Wall clock time and date at job start Tue Mar 31 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34226 * 116.99834 * 2 1 4 4 O 1.20828 * 120.00290 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99637 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47363 * 180.02562 * 5 3 2 7 7 C 1.36879 * 119.99619 * 264.77254 * 6 5 3 8 8 H 1.08004 * 119.99695 * 127.79940 * 7 6 5 9 9 C 1.39007 * 119.99981 * 307.79118 * 7 6 5 10 10 N 1.31393 * 120.00068 * 4.04120 * 9 7 6 11 11 Si 1.86803 * 119.99966 * 184.03919 * 9 7 6 12 12 H 1.48504 * 109.47211 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46950 * 119.99876 * 11 9 7 14 14 H 1.48498 * 109.46953 * 240.00077 * 11 9 7 15 15 C 1.34779 * 119.99945 * 84.76267 * 6 5 3 16 16 O 1.21732 * 119.99831 * 4.04341 * 15 6 5 17 17 C 1.46579 * 119.99798 * 184.03577 * 15 6 5 18 18 C 1.35059 * 125.06687 * 173.02902 * 17 15 6 19 19 C 1.38896 * 113.62351 * 180.02562 * 18 17 15 20 20 C 1.43195 * 122.94872 * 179.97438 * 19 18 17 21 21 N 8.86738 * 134.14371 * 216.23039 * 3 1 2 22 22 C 1.36652 * 114.09785 * 359.97438 * 19 18 17 23 23 S 1.70586 * 110.56018 * 359.72673 * 22 19 18 24 24 H 1.09002 * 109.46676 * 299.99832 * 1 2 3 25 25 H 1.08997 * 109.46940 * 59.99526 * 1 2 3 26 26 H 1.08994 * 109.47157 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47392 * 59.99797 * 5 3 2 28 28 H 1.09009 * 109.47039 * 299.99983 * 5 3 2 29 29 H 0.96997 * 120.00129 * 180.02562 * 10 9 7 30 30 H 1.07997 * 123.18933 * 0.03634 * 18 17 15 31 31 H 1.08002 * 124.71778 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9819 2.6796 0.0002 7 6 4.2790 3.3060 -1.1801 8 1 3.8063 4.2452 -1.4269 9 6 5.1893 2.7334 -2.0609 10 7 5.7044 1.5535 -1.7983 11 14 5.6802 3.6413 -3.6179 12 1 4.9646 4.9410 -3.6795 13 1 7.1453 3.8835 -3.6085 14 1 5.3215 2.8214 -4.8029 15 6 4.0713 3.3553 1.1629 16 8 3.8786 2.7794 2.2179 17 6 4.4008 4.7836 1.1571 18 6 4.3864 5.5877 2.2421 19 6 4.7389 6.9024 1.9653 20 6 4.7887 7.9230 2.9684 21 7 4.8275 8.7349 3.7609 22 6 5.0341 7.1361 0.6517 23 16 4.8810 5.7031 -0.2609 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.9558 0.7809 -0.8907 28 1 3.9565 0.7805 0.8892 29 1 6.3398 1.1540 -2.4127 30 1 4.1256 5.2413 3.2312 31 1 5.3276 8.0940 0.2483 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177083591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:50 Heat of formation + Delta-G solvation = -67.974418 kcal Electronic energy + Delta-G solvation = -20860.850059 eV Core-core repulsion = 17427.262704 eV Total energy + Delta-G solvation = -3433.587355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.051 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56484 -40.41200 -39.10211 -37.48764 -36.92597 -36.59891 -33.69501 -31.59502 -29.92926 -27.96506 -27.10289 -26.00742 -23.68196 -21.85947 -21.02896 -19.73564 -18.79022 -18.60533 -17.88354 -17.41113 -17.24954 -16.93673 -16.54675 -16.01448 -15.68541 -15.01034 -14.94373 -14.44927 -14.40911 -14.30765 -14.25421 -13.62634 -13.42745 -13.24248 -13.17047 -13.06321 -13.00172 -12.88689 -12.61837 -11.94677 -11.75624 -11.72310 -11.47384 -11.00452 -10.74053 -9.87524 -9.50279 -9.32130 -8.45752 -6.46233 -0.34182 0.70353 0.74594 1.16993 1.28351 1.50245 1.53979 1.67236 1.68686 1.71518 2.22391 2.38323 2.60940 2.75561 2.99110 3.21500 4.03394 4.08080 4.23464 4.32335 4.34119 4.47121 4.54156 4.67495 4.85249 4.92140 5.19040 5.21111 5.32149 5.37662 5.82259 6.18294 6.46640 6.83337 6.90266 7.27293 7.74803 8.57400 Molecular weight = 294.05amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.006782 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.496863 B = 4127.888030 C = 5692.508368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.449 3.551 4 O -0.534 6.534 5 C 0.126 3.874 6 N -0.432 5.432 7 C -0.367 4.367 8 H 0.109 0.891 9 C 0.037 3.963 10 N -0.872 5.872 11 Si 0.955 3.045 12 H -0.232 1.232 13 H -0.263 1.263 14 H -0.274 1.274 15 C 0.548 3.452 16 O -0.618 6.618 17 C -0.267 4.267 18 C -0.050 4.050 19 C -0.084 4.084 20 C 0.304 3.696 21 N -0.471 5.471 22 C -0.234 4.234 23 S 0.387 5.613 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.137 0.863 27 H 0.146 0.854 28 H 0.095 0.905 29 H 0.287 0.713 30 H 0.141 0.859 31 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 1.436 -5.588 5.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.292 3.708 4 O -0.424 6.424 5 C 0.001 3.999 6 N -0.150 5.150 7 C -0.500 4.500 8 H 0.125 0.875 9 C -0.173 4.173 10 N -0.505 5.505 11 Si 0.775 3.225 12 H -0.154 1.154 13 H -0.187 1.187 14 H -0.199 1.199 15 C 0.339 3.661 16 O -0.506 6.506 17 C -0.388 4.388 18 C -0.084 4.084 19 C -0.101 4.101 20 C -0.011 4.011 21 N -0.148 5.148 22 C -0.376 4.376 23 S 0.661 5.339 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.155 0.845 27 H 0.163 0.837 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.539 2.218 -5.453 6.085 hybrid contribution -0.376 -0.010 0.937 1.010 sum -1.915 2.208 -4.517 5.380 Atomic orbital electron populations 1.23513 0.75256 1.05631 1.02074 1.86514 1.24862 1.32826 1.84097 1.25126 0.93459 0.81331 0.70861 1.90559 1.67626 1.37477 1.46700 1.21083 0.84745 0.87284 1.06788 1.42949 1.57454 1.09049 1.05593 1.19667 1.25580 1.07375 0.97329 0.87466 1.26430 0.93070 0.95919 1.01856 1.69712 1.27013 1.15479 1.38300 0.85403 0.79702 0.80550 0.76871 1.15382 1.18720 1.19905 1.17777 0.78580 0.86139 0.83618 1.90645 1.57261 1.70377 1.32343 1.23923 1.16523 0.98098 1.00225 1.20078 0.98133 0.90906 0.99259 1.14874 1.15108 0.89613 0.90495 1.25248 0.91740 0.92050 0.92086 1.81159 1.11783 1.11412 1.10413 1.27682 1.01326 1.10654 0.97914 1.84392 1.54277 0.90785 1.04412 0.92762 0.92136 0.84480 0.83724 0.88660 0.90279 0.84102 0.77963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.95 16 2 O -0.37 -13.20 10.57 -51.38 -0.54 -13.74 16 3 C 0.45 19.43 7.99 71.24 0.57 20.00 16 4 O -0.53 -25.64 16.06 21.96 0.35 -25.29 16 5 C 0.13 5.66 5.46 85.63 0.47 6.13 16 6 N -0.43 -20.34 2.01 -644.21 -1.29 -21.63 16 7 C -0.37 -15.98 6.67 84.09 0.56 -15.42 16 8 H 0.11 4.43 5.51 -14.94 -0.08 4.34 16 9 C 0.04 1.52 5.34 84.94 0.45 1.97 16 10 N -0.87 -38.62 11.27 21.67 0.24 -38.37 16 11 Si 0.95 31.18 29.56 68.60 2.03 33.21 16 12 H -0.23 -6.72 7.11 99.48 0.71 -6.01 16 13 H -0.26 -8.36 7.11 99.48 0.71 -7.65 16 14 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 15 C 0.55 26.37 7.42 86.42 0.64 27.01 16 16 O -0.62 -32.82 16.45 -4.45 -0.07 -32.89 16 17 C -0.27 -10.70 6.23 23.72 0.15 -10.55 16 18 C -0.05 -1.81 9.73 21.70 0.21 -1.60 16 19 C -0.08 -2.55 5.67 -22.25 -0.13 -2.67 16 20 C 0.30 9.50 15.55 88.34 1.37 10.88 16 21 N -0.47 -16.00 18.53 18.99 0.35 -15.65 16 22 C -0.23 -5.94 10.82 67.45 0.73 -5.22 16 23 S 0.39 12.00 18.32 -56.49 -1.03 10.97 16 24 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 25 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 26 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.15 6.48 5.85 -2.39 -0.01 6.47 16 28 H 0.10 4.31 7.53 -2.38 -0.02 4.29 16 29 H 0.29 11.76 8.31 -92.71 -0.77 10.99 16 30 H 0.14 5.17 8.04 -2.91 -0.02 5.15 16 31 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -60.17 303.22 7.39 -52.79 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.13 Total: 18.13 kcal Atomic # 6 Polarization: 26.25 SS G_CDS: 6.22 Total: 32.47 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -0.70 Total: -75.65 kcal Atomic # 8 Polarization: -71.66 SS G_CDS: -0.26 Total: -71.92 kcal Atomic # 14 Polarization: 31.18 SS G_CDS: 2.03 Total: 33.21 kcal Atomic # 16 Polarization: 12.00 SS G_CDS: -1.03 Total: 10.97 kcal Total: -60.17 7.39 -52.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177083591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.189 kcal (2) G-P(sol) polarization free energy of solvation -60.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds