Wall clock time and date at job start Tue Mar 31 2020 03:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47130 * 56.72416 * 3 2 1 5 5 C 1.37105 * 120.00120 * 263.96854 * 4 3 2 6 6 H 1.08001 * 120.00210 * 199.71476 * 5 4 3 7 7 C 1.38950 * 119.99591 * 19.70994 * 5 4 3 8 8 N 1.31408 * 120.00264 * 21.76997 * 7 5 4 9 9 Si 1.86807 * 119.99739 * 201.76702 * 7 5 4 10 10 H 1.48502 * 109.46994 * 60.00045 * 9 7 5 11 11 H 1.48495 * 109.46955 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46982 * 300.00138 * 9 7 5 13 13 C 1.34775 * 120.00018 * 83.97290 * 4 3 2 14 14 O 1.21296 * 119.99812 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00258 * 359.97438 * 13 4 3 16 16 H 1.08998 * 109.46599 * 325.00277 * 15 13 4 17 17 C 1.52996 * 109.47083 * 84.99896 * 15 13 4 18 18 S 1.80998 * 109.47157 * 205.00249 * 15 13 4 19 19 C 1.76205 * 99.99683 * 174.99927 * 18 15 13 20 20 N 1.31281 * 126.48600 * 0.02562 * 19 18 15 21 21 N 1.28522 * 109.85748 * 179.97438 * 20 19 18 22 22 C 1.30299 * 110.07962 * 359.72295 * 21 20 19 23 23 N 1.36534 * 126.48250 * 180.02562 * 19 18 15 24 24 C 1.46506 * 127.14245 * 0.02562 * 23 19 18 25 25 H 4.40639 * 5.51412 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47409 * 296.72334 * 3 2 1 27 27 H 1.08999 * 109.47047 * 176.72490 * 3 2 1 28 28 H 0.96999 * 119.99931 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47816 * 300.00439 * 17 15 13 30 30 H 1.09005 * 109.46909 * 60.00307 * 17 15 13 31 31 H 1.09001 * 109.47521 * 180.02562 * 17 15 13 32 32 H 1.07996 * 126.34692 * 180.30903 * 22 21 20 33 33 H 1.09003 * 109.46708 * 90.00777 * 24 23 19 34 34 H 1.08994 * 109.47087 * 330.00461 * 24 23 19 35 35 H 1.08997 * 109.46877 * 210.00199 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.7570 -1.1547 5 6 3.4814 -2.0758 -1.0125 6 1 4.1243 -2.5468 -1.7413 7 6 3.0056 -2.8063 0.0695 8 7 1.9247 -2.4120 0.7043 9 14 3.9026 -4.3491 0.6217 10 1 5.2939 -4.0015 1.0073 11 1 3.1984 -4.9406 1.7875 12 1 3.9283 -5.3318 -0.4914 13 6 3.2434 -0.1575 -2.3569 14 8 3.6476 -0.7849 -3.3131 15 6 2.8619 1.2920 -2.5135 16 1 2.0159 1.5171 -1.8641 17 6 4.0496 2.1764 -2.1288 18 16 2.4034 1.6126 -4.2348 19 6 1.8727 3.2877 -4.1031 20 7 1.8535 4.0169 -3.0116 21 7 1.4079 5.1923 -3.2796 22 6 1.1241 5.2846 -4.5479 23 7 1.4036 4.0728 -5.1169 24 6 1.2400 3.6971 -6.5234 25 1 -1.0499 0.0000 -0.0003 26 1 3.0095 -0.4613 0.9179 27 1 3.0088 1.0268 -0.0587 28 1 1.5925 -2.9222 1.4594 29 1 4.3258 1.9833 -1.0922 30 1 4.8956 1.9512 -2.7782 31 1 3.7736 3.2248 -2.2416 32 1 0.7372 6.1559 -5.0555 33 1 0.2421 3.2858 -6.6759 34 1 1.9862 2.9482 -6.7886 35 1 1.3698 4.5780 -7.1522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281479514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:03 Heat of formation + Delta-G solvation = 124.333906 kcal Electronic energy + Delta-G solvation = -21195.485200 eV Core-core repulsion = 17938.362805 eV Total energy + Delta-G solvation = -3257.122394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.76937 -38.87616 -35.28259 -35.01026 -32.99760 -31.80377 -31.19271 -30.41469 -27.73928 -26.49223 -25.27248 -23.42968 -22.65811 -22.29993 -19.39324 -18.02643 -17.81946 -16.74626 -16.41861 -16.23444 -16.08783 -15.24487 -14.77397 -14.32874 -14.20893 -13.73100 -13.59148 -13.27783 -13.05251 -12.95710 -12.35315 -11.89042 -11.80709 -11.64962 -11.51846 -11.26487 -11.01034 -10.61537 -10.57970 -10.38360 -10.30870 -9.96913 -9.90002 -9.37034 -9.28215 -8.93156 -8.56659 -7.94477 -7.43420 -6.39053 -3.94223 1.23975 1.67381 2.29005 2.61884 2.87062 3.14313 3.22900 3.25830 3.62836 3.83191 4.04545 4.13955 4.40325 4.52024 4.74825 4.84103 4.97189 5.12702 5.18921 5.36970 5.45183 5.51384 5.59817 5.69428 5.92435 6.04492 6.20209 6.25834 6.54594 6.66551 6.67090 7.00941 7.50479 7.92700 8.31649 8.67209 8.81620 9.01537 9.24357 9.76079 10.60935 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.004471 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.898914 B = 6261.628052 C = 6694.842522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.119 4.119 3 C 0.227 3.773 4 N -0.423 5.423 5 C -0.320 4.320 6 H 0.106 0.894 7 C 0.036 3.964 8 N -0.854 5.854 9 Si 0.923 3.077 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.466 3.534 14 O -0.572 6.572 15 C -0.093 4.093 16 H 0.115 0.885 17 C -0.142 4.142 18 S 0.062 5.938 19 C 0.154 3.846 20 N -0.294 5.294 21 N -0.290 5.290 22 C 0.146 3.854 23 N -0.472 5.472 24 C 0.074 3.926 25 H 0.199 0.801 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.271 0.729 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.219 0.781 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 12.029 -8.746 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.121 4.121 3 C 0.104 3.896 4 N -0.141 5.141 5 C -0.447 4.447 6 H 0.123 0.877 7 C -0.170 4.170 8 N -0.491 5.491 9 Si 0.749 3.251 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.252 3.748 14 O -0.457 6.457 15 C -0.226 4.226 16 H 0.133 0.867 17 C -0.202 4.202 18 S 0.290 5.710 19 C -0.220 4.220 20 N -0.139 5.139 21 N -0.129 5.129 22 C -0.144 4.144 23 N -0.167 5.167 24 C -0.069 4.069 25 H 0.216 0.784 26 H 0.127 0.873 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.556 11.291 -8.536 14.240 hybrid contribution -0.462 -0.245 0.127 0.538 sum -2.018 11.046 -8.409 14.029 Atomic orbital electron populations 1.24261 0.95363 1.05195 1.02126 1.23025 0.94260 0.96143 0.98637 1.18360 0.84541 0.94377 0.92354 1.43536 1.54953 1.10391 1.05196 1.19625 1.28787 0.85478 1.10846 0.87651 1.25336 0.94874 0.99257 0.97545 1.70095 1.17550 1.40254 1.21179 0.86051 0.79569 0.81170 0.78282 1.19741 1.20970 1.19756 1.19066 0.85573 0.86275 0.83857 1.90555 1.51402 1.65650 1.38068 1.23563 1.03955 0.99673 0.95385 0.86723 1.22041 0.95947 0.99682 1.02481 1.85949 1.77504 0.94214 1.13325 1.27533 1.04634 1.02393 0.87471 1.74694 1.19628 0.98562 1.20970 1.73907 1.14406 1.12599 1.11964 1.26615 1.05600 0.90231 0.91948 1.46504 1.49326 1.10801 1.10044 1.22130 1.04401 1.03200 0.77206 0.78357 0.87330 0.91398 0.91881 0.91037 0.91510 0.90281 0.76475 0.89744 0.88759 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.35 19.25 29.55 0.57 -4.78 16 2 C -0.12 -2.72 10.40 -37.13 -0.39 -3.11 16 3 C 0.23 5.04 4.79 -6.83 -0.03 5.00 16 4 N -0.42 -10.55 2.60 -117.93 -0.31 -10.86 16 5 C -0.32 -8.61 9.28 -14.93 -0.14 -8.75 16 6 H 0.11 2.96 7.42 -52.49 -0.39 2.57 16 7 C 0.04 0.91 4.83 -17.47 -0.08 0.82 16 8 N -0.85 -22.11 9.59 55.50 0.53 -21.57 16 9 Si 0.92 20.03 29.61 -169.99 -5.03 15.00 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.47 11.21 6.69 -10.99 -0.07 11.14 16 14 O -0.57 -15.39 15.80 5.54 0.09 -15.30 16 15 C -0.09 -1.83 1.86 -27.88 -0.05 -1.89 16 16 H 0.11 2.34 6.19 -51.92 -0.32 2.02 16 17 C -0.14 -2.46 8.80 37.16 0.33 -2.13 16 18 S 0.06 1.08 20.56 -107.50 -2.21 -1.13 16 19 C 0.15 2.48 7.75 -88.35 -0.69 1.79 16 20 N -0.29 -5.24 9.74 30.68 0.30 -4.94 16 21 N -0.29 -4.67 12.17 29.90 0.36 -4.31 16 22 C 0.15 1.70 12.80 -88.95 -1.14 0.56 16 23 N -0.47 -5.69 3.21 -125.58 -0.40 -6.10 16 24 C 0.07 0.53 11.09 59.85 0.66 1.19 16 25 H 0.20 3.50 7.80 -54.10 -0.42 3.07 16 26 H 0.11 2.49 6.60 -51.93 -0.34 2.15 16 27 H 0.07 1.30 5.42 -51.93 -0.28 1.02 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.07 1.17 6.70 -51.93 -0.35 0.82 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.34 5.91 -51.93 -0.31 1.03 16 32 H 0.22 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -33.64 316.84 -6.57 -40.21 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.65 Total: 4.37 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.03 Total: -0.15 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.49 Total: -47.78 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.09 Total: -15.30 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.21 Total: -1.13 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.64 -6.57 -40.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281479514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.544 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds