Wall clock time and date at job start Tue Mar 31 2020 03:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99984 * 2 1 4 4 H 1.48499 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47486 * 299.99925 * 3 2 1 6 6 H 1.48503 * 109.46874 * 60.00313 * 3 2 1 7 7 C 1.37874 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99985 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00202 * 359.97438 * 7 2 1 10 10 S 1.81392 * 109.47063 * 180.02562 * 9 7 2 11 11 O 1.42100 * 110.54362 * 68.37842 * 10 9 7 12 12 O 1.42105 * 110.54626 * 291.62752 * 10 9 7 13 13 C 1.76195 * 104.45127 * 180.02562 * 10 9 7 14 14 C 1.38233 * 120.00186 * 89.99428 * 13 10 9 15 15 C 1.38234 * 120.00037 * 179.72636 * 14 13 10 16 16 C 1.38234 * 120.00240 * 0.26327 * 15 14 13 17 17 C 1.50700 * 120.00260 * 179.97438 * 16 15 14 18 18 F 1.39904 * 109.46998 * 89.99804 * 17 16 15 19 19 F 1.39906 * 109.47073 * 209.99959 * 17 16 15 20 20 F 1.39899 * 109.47068 * 330.00293 * 17 16 15 21 21 C 1.38238 * 119.99693 * 0.02562 * 16 15 14 22 22 C 1.38234 * 120.00047 * 359.95697 * 21 16 15 23 23 H 0.96998 * 120.00216 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.46614 * 60.00135 * 9 7 2 25 25 H 1.08997 * 109.46808 * 300.00086 * 9 7 2 26 26 H 1.08002 * 120.00157 * 0.02562 * 14 13 10 27 27 H 1.07999 * 120.00009 * 180.28389 * 15 14 13 28 28 H 1.08001 * 119.99658 * 179.97438 * 21 16 15 29 29 H 1.07999 * 119.99990 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 16 2.4296 -3.8780 -0.0005 11 8 3.1263 -3.9384 1.2365 12 8 3.1265 -3.9383 -1.2375 13 6 1.4185 -5.3209 -0.0013 14 6 1.0222 -5.8866 -1.1987 15 6 0.2336 -7.0219 -1.1993 16 6 -0.1632 -7.5885 -0.0024 17 6 -1.0234 -8.8259 -0.0031 18 9 -0.2065 -9.9617 -0.0007 19 9 -1.8333 -8.8314 1.1378 20 9 -1.8289 -8.8333 -1.1469 21 6 0.2282 -7.0194 1.1950 22 6 1.0171 -5.8842 1.1956 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 1.3326 -5.4443 -2.1338 27 1 -0.0723 -7.4665 -2.1348 28 1 -0.0822 -7.4618 2.1301 29 1 1.3232 -5.4399 2.1311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228852787.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:10 Heat of formation + Delta-G solvation = -202.338377 kcal Electronic energy + Delta-G solvation = -20935.238077 eV Core-core repulsion = 16921.674773 eV Total energy + Delta-G solvation = -4013.563305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.032 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.38609 -47.89489 -47.84889 -39.40188 -36.31600 -35.16617 -33.46645 -32.38413 -31.29120 -29.17000 -26.47237 -23.66114 -23.14118 -22.39520 -18.88161 -18.70033 -18.57896 -18.51083 -17.36985 -16.47291 -15.70719 -15.53513 -15.06913 -14.72978 -14.69184 -14.43765 -14.34101 -14.29599 -14.08561 -14.00027 -13.81942 -13.58683 -13.15028 -12.59946 -12.26784 -12.00939 -11.55822 -11.52198 -11.30954 -11.19324 -11.00327 -10.73979 -10.48490 -9.91497 -9.77279 -9.24071 -9.21839 -8.81447 -6.43278 -4.55284 0.37146 0.94580 1.09177 2.40294 3.10892 3.14991 3.22624 3.29108 3.44944 3.69746 3.78725 4.16635 4.18534 4.48554 4.62689 4.66823 4.87107 4.98585 5.15707 5.35709 5.35828 5.72758 5.75701 5.88938 6.02134 6.53489 6.53960 6.59111 7.33099 7.62202 8.46673 9.13536 10.68125 Molecular weight = 294.03amu Principal moments of inertia in cm(-1) A = 0.030330 B = 0.003896 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.943396 B = 7185.327674 C = 7476.514794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.074 0.926 9 C -0.390 4.390 10 S 2.459 3.541 11 O -0.954 6.954 12 O -0.954 6.954 13 C -0.622 4.622 14 C -0.026 4.026 15 C -0.095 4.095 16 C -0.147 4.147 17 C 0.508 3.492 18 F -0.176 7.176 19 F -0.175 7.175 20 F -0.175 7.175 21 C -0.095 4.095 22 C -0.026 4.026 23 H 0.270 0.730 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.154 0.846 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 -14.313 -0.005 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.092 0.908 9 C -0.526 4.526 10 S 2.641 3.359 11 O -0.951 6.951 12 O -0.951 6.951 13 C -0.703 4.703 14 C -0.045 4.045 15 C -0.113 4.113 16 C -0.148 4.148 17 C 0.453 3.547 18 F -0.157 7.157 19 F -0.156 7.156 20 F -0.156 7.156 21 C -0.113 4.113 22 C -0.045 4.045 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.172 0.828 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.804 -14.357 -0.005 14.628 hybrid contribution -0.796 0.268 0.001 0.840 sum -3.600 -14.088 -0.004 14.541 Atomic orbital electron populations 1.69953 1.06280 1.27867 1.47184 1.24928 0.95041 0.99640 0.93301 0.86272 0.80403 0.81894 0.78145 1.18873 1.20266 1.20272 1.20387 0.92992 0.88309 1.56056 0.90795 1.27457 1.09364 1.08371 1.07386 1.07073 0.78140 0.76191 0.74491 1.93474 1.70833 1.86359 1.44452 1.93474 1.70838 1.86360 1.44453 1.31683 1.16835 1.23082 0.98728 1.21038 0.92202 0.93406 0.97819 1.21055 0.97177 0.96115 0.96991 1.20209 1.01877 0.95881 0.96880 1.18330 0.78681 0.83937 0.73704 1.93233 1.72537 1.53756 1.96156 1.93201 1.74578 1.96764 1.51100 1.93200 1.74817 1.96765 1.50861 1.21056 0.97198 0.96101 0.96983 1.21038 0.92185 0.93430 0.97821 0.92060 0.89123 0.89137 0.82841 0.84002 0.84001 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.67 13.29 55.43 0.74 -22.94 15 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 15 3 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 15 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.54 -13.99 9.13 -34.44 -0.31 -14.30 15 8 H 0.07 1.88 7.71 -52.49 -0.40 1.48 15 9 C -0.39 -8.69 5.74 36.01 0.21 -8.49 15 10 S 2.46 48.38 5.08 -107.50 -0.55 47.83 15 11 O -0.95 -20.68 17.14 -57.54 -0.99 -21.66 15 12 O -0.95 -20.68 17.12 -57.54 -0.99 -21.66 15 13 C -0.62 -10.00 5.66 -39.58 -0.22 -10.22 15 14 C -0.03 -0.38 9.47 -39.58 -0.37 -0.75 15 15 C -0.09 -1.18 9.40 -39.58 -0.37 -1.55 15 16 C -0.15 -1.83 5.45 -104.62 -0.57 -2.40 15 17 C 0.51 5.79 3.36 36.01 0.12 5.91 15 18 F -0.18 -2.03 17.30 2.25 0.04 -1.99 15 19 F -0.18 -1.99 16.46 2.25 0.04 -1.95 15 20 F -0.18 -1.99 16.46 2.25 0.04 -1.95 15 21 C -0.09 -1.18 9.40 -39.58 -0.37 -1.55 15 22 C -0.03 -0.38 9.47 -39.58 -0.37 -0.75 15 23 H 0.27 6.79 8.31 -40.82 -0.34 6.46 15 24 H 0.09 1.98 8.14 -51.93 -0.42 1.55 15 25 H 0.09 1.97 8.14 -51.93 -0.42 1.55 15 26 H 0.15 2.00 7.57 -52.49 -0.40 1.61 15 27 H 0.14 1.39 7.60 -52.49 -0.40 0.99 15 28 H 0.14 1.39 7.60 -52.49 -0.40 0.99 15 29 H 0.15 2.00 7.58 -52.49 -0.40 1.60 15 LS Contribution 288.91 15.07 4.35 4.35 Total: -1.00 -30.78 288.91 -6.68 -37.46 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -1.98 Total: -0.37 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: -2.37 Total: -32.17 kcal Atomic # 7 Polarization: -23.67 SS G_CDS: 0.74 Total: -22.94 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.97 Total: -43.33 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.11 Total: -5.90 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 48.38 SS G_CDS: -0.55 Total: 47.83 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.78 -6.68 -37.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228852787.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.876 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds