Wall clock time and date at job start Tue Mar 31 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48498 * 109.47254 * 239.99763 * 3 2 1 5 5 H 1.48503 * 109.47275 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47223 * 119.99531 * 3 2 1 7 7 C 1.40055 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99748 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00089 * 354.95242 * 9 7 2 11 11 N 1.34781 * 119.99644 * 174.95820 * 9 7 2 12 12 C 1.46958 * 120.58957 * 185.20514 * 11 9 7 13 13 C 1.53374 * 108.63329 * 235.24736 * 12 11 9 14 14 N 1.46957 * 108.63730 * 310.57586 * 13 12 11 15 15 C 1.34775 * 120.59726 * 235.20500 * 14 13 12 16 16 O 1.21634 * 120.00178 * 5.67913 * 15 14 13 17 17 C 1.47198 * 120.00015 * 185.67489 * 15 14 13 18 18 C 1.44420 * 123.45881 * 31.52159 * 17 15 14 19 19 C 1.32773 * 113.08303 * 180.02562 * 18 17 15 20 20 S 1.75507 * 110.57443 * 0.02562 * 19 18 17 21 21 C 1.36011 * 123.45926 * 211.56288 * 17 15 14 22 22 C 1.46969 * 118.80899 * 55.47648 * 14 13 12 23 23 C 1.46959 * 120.59508 * 5.22802 * 11 9 7 24 24 H 0.97004 * 119.99611 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.61196 * 115.50561 * 12 11 9 26 26 H 1.09004 * 109.61192 * 354.99301 * 12 11 9 27 27 H 1.09000 * 109.60522 * 190.83609 * 13 12 11 28 28 H 1.08996 * 109.74969 * 70.40793 * 13 12 11 29 29 H 1.07999 * 123.46294 * 0.04070 * 18 17 15 30 30 H 1.07994 * 124.71374 * 180.02562 * 19 18 17 31 31 H 1.07993 * 124.59260 * 0.23422 * 21 17 15 32 32 H 1.08999 * 109.60649 * 64.27166 * 22 14 13 33 33 H 1.09006 * 109.61056 * 184.77842 * 22 14 13 34 34 H 1.08998 * 109.61410 * 244.49757 * 23 11 9 35 35 H 1.08999 * 109.61146 * 5.00676 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0616 -2.4825 0.0928 11 7 1.9451 -3.6455 -0.1015 12 6 1.2192 -4.9181 -0.2174 13 6 1.6939 -5.8564 0.8990 14 7 3.1633 -5.8770 0.9022 15 6 3.8333 -7.0420 0.8010 16 8 3.2265 -8.0773 0.6024 17 6 5.2994 -7.0616 0.9307 18 6 6.0374 -6.1411 1.7637 19 6 7.3492 -6.3429 1.7270 20 16 7.7378 -7.6810 0.6599 21 6 6.0983 -7.9479 0.2778 22 6 3.8892 -4.6048 1.0236 23 6 3.4145 -3.6660 -0.0984 24 1 -0.4850 0.8401 -0.0004 25 1 1.4257 -5.3700 -1.1876 26 1 0.1488 -4.7394 -0.1147 27 1 1.3144 -6.8620 0.7177 28 1 1.3310 -5.4966 1.8618 29 1 5.5703 -5.3681 2.3558 30 1 8.0761 -5.7641 2.2773 31 1 5.7424 -8.7138 -0.3952 32 1 3.6791 -4.1551 1.9940 33 1 4.9599 -4.7836 0.9247 34 1 3.7774 -4.0287 -1.0601 35 1 3.7940 -2.6604 0.0829 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274622957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:37 Heat of formation + Delta-G solvation = -12.863852 kcal Electronic energy + Delta-G solvation = -21313.012081 eV Core-core repulsion = 18017.647594 eV Total energy + Delta-G solvation = -3295.364487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26497 -38.08212 -36.94093 -35.85951 -33.04657 -32.50021 -31.09219 -29.98352 -27.48840 -26.35270 -24.92791 -23.07635 -22.35334 -20.62482 -19.64242 -18.67288 -17.98324 -16.66396 -16.19534 -15.89879 -15.53542 -15.05776 -14.83394 -14.52505 -14.13264 -14.02292 -13.48359 -13.30366 -13.00254 -12.85377 -12.56829 -12.51692 -11.93387 -11.63916 -11.41752 -11.28276 -11.12778 -10.99456 -10.90754 -10.73722 -10.30137 -10.12607 -9.78436 -9.22363 -8.94261 -8.69572 -8.54508 -7.67765 -7.26541 -6.27262 -4.73465 0.68184 1.34929 1.69418 1.88864 3.08756 3.10025 3.15606 3.16914 3.28501 4.02038 4.44662 4.49299 4.52050 4.72815 5.02452 5.24334 5.31111 5.32141 5.50306 5.54840 5.61422 5.66902 5.83924 5.92283 5.94680 6.02313 6.06888 6.26791 6.35445 6.51222 6.72523 7.36913 7.47355 7.54008 8.02143 8.23067 8.26053 8.93893 9.32569 10.48879 10.67268 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.004122 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.443177 B = 6791.518339 C = 7851.257063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.575 6.575 11 N -0.643 5.643 12 C 0.108 3.892 13 C 0.099 3.901 14 N -0.596 5.596 15 C 0.576 3.424 16 O -0.548 6.548 17 C -0.153 4.153 18 C -0.113 4.113 19 C -0.232 4.232 20 S 0.172 5.828 21 C -0.186 4.186 22 C 0.074 3.926 23 C 0.110 3.890 24 H 0.270 0.730 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.313 -10.396 2.615 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.458 6.458 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.024 4.024 14 N -0.328 5.328 15 C 0.363 3.637 16 O -0.427 6.427 17 C -0.170 4.170 18 C -0.142 4.142 19 C -0.367 4.367 20 S 0.437 5.563 21 C -0.325 4.325 22 C -0.050 4.050 23 C -0.016 4.016 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.176 0.824 30 H 0.187 0.813 31 H 0.190 0.810 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.447 -11.480 2.127 20.169 hybrid contribution -0.818 1.520 0.412 1.774 sum 15.629 -9.960 2.539 18.706 Atomic orbital electron populations 1.69995 1.07103 1.27554 1.34819 1.25726 0.94619 1.00318 0.92546 0.86444 0.79872 0.81068 0.79469 1.19230 1.20515 1.19200 1.20911 0.93470 0.89190 1.54610 0.90935 1.18287 0.86953 0.82120 0.76128 1.90600 1.14346 1.85923 1.54896 1.48190 1.04413 1.05879 1.79672 1.21506 0.99235 0.85090 0.95878 1.22121 0.78436 1.01476 1.00334 1.47927 1.07388 1.06133 1.71328 1.17667 0.85955 0.83402 0.76653 1.90765 1.69396 1.32362 1.50217 1.20288 0.94465 0.99207 1.03060 1.21523 0.92927 0.99535 1.00261 1.25515 0.99832 1.04240 1.07077 1.83035 1.03953 1.28458 1.40811 1.25499 0.98299 1.03548 1.05107 1.22955 0.97219 0.83947 1.00848 1.21885 0.83299 1.00391 0.96007 0.91921 0.93465 0.88499 0.88898 0.91116 0.82382 0.81255 0.81035 0.90721 0.88165 0.93440 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.33 11.84 55.55 0.66 -21.68 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 3 Si 0.91 19.24 29.56 -169.99 -5.02 14.22 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.55 -14.57 8.86 -35.63 -0.32 -14.89 16 8 H 0.07 1.72 5.67 -52.49 -0.30 1.43 16 9 C 0.56 15.34 7.62 -12.98 -0.10 15.25 16 10 O -0.58 -18.12 14.45 5.20 0.08 -18.05 16 11 N -0.64 -14.12 2.95 -173.88 -0.51 -14.63 16 12 C 0.11 2.12 6.60 -3.60 -0.02 2.10 16 13 C 0.10 1.70 6.60 -3.60 -0.02 1.67 16 14 N -0.60 -9.46 2.94 -173.57 -0.51 -9.97 16 15 C 0.58 9.25 7.52 -12.62 -0.09 9.15 16 16 O -0.55 -10.38 16.34 5.25 0.09 -10.30 16 17 C -0.15 -1.96 5.42 -104.63 -0.57 -2.53 16 18 C -0.11 -1.16 7.88 -39.02 -0.31 -1.47 16 19 C -0.23 -1.92 11.12 28.86 0.32 -1.60 16 20 S 0.17 1.41 23.02 -107.50 -2.48 -1.07 16 21 C -0.19 -2.07 10.65 29.93 0.32 -1.75 16 22 C 0.07 1.05 5.22 -3.37 -0.02 1.04 16 23 C 0.11 1.91 6.50 -3.37 -0.02 1.89 16 24 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.10 2.09 6.99 -51.93 -0.36 1.72 16 27 H 0.09 1.55 6.99 -51.93 -0.36 1.18 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.16 1.47 6.24 -52.49 -0.33 1.14 16 30 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.10 1.17 4.06 -51.93 -0.21 0.95 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 1.85 5.34 -51.93 -0.28 1.57 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -34.82 304.18 -7.56 -42.38 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.51 Total: 3.39 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -0.93 Total: 11.12 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.37 Total: -46.28 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: 0.16 Total: -28.35 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.48 Total: -1.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.82 -7.56 -42.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274622957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.516 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds