Wall clock time and date at job start Tue Mar 31 2020 03:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86806 * 119.99509 * 2 1 4 4 H 1.48498 * 109.47148 * 269.99721 * 3 2 1 5 5 H 1.48496 * 109.47258 * 29.99744 * 3 2 1 6 6 H 1.48498 * 109.46774 * 150.00003 * 3 2 1 7 7 C 1.39945 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00053 * 195.20215 * 7 2 1 9 9 C 1.41347 * 119.99731 * 15.20608 * 7 2 1 10 10 C 1.40723 * 120.25472 * 25.46796 * 9 7 2 11 11 C 1.36578 * 119.87497 * 180.23216 * 10 9 7 12 12 C 1.38669 * 120.41093 * 359.49258 * 11 10 9 13 13 C 1.38565 * 120.51847 * 0.23958 * 12 11 10 14 14 C 1.50701 * 119.94818 * 179.97438 * 13 12 11 15 15 F 1.39898 * 109.46959 * 0.02562 * 14 13 12 16 16 F 1.39903 * 109.47215 * 119.99769 * 14 13 12 17 17 F 1.39891 * 109.47529 * 240.00204 * 14 13 12 18 18 C 1.37818 * 120.11062 * 0.02562 * 13 12 11 19 19 Br 1.89104 * 120.20849 * 179.97438 * 18 13 12 20 20 H 0.97003 * 120.00297 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.06086 * 0.02562 * 10 9 7 22 22 H 1.08003 * 119.79060 * 179.77618 * 11 10 9 23 23 H 1.07998 * 119.74378 * 180.25648 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0597 -1.2281 0.2458 9 6 1.3385 -2.4147 -0.3200 10 6 0.1876 -2.3915 -1.1294 11 6 -0.4561 -3.5579 -1.4304 12 6 0.0233 -4.7679 -0.9518 13 6 1.1583 -4.8107 -0.1582 14 6 1.6678 -6.1327 0.3554 15 9 0.8358 -7.1615 -0.0991 16 9 2.9690 -6.3448 -0.1128 17 9 1.6719 -6.1194 1.7542 18 6 1.8215 -3.6461 0.1633 19 35 3.3704 -3.7013 1.2469 20 1 -0.4851 0.8400 -0.0004 21 1 -0.1880 -1.4528 -1.5091 22 1 -1.3414 -3.5381 -2.0487 23 1 -0.4918 -5.6841 -1.1999 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238573051.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:58 Heat of formation + Delta-G solvation = -146.201630 kcal Electronic energy + Delta-G solvation = -16034.221109 eV Core-core repulsion = 12670.787590 eV Total energy + Delta-G solvation = -3363.433519 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 293.956 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.06451 -48.58806 -48.49703 -39.71242 -35.85288 -33.10561 -32.33976 -30.23288 -27.31405 -26.59205 -22.83321 -22.52462 -19.91115 -19.38695 -19.27057 -18.04567 -17.11482 -16.49862 -15.74002 -15.46663 -15.25444 -15.14579 -14.98411 -14.75140 -14.70166 -14.27387 -13.93507 -13.52800 -13.15641 -12.92231 -12.70106 -12.32477 -11.92377 -11.57215 -11.47639 -11.17174 -10.65820 -9.74279 -9.41842 -8.77932 -6.52544 0.41153 0.70371 1.12118 1.40540 1.48465 1.52904 1.81596 2.17976 2.52718 2.90016 3.21717 3.30808 3.63214 4.37433 4.53841 4.82081 4.97327 5.15279 5.20020 5.43147 5.76870 5.86132 6.02248 6.42649 6.68249 6.73077 8.17993 Molecular weight = 293.96amu Principal moments of inertia in cm(-1) A = 0.025081 B = 0.008404 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.123794 B = 3330.977937 C = 4212.302982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.042 3.958 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.467 4.467 8 H 0.090 0.910 9 C 0.100 3.900 10 C -0.146 4.146 11 C -0.095 4.095 12 C -0.191 4.191 13 C -0.137 4.137 14 C 0.509 3.491 15 F -0.176 7.176 16 F -0.178 7.178 17 F -0.179 7.179 18 C -0.186 4.186 19 Br -0.074 7.074 20 H 0.296 0.704 21 H 0.125 0.875 22 H 0.138 0.862 23 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -3.605 -0.445 4.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.495 4.495 8 H 0.108 0.892 9 C 0.096 3.904 10 C -0.166 4.166 11 C -0.113 4.113 12 C -0.211 4.211 13 C -0.140 4.140 14 C 0.455 3.545 15 F -0.158 7.158 16 F -0.159 7.159 17 F -0.161 7.161 18 C -0.267 4.267 19 Br 0.011 6.989 20 H 0.107 0.893 21 H 0.143 0.857 22 H 0.156 0.844 23 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.141 -3.507 0.001 4.109 hybrid contribution -0.005 0.418 -0.013 0.418 sum 2.136 -3.089 -0.012 3.756 Atomic orbital electron populations 1.69787 1.08812 1.31424 1.33041 1.26732 0.95532 1.04400 0.90902 0.85202 0.79151 0.75745 0.79858 1.18199 1.18990 1.18441 1.20030 0.98116 0.91193 1.40140 0.89229 1.17717 0.92186 0.91067 0.89468 1.21409 0.97538 0.98382 0.99275 1.20854 0.99523 0.91703 0.99249 1.20587 0.97330 0.99189 1.03963 1.19592 1.00049 0.89799 1.04555 1.18335 0.75305 0.85402 0.75452 1.93108 1.71866 1.61892 1.88899 1.93176 1.38718 1.95598 1.88443 1.93175 1.96299 1.96826 1.29755 1.21411 0.99703 0.95607 1.09967 1.96331 1.35934 1.98852 1.67750 0.89293 0.85712 0.84411 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.62 10.87 21.83 0.24 -37.39 14 2 C 0.04 1.93 5.19 85.26 0.44 2.37 14 3 Si 0.98 35.10 29.59 68.60 2.03 37.13 14 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 5 H -0.27 -9.03 7.11 99.48 0.71 -8.32 14 6 H -0.26 -9.39 7.11 99.48 0.71 -8.68 14 7 C -0.47 -23.05 8.47 23.45 0.20 -22.85 14 8 H 0.09 4.38 6.88 -2.91 -0.02 4.36 14 9 C 0.10 4.98 5.57 -21.27 -0.12 4.86 14 10 C -0.15 -6.80 8.64 22.49 0.19 -6.61 14 11 C -0.09 -3.83 9.97 21.98 0.22 -3.61 14 12 C -0.19 -7.61 9.44 22.45 0.21 -7.39 14 13 C -0.14 -5.91 5.37 -19.89 -0.11 -6.02 14 14 C 0.51 19.89 2.83 71.24 0.20 20.09 14 15 F -0.18 -6.21 15.96 44.97 0.72 -5.49 14 16 F -0.18 -6.91 16.15 44.97 0.73 -6.18 14 17 F -0.18 -7.09 16.14 44.97 0.73 -6.37 14 18 C -0.19 -8.80 6.22 22.80 0.14 -8.66 14 19 Br -0.07 -3.15 29.25 -20.37 -0.60 -3.75 14 20 H 0.30 12.36 8.30 -92.71 -0.77 11.59 14 21 H 0.13 5.92 6.13 -2.91 -0.02 5.91 14 22 H 0.14 4.55 8.06 -2.91 -0.02 4.53 14 23 H 0.14 4.69 7.14 -2.91 -0.02 4.67 14 Total: -1.00 -50.48 237.49 6.50 -43.99 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.27 Total: 5.87 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 1.38 Total: -27.82 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.24 Total: -37.39 kcal Atomic # 9 Polarization: -20.21 SS G_CDS: 2.17 Total: -18.04 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.13 kcal Atomic # 35 Polarization: -3.15 SS G_CDS: -0.60 Total: -3.75 kcal Total: -50.48 6.50 -43.99 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238573051.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.215 kcal (2) G-P(sol) polarization free energy of solvation -50.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds