Wall clock time and date at job start Tue Mar 31 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47060 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46941 * 120.00068 * 3 2 1 6 6 H 1.48497 * 109.47304 * 240.00283 * 3 2 1 7 7 C 1.38951 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99768 * 202.93567 * 7 2 1 9 9 N 1.37091 * 120.00010 * 22.93833 * 7 2 1 10 10 C 1.34781 * 120.00576 * 43.56664 * 9 7 2 11 11 O 1.21294 * 119.99289 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00480 * 180.02562 * 10 9 7 13 13 C 1.50703 * 109.47308 * 179.97438 * 12 10 9 14 14 O 1.21283 * 119.99759 * 359.97438 * 13 12 10 15 15 N 1.34772 * 120.00042 * 179.97438 * 13 12 10 16 16 C 1.46504 * 119.99864 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47078 * 179.97438 * 16 15 13 18 18 F 1.39901 * 109.47103 * 59.99686 * 17 16 15 19 19 F 1.39889 * 109.47211 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47028 * 299.99632 * 17 16 15 21 21 C 1.46508 * 120.00134 * 223.56736 * 9 7 2 22 22 C 1.53002 * 117.49453 * 6.86562 * 21 9 7 23 23 C 1.53004 * 60.00148 * 252.51359 * 22 21 9 24 24 H 0.97001 * 119.99927 * 186.10193 * 1 2 3 25 25 H 1.09005 * 109.47198 * 299.99799 * 12 10 9 26 26 H 1.08998 * 109.47400 * 59.99751 * 12 10 9 27 27 H 0.96997 * 120.00285 * 359.97438 * 15 13 12 28 28 H 1.08999 * 109.46499 * 299.99586 * 16 15 13 29 29 H 1.08994 * 109.47105 * 59.99965 * 16 15 13 30 30 H 1.08999 * 115.55190 * 152.57525 * 21 9 7 31 31 H 1.08996 * 117.49764 * 0.02562 * 22 21 9 32 32 H 1.08999 * 117.49659 * 145.02224 * 22 21 9 33 33 H 1.08998 * 117.50051 * 252.51877 * 23 22 21 34 34 H 1.09000 * 117.51908 * 107.48332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6965 -1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0248 -1.2405 0.3639 9 7 1.4047 -2.3434 -0.4638 10 6 0.6757 -2.3073 -1.5969 11 8 0.5539 -1.2657 -2.2065 12 6 0.0112 -3.5603 -2.1057 13 6 -0.7364 -3.2516 -3.3773 14 8 -0.7306 -2.1248 -3.8258 15 7 -1.4115 -4.2277 -4.0160 16 6 -2.1379 -3.9277 -5.2524 17 6 -2.8117 -5.2002 -5.7697 18 9 -3.7072 -5.6781 -4.8069 19 9 -3.5057 -4.9137 -6.9500 20 9 -1.8386 -6.1725 -6.0247 21 6 1.5514 -3.6014 0.2729 22 6 2.2530 -3.5467 1.6314 23 6 2.9639 -4.1686 0.4278 24 1 -0.4850 -0.8353 0.0893 25 1 0.7688 -4.3185 -2.3042 26 1 -0.6867 -3.9319 -1.3554 27 1 -1.4159 -5.1290 -3.6574 28 1 -2.8957 -3.1699 -5.0537 29 1 -1.4400 -3.5559 -6.0026 30 1 0.7334 -4.3123 0.1567 31 1 2.6050 -2.5748 1.9773 32 1 1.8965 -4.2217 2.4095 33 1 3.0751 -5.2529 0.4139 34 1 3.7840 -3.6062 -0.0187 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272434365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:49 Heat of formation + Delta-G solvation = -181.878989 kcal Electronic energy + Delta-G solvation = -23996.620610 eV Core-core repulsion = 19709.317466 eV Total energy + Delta-G solvation = -4287.303144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.44092 -47.95354 -47.91612 -39.76079 -38.38265 -36.15982 -34.83556 -32.94030 -31.37047 -30.30431 -28.48730 -24.63234 -23.48423 -21.83785 -21.45246 -20.92774 -19.54005 -18.90557 -18.65718 -18.04926 -16.90141 -16.60693 -15.84441 -15.61949 -15.38616 -14.86008 -14.73304 -14.51317 -14.34884 -14.11467 -14.06957 -14.02768 -13.83713 -13.63349 -13.14752 -12.92678 -12.85836 -12.16069 -11.94097 -11.57462 -11.09143 -10.86767 -10.71108 -10.24632 -10.05887 -9.94125 -9.71569 -9.53271 -9.26824 -8.60470 -7.96881 -7.30765 -6.34212 -3.87075 2.27782 2.82811 2.90965 3.41133 3.44202 3.56522 3.70273 3.72317 3.92200 3.95849 4.34197 4.62298 4.76197 4.90134 4.95239 5.18210 5.27947 5.42507 5.47692 5.63275 5.66642 5.71630 5.94968 6.12272 6.13112 6.32015 6.62596 6.85418 7.36219 7.90115 8.41273 8.42919 8.82296 9.20460 9.57207 10.11350 10.93472 Molecular weight = 294.10amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.004049 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.018078 B = 6913.125803 C = 7817.101538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.041 3.959 3 Si 1.075 2.925 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.429 4.429 8 H 0.070 0.930 9 N -0.434 5.434 10 C 0.460 3.540 11 O -0.492 6.492 12 C -0.155 4.155 13 C 0.519 3.481 14 O -0.472 6.472 15 N -0.744 5.744 16 C 0.081 3.919 17 C 0.449 3.551 18 F -0.179 7.179 19 F -0.176 7.176 20 F -0.179 7.179 21 C 0.065 3.935 22 C -0.173 4.173 23 C -0.203 4.203 24 H 0.269 0.731 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.402 0.598 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 -14.370 -6.005 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.173 4.173 3 Si 0.902 3.098 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.555 4.555 8 H 0.088 0.912 9 N -0.157 5.157 10 C 0.245 3.755 11 O -0.366 6.366 12 C -0.199 4.199 13 C 0.304 3.696 14 O -0.340 6.340 15 N -0.403 5.403 16 C -0.045 4.045 17 C 0.394 3.606 18 F -0.161 7.161 19 F -0.157 7.157 20 F -0.161 7.161 21 C -0.041 4.041 22 C -0.210 4.210 23 C -0.242 4.242 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.237 0.763 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.014 -11.284 -6.769 13.757 hybrid contribution 0.003 -2.786 0.231 2.796 sum -4.011 -14.070 -6.538 16.025 Atomic orbital electron populations 1.70578 1.07507 1.30907 1.38256 1.26155 0.95952 1.02215 0.92947 0.83444 0.74987 0.75082 0.76300 1.20709 1.21630 1.21158 1.19697 0.98484 0.86825 1.50542 0.91246 1.42949 1.47658 1.06432 1.18629 1.19502 0.84831 0.88951 0.82219 1.90772 1.59456 1.30755 1.55664 1.21620 1.00884 1.01813 0.95539 1.20396 0.79010 0.84502 0.85690 1.90896 1.57963 1.20151 1.64984 1.45869 1.54947 1.13851 1.25657 1.22353 0.99072 0.92543 0.90499 1.20630 0.77416 0.86530 0.76015 1.93223 1.69517 1.89904 1.63416 1.93214 1.80258 1.93460 1.48769 1.93219 1.62581 1.66115 1.94183 1.21790 0.93935 0.90947 0.97388 1.23074 1.04278 1.02861 0.90829 1.23273 0.97905 0.98997 1.04066 0.92059 0.87466 0.87759 0.76306 0.86986 0.87040 0.88005 0.87350 0.89796 0.89763 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.85 12.36 55.50 0.69 -25.16 16 2 C 0.04 1.16 4.22 -17.47 -0.07 1.09 16 3 Si 1.07 26.03 29.98 -169.99 -5.10 20.93 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.43 -11.72 7.76 -14.94 -0.12 -11.84 16 8 H 0.07 1.86 7.42 -52.49 -0.39 1.47 16 9 N -0.43 -10.50 2.60 -107.72 -0.28 -10.78 16 10 C 0.46 11.33 6.43 -10.99 -0.07 11.26 16 11 O -0.49 -14.79 12.05 -18.97 -0.23 -15.02 16 12 C -0.15 -2.66 4.76 -29.04 -0.14 -2.80 16 13 C 0.52 9.15 7.82 -10.99 -0.09 9.07 16 14 O -0.47 -11.00 14.18 -18.96 -0.27 -11.27 16 15 N -0.74 -9.08 5.42 -60.29 -0.33 -9.41 16 16 C 0.08 0.87 5.64 -4.04 -0.02 0.85 16 17 C 0.45 4.25 3.11 37.16 0.12 4.37 16 18 F -0.18 -1.79 17.18 2.25 0.04 -1.75 16 19 F -0.18 -1.73 17.32 2.25 0.04 -1.69 16 20 F -0.18 -1.76 17.18 2.25 0.04 -1.72 16 21 C 0.07 1.22 5.96 -67.92 -0.40 0.81 16 22 C -0.17 -2.99 9.80 -26.73 -0.26 -3.25 16 23 C -0.20 -3.31 10.30 -26.73 -0.28 -3.58 16 24 H 0.27 8.28 7.42 -40.82 -0.30 7.98 16 25 H 0.11 1.49 8.11 -51.93 -0.42 1.07 16 26 H 0.10 1.50 7.57 -51.93 -0.39 1.11 16 27 H 0.40 3.71 8.36 -40.82 -0.34 3.37 16 28 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.10 1.57 6.84 -51.93 -0.36 1.22 16 31 H 0.11 2.15 6.82 -51.93 -0.35 1.80 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -36.43 308.62 -5.55 -41.98 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -3.47 Total: 3.24 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -1.33 Total: 5.98 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.08 Total: -45.34 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.50 Total: -26.28 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.12 Total: -5.16 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.10 Total: 20.93 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.43 -5.55 -41.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272434365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.903 kcal (2) G-P(sol) polarization free energy of solvation -36.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds