Wall clock time and date at job start Tue Mar 31 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47060 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46941 * 120.00068 * 3 2 1 6 6 H 1.48497 * 109.47304 * 240.00283 * 3 2 1 7 7 C 1.38951 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99768 * 202.93567 * 7 2 1 9 9 N 1.37091 * 120.00010 * 22.93833 * 7 2 1 10 10 C 1.34781 * 120.00576 * 43.56664 * 9 7 2 11 11 O 1.21294 * 119.99289 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00480 * 180.02562 * 10 9 7 13 13 C 1.50703 * 109.47308 * 179.97438 * 12 10 9 14 14 O 1.21283 * 119.99759 * 359.97438 * 13 12 10 15 15 N 1.34772 * 120.00042 * 179.97438 * 13 12 10 16 16 C 1.46504 * 119.99864 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47078 * 179.97438 * 16 15 13 18 18 F 1.39901 * 109.47103 * 59.99686 * 17 16 15 19 19 F 1.39889 * 109.47211 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47028 * 299.99632 * 17 16 15 21 21 C 1.46508 * 120.00134 * 223.56736 * 9 7 2 22 22 C 1.53002 * 117.49453 * 6.86562 * 21 9 7 23 23 C 1.53004 * 60.00148 * 252.51359 * 22 21 9 24 24 H 0.97001 * 119.99927 * 186.10193 * 1 2 3 25 25 H 1.09005 * 109.47198 * 299.99799 * 12 10 9 26 26 H 1.08998 * 109.47400 * 59.99751 * 12 10 9 27 27 H 0.96997 * 120.00285 * 359.97438 * 15 13 12 28 28 H 1.08999 * 109.46499 * 299.99586 * 16 15 13 29 29 H 1.08994 * 109.47105 * 59.99965 * 16 15 13 30 30 H 1.08999 * 115.55190 * 152.57525 * 21 9 7 31 31 H 1.08996 * 117.49764 * 0.02562 * 22 21 9 32 32 H 1.08999 * 117.49659 * 145.02224 * 22 21 9 33 33 H 1.08998 * 117.50051 * 252.51877 * 23 22 21 34 34 H 1.09000 * 117.51908 * 107.48332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6965 -1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0248 -1.2405 0.3639 9 7 1.4047 -2.3434 -0.4638 10 6 0.6757 -2.3073 -1.5969 11 8 0.5539 -1.2657 -2.2065 12 6 0.0112 -3.5603 -2.1057 13 6 -0.7364 -3.2516 -3.3773 14 8 -0.7306 -2.1248 -3.8258 15 7 -1.4115 -4.2277 -4.0160 16 6 -2.1379 -3.9277 -5.2524 17 6 -2.8117 -5.2002 -5.7697 18 9 -3.7072 -5.6781 -4.8069 19 9 -3.5057 -4.9137 -6.9500 20 9 -1.8386 -6.1725 -6.0247 21 6 1.5514 -3.6014 0.2729 22 6 2.2530 -3.5467 1.6314 23 6 2.9639 -4.1686 0.4278 24 1 -0.4850 -0.8353 0.0893 25 1 0.7688 -4.3185 -2.3042 26 1 -0.6867 -3.9319 -1.3554 27 1 -1.4159 -5.1290 -3.6574 28 1 -2.8957 -3.1699 -5.0537 29 1 -1.4400 -3.5559 -6.0026 30 1 0.7334 -4.3123 0.1567 31 1 2.6050 -2.5748 1.9773 32 1 1.8965 -4.2217 2.4095 33 1 3.0751 -5.2529 0.4139 34 1 3.7840 -3.6062 -0.0187 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272434365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:49 Heat of formation + Delta-G solvation = -207.660888 kcal Electronic energy + Delta-G solvation = -23997.738597 eV Core-core repulsion = 19709.317466 eV Total energy + Delta-G solvation = -4288.421131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.23476 -48.74618 -48.70372 -41.26794 -39.98324 -37.76527 -36.08553 -34.89348 -33.06788 -31.82471 -29.70879 -26.54136 -24.45662 -23.22345 -22.93208 -22.33056 -21.17548 -19.69686 -19.51698 -19.15269 -18.58750 -18.24151 -17.21897 -16.93794 -16.62037 -16.20186 -15.84193 -15.61580 -15.51249 -15.41009 -15.22058 -15.13493 -14.86619 -14.85096 -14.54511 -14.49026 -14.33550 -13.63209 -13.23351 -12.99860 -12.73161 -12.63864 -12.25124 -11.99255 -11.83528 -11.72714 -11.34706 -10.98910 -10.59531 -10.42207 -9.87293 -9.25103 -8.49193 -6.00977 1.36200 1.47746 1.57340 1.60980 1.76077 1.81826 2.18634 2.50049 2.59622 2.92592 2.97365 3.12902 3.17536 3.37543 3.63800 3.97046 4.07718 4.11169 4.23906 4.29069 4.35213 4.41259 4.51465 4.88789 5.01575 5.05298 5.26111 5.47108 5.78182 6.22763 6.30049 6.91405 7.15810 7.25444 7.57747 8.23694 8.75719 Molecular weight = 294.10amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.004049 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.018078 B = 6913.125803 C = 7817.101538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C -0.009 4.009 3 Si 1.110 2.890 4 H -0.290 1.290 5 H -0.255 1.255 6 H -0.290 1.290 7 C -0.430 4.430 8 H 0.065 0.935 9 N -0.451 5.451 10 C 0.443 3.557 11 O -0.559 6.559 12 C -0.142 4.142 13 C 0.520 3.480 14 O -0.538 6.538 15 N -0.720 5.720 16 C 0.078 3.922 17 C 0.464 3.536 18 F -0.179 7.179 19 F -0.175 7.175 20 F -0.177 7.177 21 C 0.041 3.959 22 C -0.175 4.175 23 C -0.178 4.178 24 H 0.254 0.746 25 H 0.150 0.850 26 H 0.140 0.860 27 H 0.421 0.579 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.144 0.856 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 -17.582 -5.623 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.215 4.215 3 Si 0.933 3.067 4 H -0.216 1.216 5 H -0.179 1.179 6 H -0.217 1.217 7 C -0.557 4.557 8 H 0.083 0.917 9 N -0.174 5.174 10 C 0.231 3.769 11 O -0.437 6.437 12 C -0.184 4.184 13 C 0.306 3.694 14 O -0.412 6.412 15 N -0.378 5.378 16 C -0.048 4.048 17 C 0.410 3.590 18 F -0.160 7.160 19 F -0.157 7.157 20 F -0.159 7.159 21 C -0.064 4.064 22 C -0.213 4.213 23 C -0.216 4.216 24 H 0.064 0.936 25 H 0.168 0.832 26 H 0.158 0.842 27 H 0.259 0.741 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.717 -14.608 -6.346 16.355 hybrid contribution -0.030 -1.928 0.085 1.930 sum -3.747 -16.536 -6.261 18.074 Atomic orbital electron populations 1.70691 1.08517 1.29942 1.42102 1.27305 0.96068 1.05503 0.92636 0.83016 0.74317 0.71982 0.77421 1.21588 1.17903 1.21668 1.19811 0.98381 0.88391 1.49117 0.91714 1.43190 1.47272 1.07541 1.19364 1.20669 0.84090 0.90548 0.81616 1.90737 1.61590 1.33855 1.57564 1.21524 1.02188 0.98705 0.95997 1.20486 0.78890 0.84196 0.85798 1.90889 1.60585 1.23015 1.66709 1.45478 1.53207 1.13682 1.25441 1.22428 0.99116 0.93402 0.89855 1.20234 0.77178 0.85758 0.75845 1.93230 1.69522 1.89832 1.63432 1.93221 1.80226 1.93462 1.48768 1.93229 1.62533 1.65947 1.94167 1.22209 0.96838 0.89388 0.97928 1.23109 1.04329 1.02263 0.91600 1.23292 0.95246 1.01158 1.01926 0.93604 0.83221 0.84187 0.74079 0.87113 0.86758 0.83867 0.90853 0.86184 0.85142 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -56.09 12.36 21.66 0.27 -55.82 16 2 C -0.01 -0.52 4.22 84.93 0.36 -0.16 16 3 Si 1.11 53.98 29.98 68.60 2.06 56.04 16 4 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 5 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.43 -23.91 7.76 84.04 0.65 -23.26 16 8 H 0.07 3.55 7.42 -2.91 -0.02 3.53 16 9 N -0.45 -21.67 2.60 -613.11 -1.59 -23.26 16 10 C 0.44 21.86 6.43 87.65 0.56 22.42 16 11 O -0.56 -34.82 12.05 20.37 0.25 -34.58 16 12 C -0.14 -4.50 4.76 29.10 0.14 -4.36 16 13 C 0.52 17.73 7.82 87.66 0.69 18.42 16 14 O -0.54 -25.74 14.18 20.40 0.29 -25.45 16 15 N -0.72 -15.82 5.42 -463.06 -2.51 -18.33 16 16 C 0.08 1.55 5.64 86.38 0.49 2.03 16 17 C 0.46 7.73 3.11 71.98 0.22 7.96 16 18 F -0.18 -3.10 17.18 44.97 0.77 -2.33 16 19 F -0.18 -3.12 17.32 44.97 0.78 -2.35 16 20 F -0.18 -2.98 17.18 44.97 0.77 -2.20 16 21 C 0.04 1.40 5.96 44.99 0.27 1.67 16 22 C -0.18 -5.61 9.80 30.60 0.30 -5.31 16 23 C -0.18 -5.12 10.30 30.60 0.32 -4.80 16 24 H 0.25 16.32 7.42 -92.71 -0.69 15.63 16 25 H 0.15 3.46 8.11 -2.38 -0.02 3.44 16 26 H 0.14 3.45 7.57 -2.39 -0.02 3.43 16 27 H 0.42 6.15 8.36 -92.71 -0.78 5.38 16 28 H 0.11 2.32 8.14 -2.39 -0.02 2.31 16 29 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.14 3.68 6.84 -2.39 -0.02 3.66 16 31 H 0.07 2.88 6.82 -2.39 -0.02 2.87 16 32 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -86.05 308.62 5.54 -80.51 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.47 Total: 13.16 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 3.99 Total: 14.61 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -3.83 Total: -97.41 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: 0.53 Total: -60.03 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 2.32 Total: -6.88 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 2.06 Total: 56.04 kcal Total: -86.05 5.54 -80.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272434365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.150 kcal (2) G-P(sol) polarization free energy of solvation -86.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds