Wall clock time and date at job start Tue Mar 31 2020 04:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37095 * 119.99753 * 2 1 4 4 H 1.07995 * 120.00082 * 154.70872 * 3 2 1 5 5 C 1.38958 * 120.00037 * 334.70943 * 3 2 1 6 6 N 1.31410 * 119.99587 * 160.04610 * 5 3 2 7 7 Si 1.86800 * 119.99985 * 340.04738 * 5 3 2 8 8 H 1.48497 * 109.47277 * 90.83203 * 7 5 3 9 9 H 1.48500 * 109.46783 * 210.83320 * 7 5 3 10 10 H 1.48496 * 109.47082 * 330.82965 * 7 5 3 11 11 C 1.34773 * 119.99835 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99543 * 183.11178 * 11 2 1 13 13 C 1.50701 * 120.00366 * 3.11319 * 11 2 1 14 14 H 1.08994 * 109.39771 * 315.50123 * 13 11 2 15 15 C 1.53069 * 109.39673 * 195.75426 * 13 11 2 16 16 C 1.53363 * 108.41641 * 288.77843 * 15 13 11 17 17 C 1.52920 * 108.66249 * 292.45121 * 16 15 13 18 18 H 1.09003 * 109.30439 * 290.44978 * 17 16 15 19 19 C 1.52996 * 109.30255 * 171.07215 * 17 16 15 20 20 F 1.39900 * 109.47265 * 298.96294 * 19 17 16 21 21 F 1.39901 * 109.47012 * 58.96465 * 19 17 16 22 22 F 1.39903 * 109.47398 * 178.96379 * 19 17 16 23 23 N 1.45755 * 110.48872 * 50.75977 * 17 16 15 24 24 C 1.33352 * 124.10691 * 340.94878 * 23 17 16 25 25 O 1.21286 * 118.24952 * 182.19885 * 24 23 17 26 26 H 1.09004 * 109.46683 * 214.45450 * 1 2 3 27 27 H 1.08994 * 109.47452 * 94.45706 * 1 2 3 28 28 H 1.08999 * 109.46888 * 334.45117 * 1 2 3 29 29 H 0.96998 * 119.99317 * 179.97438 * 6 5 3 30 30 H 1.08996 * 109.67989 * 48.50755 * 15 13 11 31 31 H 1.09001 * 109.66638 * 169.03850 * 15 13 11 32 32 H 1.08996 * 109.60197 * 172.70332 * 16 15 13 33 33 H 1.09004 * 109.75141 * 52.28622 * 16 15 13 34 34 H 0.97008 * 117.94950 * 160.92250 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1528 1.2322 0.3996 5 6 1.5555 2.3330 -0.5141 6 7 2.0126 3.5182 -0.1775 7 14 0.1061 2.1884 -1.6836 8 1 -1.1596 2.2011 -0.9072 9 1 0.1178 3.3326 -2.6301 10 1 0.2081 0.9166 -2.4433 11 6 2.1389 -1.1672 -0.0005 12 8 3.3505 -1.1679 0.0565 13 6 1.3871 -2.4713 -0.0720 14 1 0.5380 -2.4376 0.6106 15 6 2.3176 -3.6173 0.3328 16 6 3.3462 -3.8244 -0.7858 17 6 2.6224 -4.3547 -2.0241 18 1 2.2861 -5.3743 -1.8358 19 6 3.5869 -4.3562 -3.2117 20 9 4.0140 -3.0487 -3.4673 21 9 4.6935 -5.1582 -2.9128 22 9 2.9352 -4.8629 -4.3412 23 7 1.4712 -3.5183 -2.3395 24 6 0.8922 -2.6856 -1.4735 25 8 -0.0867 -2.0687 -1.8372 26 1 -0.3633 -0.8474 0.5814 27 1 -0.3634 -0.0799 -1.0245 28 1 -0.3633 0.9272 0.4432 29 1 1.5975 4.3179 -0.5367 30 1 2.8305 -3.3636 1.2605 31 1 1.7373 -4.5295 0.4714 32 1 4.0965 -4.5463 -0.4636 33 1 3.8289 -2.8762 -1.0225 34 1 1.1033 -3.5702 -3.2356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263829219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:31 Heat of formation + Delta-G solvation = -206.298389 kcal Electronic energy + Delta-G solvation = -25544.960813 eV Core-core repulsion = 21256.598764 eV Total energy + Delta-G solvation = -4288.362049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.24878 -47.79706 -47.64915 -40.79837 -38.26672 -36.84500 -34.88707 -33.04094 -32.02586 -30.64094 -27.28743 -26.42851 -24.80369 -23.30273 -22.75294 -20.50974 -18.86926 -18.55404 -18.36318 -17.92164 -17.20201 -17.04047 -16.25323 -16.08948 -15.42013 -14.81079 -14.69737 -14.47012 -14.26088 -14.17192 -14.00827 -13.84829 -13.79584 -13.55635 -13.33933 -13.03083 -12.64767 -12.45365 -12.28219 -12.10345 -11.72485 -11.41910 -11.17390 -10.99844 -10.50271 -10.30990 -9.78971 -9.71825 -9.43217 -9.19200 -8.56427 -7.84595 -6.42584 -3.93920 2.30443 2.67195 2.85192 3.10022 3.26912 3.35978 3.50310 3.58626 3.79884 4.08483 4.15521 4.30486 4.53941 4.62779 4.68787 4.84317 4.99763 5.09592 5.39737 5.53787 5.62684 5.73085 5.96966 6.01480 6.24206 6.35404 6.43778 6.58994 7.03748 7.44076 8.11741 8.16415 8.42234 8.87733 9.28905 9.65342 10.68441 Molecular weight = 294.10amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.005756 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.730366 B = 4863.272138 C = 4931.007960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.446 5.446 3 C -0.318 4.318 4 H 0.116 0.884 5 C 0.057 3.943 6 N -0.861 5.861 7 Si 0.882 3.118 8 H -0.276 1.276 9 H -0.291 1.291 10 H -0.258 1.258 11 C 0.459 3.541 12 O -0.562 6.562 13 C -0.127 4.127 14 H 0.121 0.879 15 C -0.092 4.092 16 C -0.147 4.147 17 C 0.107 3.893 18 H 0.116 0.884 19 C 0.440 3.560 20 F -0.168 7.168 21 F -0.176 7.176 22 F -0.185 7.185 23 N -0.714 5.714 24 C 0.544 3.456 25 O -0.527 6.527 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.275 0.725 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 -18.295 -2.564 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.165 5.165 3 C -0.445 4.445 4 H 0.133 0.867 5 C -0.149 4.149 6 N -0.498 5.498 7 Si 0.709 3.291 8 H -0.202 1.202 9 H -0.219 1.219 10 H -0.182 1.182 11 C 0.246 3.754 12 O -0.445 6.445 13 C -0.152 4.152 14 H 0.139 0.861 15 C -0.130 4.130 16 C -0.185 4.185 17 C -0.001 4.001 18 H 0.134 0.866 19 C 0.385 3.615 20 F -0.149 7.149 21 F -0.157 7.157 22 F -0.166 7.166 23 N -0.369 5.369 24 C 0.331 3.669 25 O -0.402 6.402 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.533 -17.672 -2.521 17.917 hybrid contribution -0.829 0.010 -1.330 1.567 sum -2.363 -17.662 -3.850 18.231 Atomic orbital electron populations 1.22364 0.82578 1.02272 1.02667 1.43716 1.04521 1.05744 1.62488 1.19238 1.02402 0.82750 1.40145 0.86691 1.25261 0.98107 0.94717 0.96781 1.69737 1.41780 0.97594 1.40643 0.87073 0.81925 0.78145 0.81928 1.20172 1.21852 1.18239 1.19129 0.87587 0.83516 0.85213 1.90515 1.13131 1.85904 1.54963 1.21475 1.01532 0.97908 0.94243 0.86121 1.21378 0.96000 0.96162 0.99479 1.22246 0.98713 1.05639 0.91878 1.22192 0.86279 0.98441 0.93179 0.86640 1.20964 0.81518 0.74276 0.84781 1.93277 1.90608 1.36308 1.94723 1.93192 1.55499 1.73927 1.93106 1.93183 1.80959 1.87405 1.55102 1.45295 1.31273 1.43698 1.16640 1.19785 0.82596 0.77346 0.87204 1.90763 1.26385 1.45006 1.78076 0.92103 0.91075 0.90741 0.91437 0.88823 0.90970 0.88694 0.86322 0.75945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 6.78 59.85 0.41 1.36 16 2 N -0.45 -10.99 2.81 -122.19 -0.34 -11.34 16 3 C -0.32 -9.11 9.66 -14.93 -0.14 -9.25 16 4 H 0.12 3.64 7.63 -52.49 -0.40 3.24 16 5 C 0.06 1.62 5.23 -17.47 -0.09 1.53 16 6 N -0.86 -25.14 13.96 55.50 0.77 -24.37 16 7 Si 0.88 21.57 24.04 -169.99 -4.09 17.49 16 8 H -0.28 -6.29 6.72 56.52 0.38 -5.91 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 10 H -0.26 -6.50 6.37 56.52 0.36 -6.14 16 11 C 0.46 10.25 6.65 -10.99 -0.07 10.18 16 12 O -0.56 -13.92 13.68 5.55 0.08 -13.84 16 13 C -0.13 -2.07 2.20 -93.14 -0.20 -2.28 16 14 H 0.12 1.73 6.51 -51.93 -0.34 1.40 16 15 C -0.09 -1.14 5.16 -26.51 -0.14 -1.28 16 16 C -0.15 -1.84 4.85 -26.58 -0.13 -1.96 16 17 C 0.11 1.17 3.04 -68.38 -0.21 0.96 16 18 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 19 C 0.44 5.25 2.79 37.16 0.10 5.35 16 20 F -0.17 -2.59 16.60 2.25 0.04 -2.55 16 21 F -0.18 -1.98 16.92 2.25 0.04 -1.94 16 22 F -0.19 -2.10 16.87 2.25 0.04 -2.07 16 23 N -0.71 -9.60 5.04 -54.85 -0.28 -9.87 16 24 C 0.54 9.12 6.91 -11.87 -0.08 9.04 16 25 O -0.53 -10.42 14.89 5.55 0.08 -10.34 16 26 H 0.06 1.06 6.27 -51.93 -0.33 0.74 16 27 H 0.07 1.60 3.65 -51.93 -0.19 1.41 16 28 H 0.07 1.61 5.89 -51.93 -0.31 1.31 16 29 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.09 1.19 7.98 -51.93 -0.41 0.78 16 31 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.09 0.91 8.03 -51.93 -0.42 0.50 16 33 H 0.12 2.00 5.31 -51.93 -0.28 1.73 16 34 H 0.40 5.02 8.27 -40.82 -0.34 4.69 16 LS Contribution 282.39 15.07 4.26 4.26 Total: -1.00 -33.15 282.39 -3.01 -36.16 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.05 Total: 4.76 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -0.56 Total: 13.64 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.15 Total: -45.58 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.16 Total: -24.18 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.11 Total: -6.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.09 Total: 17.49 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.15 -3.01 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263829219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.136 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds