Wall clock time and date at job start Tue Mar 31 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47300 * 2 1 4 4 C 1.53000 * 109.46779 * 239.99938 * 2 1 3 5 5 N 1.46497 * 109.47162 * 120.00318 * 2 1 3 6 6 C 1.35312 * 125.87163 * 74.99319 * 5 2 1 7 7 C 1.35346 * 106.17710 * 179.97438 * 6 5 2 8 8 C 1.50702 * 126.75228 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47413 * 94.99813 * 8 7 6 10 10 C 1.46903 * 111.00133 * 190.00079 * 9 8 7 11 11 C 1.53230 * 109.33899 * 187.25239 * 10 9 8 12 12 N 1.47080 * 108.52531 * 306.16795 * 11 10 9 13 13 C 1.36931 * 120.88364 * 231.18821 * 12 11 10 14 14 H 1.07994 * 120.00368 * 26.84029 * 13 12 11 15 15 C 1.38812 * 119.99721 * 206.56279 * 13 12 11 16 16 N 1.31619 * 120.00606 * 17.47328 * 15 13 12 17 17 Si 1.86807 * 119.99780 * 197.47555 * 15 13 12 18 18 H 1.48504 * 109.46947 * 94.38387 * 17 15 13 19 19 H 1.48508 * 109.46899 * 214.38152 * 17 15 13 20 20 H 1.48495 * 109.47303 * 334.38014 * 17 15 13 21 21 C 1.47082 * 118.23403 * 51.45931 * 12 11 10 22 22 C 1.46904 * 110.99940 * 314.30418 * 9 8 7 23 23 N 1.33766 * 106.49982 * 0.26152 * 7 6 5 24 24 N 1.28637 * 108.88350 * 359.56683 * 23 7 6 25 25 H 1.09004 * 109.47165 * 300.00319 * 1 2 3 26 26 H 1.09005 * 109.47298 * 59.99582 * 1 2 3 27 27 H 1.09002 * 109.47891 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46548 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46921 * 299.99814 * 3 2 1 30 30 H 1.08994 * 109.46994 * 60.00197 * 3 2 1 31 31 H 1.08997 * 109.47381 * 300.00080 * 4 2 1 32 32 H 1.09000 * 109.47496 * 60.00153 * 4 2 1 33 33 H 1.09006 * 109.47199 * 180.02562 * 4 2 1 34 34 H 1.08005 * 126.90873 * 0.02562 * 6 5 2 35 35 H 1.09004 * 109.47227 * 334.99477 * 8 7 6 36 36 H 1.09004 * 109.47144 * 215.00223 * 8 7 6 37 37 H 1.09001 * 109.49186 * 67.29185 * 10 9 8 38 38 H 1.08999 * 109.49207 * 307.21639 * 10 9 8 39 39 H 1.09004 * 109.63143 * 186.45915 * 11 10 9 40 40 H 1.09004 * 109.63158 * 65.88032 * 11 10 9 41 41 H 0.96993 * 120.00972 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.63087 * 68.24805 * 21 12 11 43 43 H 1.08996 * 109.63194 * 188.83501 * 21 12 11 44 44 H 1.09005 * 109.48966 * 292.70358 * 22 9 8 45 45 H 1.08993 * 109.49068 * 52.75434 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0149 -2.0289 1.3958 7 6 2.5516 -2.2285 2.6222 8 6 2.7676 -3.5534 3.3073 9 7 4.1408 -4.0136 3.0616 10 6 4.3187 -5.4017 3.5083 11 6 5.7992 -5.7827 3.4035 12 7 6.2568 -5.5070 2.0331 13 6 6.9131 -6.4634 1.3055 14 1 6.7394 -7.5099 1.5081 15 6 7.7973 -6.0879 0.3035 16 7 8.2708 -4.8603 0.2695 17 14 8.3153 -7.3251 -0.9968 18 1 7.4401 -7.1864 -2.1885 19 1 9.7259 -7.0722 -1.3865 20 1 8.1919 -8.6998 -0.4492 21 6 5.9960 -4.1746 1.4673 22 6 4.5026 -3.8588 1.6462 23 7 2.8477 -1.0182 3.1089 24 7 2.5248 -0.1287 2.2375 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6765 -1.7489 -1.2493 32 1 1.6766 -0.2075 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 1.6568 -2.7857 0.7135 35 1 2.0629 -4.2855 2.9129 36 1 2.6094 -3.4380 4.3796 37 1 3.7268 -6.0653 2.8780 38 1 3.9914 -5.4953 4.5438 39 1 5.9209 -6.8433 3.6237 40 1 6.3807 -5.1902 4.1099 41 1 8.8889 -4.5980 -0.4304 42 1 6.5960 -3.4305 1.9912 43 1 6.2478 -4.1715 0.4068 44 1 3.9081 -4.5440 1.0418 45 1 4.3082 -2.8336 1.3312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191305995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:46 Heat of formation + Delta-G solvation = 132.011325 kcal Electronic energy + Delta-G solvation = -24546.535578 eV Core-core repulsion = 21216.378081 eV Total energy + Delta-G solvation = -3330.157496 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.23097 -38.17727 -37.46175 -34.59831 -32.17178 -31.61485 -30.57844 -29.81962 -28.07008 -27.90483 -27.06880 -24.71851 -23.64817 -22.59671 -22.38890 -21.02093 -19.69093 -18.90393 -17.12944 -16.74065 -16.36177 -15.13727 -14.92859 -14.75348 -14.48859 -14.33721 -14.11310 -14.07008 -13.42895 -13.14681 -13.02756 -12.98308 -12.81378 -12.70804 -12.30533 -12.19827 -11.81997 -11.68306 -11.59670 -11.40970 -11.21130 -11.02925 -10.74162 -10.62270 -10.42487 -10.26928 -10.02102 -9.93023 -9.73839 -9.54479 -8.99237 -8.47227 -7.70457 -6.62520 -5.74358 -3.15436 1.70416 2.28053 2.70082 3.38243 3.45302 3.47177 4.02189 4.26998 4.37765 4.46502 4.51068 4.60070 4.91604 5.03272 5.04002 5.18405 5.21580 5.24378 5.32680 5.37281 5.41803 5.50705 5.53505 5.56428 5.68985 5.74687 5.86808 5.94531 5.98339 6.14244 6.21635 6.27616 6.31097 6.38052 6.59946 6.71134 6.76524 7.00551 7.30103 7.65656 7.71582 7.76597 7.86615 8.46964 8.70983 9.24749 9.88677 10.47912 11.34234 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.004220 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.700737 B = 6633.177701 C = 7612.528965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.164 3.836 3 C -0.149 4.149 4 C -0.162 4.162 5 N -0.283 5.283 6 C -0.047 4.047 7 C -0.003 4.003 8 C 0.138 3.862 9 N -0.525 5.525 10 C 0.046 3.954 11 C 0.148 3.852 12 N -0.596 5.596 13 C -0.250 4.250 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.180 3.820 22 C 0.038 3.962 23 N -0.254 5.254 24 N -0.089 5.089 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.182 0.818 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.028 0.972 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.027 0.973 41 H 0.253 0.747 42 H 0.025 0.975 43 H 0.086 0.914 44 H 0.022 0.978 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 8.674 -2.357 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.082 3.918 3 C -0.207 4.207 4 C -0.220 4.220 5 N -0.078 5.078 6 C -0.198 4.198 7 C -0.141 4.141 8 C 0.009 3.991 9 N -0.250 5.250 10 C -0.084 4.084 11 C 0.022 3.978 12 N -0.319 5.319 13 C -0.380 4.380 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.054 3.946 22 C -0.091 4.091 23 N -0.120 5.120 24 N -0.067 5.067 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.199 0.801 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.104 0.896 44 H 0.040 0.960 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.101 10.380 -1.549 20.065 hybrid contribution -0.564 -2.061 -1.895 2.856 sum -17.665 8.319 -3.444 19.827 Atomic orbital electron populations 1.22238 0.92039 1.03519 1.03805 1.21116 0.95161 0.94123 0.81444 1.21994 1.02864 0.92229 1.03570 1.22268 1.03137 1.01135 0.95475 1.47574 1.40178 1.05493 1.14575 1.23230 1.09452 0.86624 1.00524 1.21782 1.02967 0.95682 0.93718 1.20341 0.90877 0.88165 0.99758 1.62052 1.20387 1.21892 1.20709 1.22633 1.00015 0.87202 0.98514 1.20978 0.90711 0.97965 0.88171 1.44161 1.66000 1.11891 1.09852 1.19228 1.17688 0.88005 1.13094 0.91580 1.25017 0.96833 0.96627 1.01293 1.70045 1.32898 1.17955 1.33886 0.86289 0.77536 0.80909 0.82154 1.21638 1.21777 1.20397 1.20926 0.87852 0.85892 0.99921 1.22982 1.00945 0.98700 0.86482 1.75085 1.17113 0.98029 1.21800 1.78244 1.14099 1.22389 0.92005 0.91380 0.89782 0.91461 0.91021 0.90316 0.90661 0.91182 0.89621 0.90811 0.80111 0.93940 0.89533 0.95363 0.91774 0.92550 0.95555 0.93694 0.95670 0.89591 0.95991 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.72 37.16 0.32 -0.72 16 2 C 0.16 1.45 1.23 -131.82 -0.16 1.29 16 3 C -0.15 -1.23 8.05 37.16 0.30 -0.93 16 4 C -0.16 -1.25 8.29 37.16 0.31 -0.95 16 5 N -0.28 -3.65 3.18 -48.55 -0.15 -3.80 16 6 C -0.05 -0.62 9.39 -17.05 -0.16 -0.78 16 7 C 0.00 -0.05 5.16 -82.78 -0.43 -0.47 16 8 C 0.14 2.14 5.84 -4.98 -0.03 2.12 16 9 N -0.52 -9.95 4.77 -235.47 -1.12 -11.07 16 10 C 0.05 0.84 5.58 -3.70 -0.02 0.82 16 11 C 0.15 3.25 6.69 -3.61 -0.02 3.23 16 12 N -0.60 -15.51 3.03 -171.74 -0.52 -16.03 16 13 C -0.25 -7.00 9.63 -15.06 -0.15 -7.15 16 14 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 15 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 16 N -0.90 -26.79 11.16 55.49 0.62 -26.17 16 17 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.18 4.56 5.45 -3.36 -0.02 4.54 16 22 C 0.04 0.78 5.07 -3.46 -0.02 0.76 16 23 N -0.25 -4.57 12.41 33.29 0.41 -4.16 16 24 N -0.09 -1.43 12.18 60.35 0.74 -0.70 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.67 8.03 -51.93 -0.42 0.26 16 31 H 0.07 0.52 7.39 -51.93 -0.38 0.14 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.18 1.90 7.59 -52.48 -0.40 1.50 16 35 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 39 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 2.38 6.11 -51.93 -0.32 2.06 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 1.15 5.76 -51.93 -0.30 0.85 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -33.35 354.59 -7.57 -40.92 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.69 Total: -2.83 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.16 Total: 1.69 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.03 Total: -61.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.35 -7.57 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191305995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.930 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds