 * 359.97438 * 13 12 10 15 15 C 1.38154 * 119.77546 * 179.72122 * 13 12 10 16 16 C 1.38345 * 120.21827 * 0.54948 * 15 13 12 17 17 C 1.50702 * 119.77430 * 179.69857 * 16 15 13 18 18 F 1.39902 * 109.46915 * 270.02406 * 17 16 15 19 19 F 1.39897 * 109.47208 * 30.02379 * 17 16 15 20 20 F 1.39900 * 109.47018 * 150.02477 * 17 16 15 21 21 C 1.38348 * 120.45174 * 359.72527 * 16 15 13 22 22 C 1.38153 * 120.21973 * 359.97438 * 21 16 15 23 23 F 1.35096 * 120.11433 * 180.02562 * 22 21 16 24 24 H 0.97010 * 119.99929 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 26 26 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 27 27 H 1.07992 * 119.89284 * 180.27493 * 15 13 12 28 28 H 1.07999 * 119.89046 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2301 -3.6447 0.0005 11 8 3.4227 -3.4230 0.0010 12 6 1.7408 -5.0286 -0.0056 13 6 0.3633 -5.2901 0.0001 14 9 -0.5205 -4.2684 0.0117 15 6 -0.0871 -6.5961 -0.0116 16 6 0.8160 -7.6441 -0.0174 17 6 0.3136 -9.0649 -0.0232 18 9 0.1591 -9.5103 1.2940 19 9 -0.9193 -9.1209 -0.6821 20 9 1.2346 -9.8824 -0.6870 21 6 2.1772 -7.3967 -0.0173 22 6 2.6479 -6.0978 -0.0119 23 9 3.9775 -5.8587 -0.0123 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8898 26 1 0.6239 -2.5567 0.8902 27 1 -1.1477 -6.7996 -0.0118 28 1 2.8741 -8.2217 -0.0214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169801619.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:46 Heat of formation + Delta-G solvation = -265.767543 kcal Electronic energy + Delta-G solvation = -23133.358614 eV Core-core repulsion = 18563.204427 eV Total energy + Delta-G solvation = -4570.154186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.042 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.27078 -50.32750 -50.27786 -48.76561 -48.71964 -40.84023 -39.54561 -35.17407 -33.61315 -31.89832 -31.17921 -28.20385 -25.89770 -24.27587 -23.78511 -21.40117 -20.12294 -19.70471 -19.58569 -18.83047 -18.14485 -17.84022 -17.55137 -17.47153 -16.96501 -16.67806 -16.57549 -15.86895 -15.60474 -15.54955 -15.48581 -15.45354 -15.13449 -14.87782 -14.84601 -14.68370 -14.22343 -13.89773 -13.56249 -13.23264 -13.19623 -13.04369 -12.85938 -12.61036 -12.10940 -11.44806 -10.67191 -10.63465 -10.62117 -10.15052 -8.27482 -6.37764 -1.16111 -0.41750 1.04185 1.31363 1.38337 1.40782 1.49509 1.96281 2.31040 2.37059 2.61698 2.63089 2.86109 3.06654 3.17019 3.25312 3.33817 3.56314 3.83448 4.17071 4.34117 4.50255 4.58224 4.65995 5.07446 5.18191 5.19870 5.65609 6.02013 6.53774 6.74285 7.31302 8.83724 Molecular weight = 294.04amu Principal moments of inertia in cm(-1) A = 0.030531 B = 0.004114 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.872646 B = 6805.143357 C = 7542.174155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.553 4.553 8 H 0.057 0.943 9 C -0.013 4.013 10 C 0.388 3.612 11 O -0.470 6.470 12 C -0.225 4.225 13 C 0.175 3.825 14 F -0.110 7.110 15 C -0.112 4.112 16 C -0.099 4.099 17 C 0.527 3.473 18 F -0.168 7.168 19 F -0.167 7.167 20 F -0.167 7.167 21 C -0.112 4.112 22 C 0.170 3.830 23 F -0.115 7.115 24 H 0.268 0.732 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.191 0.809 28 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -20.988 -0.055 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.591 4.591 8 H 0.075 0.925 9 C -0.050 4.050 10 C 0.267 3.733 11 O -0.346 6.346 12 C -0.228 4.228 13 C 0.155 3.845 14 F -0.088 7.088 15 C -0.130 4.130 16 C -0.101 4.101 17 C 0.473 3.527 18 F -0.149 7.149 19 F -0.148 7.148 20 F -0.148 7.148 21 C -0.131 4.131 22 C 0.150 3.850 23 F -0.093 7.093 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.208 0.792 28 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.864 -20.741 -0.055 20.825 hybrid contribution 0.323 1.249 0.005 1.290 sum -1.541 -19.492 -0.050 19.553 Atomic orbital electron populations 1.70039 1.07183 1.28255 1.50387 1.25793 0.95838 1.02769 0.94187 0.85530 0.78420 0.78300 0.78983 1.19653 1.19817 1.19644 1.21413 0.93748 0.91600 1.52329 0.92493 1.19559 0.94643 0.91460 0.99296 1.23095 0.90528 0.89373 0.70345 1.90436 1.19725 1.87579 1.36875 1.21218 0.94268 0.96385 1.10913 1.17444 0.84558 0.85343 0.97165 1.91690 1.66828 1.57866 1.92444 1.21096 1.03391 0.88165 1.00366 1.19750 0.93867 0.92629 1.03854 1.17666 0.75579 0.85189 0.74283 1.93279 1.95464 1.90469 1.35712 1.93246 1.43845 1.96716 1.81001 1.93242 1.66097 1.74708 1.80781 1.21050 0.95770 0.95572 1.00677 1.17482 0.77477 0.92360 0.97683 1.91608 1.29801 1.95256 1.92648 0.92263 0.93103 0.93070 0.79170 0.79204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.05 13.29 21.45 0.28 -53.76 15 2 C 0.01 0.78 5.46 84.66 0.46 1.24 15 3 Si 0.96 45.11 29.54 68.60 2.03 47.14 15 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 15 5 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 7 C -0.55 -32.63 8.92 25.60 0.23 -32.41 15 8 H 0.06 3.47 6.75 -2.92 -0.02 3.45 15 9 C -0.01 -0.68 3.65 29.10 0.11 -0.57 15 10 C 0.39 17.81 7.10 27.92 0.20 18.00 15 11 O -0.47 -24.02 14.45 -3.10 -0.04 -24.06 15 12 C -0.22 -7.72 5.88 -20.08 -0.12 -7.84 15 13 C 0.18 5.04 7.26 22.73 0.17 5.21 15 14 F -0.11 -3.79 13.76 44.97 0.62 -3.17 15 15 C -0.11 -2.18 9.35 22.28 0.21 -1.98 15 16 C -0.10 -1.73 5.46 -19.81 -0.11 -1.84 15 17 C 0.53 7.77 3.36 71.24 0.24 8.01 15 18 F -0.17 -2.62 17.30 44.97 0.78 -1.84 15 19 F -0.17 -2.49 16.44 44.97 0.74 -1.75 15 20 F -0.17 -2.44 16.44 44.97 0.74 -1.70 15 21 C -0.11 -2.15 9.35 22.28 0.21 -1.94 15 22 C 0.17 4.86 7.29 22.73 0.17 5.02 15 23 F -0.12 -3.80 15.55 44.97 0.70 -3.10 15 24 H 0.27 14.78 8.31 -92.70 -0.77 14.01 15 25 H 0.05 2.72 7.43 -2.38 -0.02 2.70 15 26 H 0.05 2.74 7.39 -2.39 -0.02 2.72 15 27 H 0.19 2.58 7.58 -2.91 -0.02 2.56 15 28 H 0.19 2.42 7.58 -2.91 -0.02 2.40 15 Total: -1.00 -67.24 276.23 8.85 -58.40 By element: Atomic # 1 Polarization: -8.33 SS G_CDS: 1.25 Total: -7.08 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 1.76 Total: -9.08 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.28 Total: -53.76 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.04 Total: -24.06 kcal Atomic # 9 Polarization: -15.13 SS G_CDS: 3.58 Total: -11.55 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.24 8.85 -58.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169801619.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.371 kcal (2) G-P(sol) polarization free energy of solvation -67.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds