Wall clock time and date at job start Tue Mar 31 2020 03:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99751 * 2 1 4 4 H 1.48502 * 109.46891 * 239.99570 * 3 2 1 5 5 H 1.48498 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47430 * 119.99902 * 3 2 1 7 7 C 1.37875 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00192 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46677 * 299.99691 * 9 7 2 11 11 O 1.42896 * 109.47410 * 59.99222 * 9 7 2 12 12 C 1.53001 * 109.47181 * 180.02562 * 9 7 2 13 13 N 1.46498 * 109.46861 * 180.02562 * 12 9 7 14 14 N 1.40280 * 126.57187 * 270.28152 * 13 12 9 15 15 C 1.30164 * 107.74616 * 180.16755 * 14 13 12 16 16 C 1.47885 * 125.46151 * 179.85422 * 15 14 13 17 17 C 1.39546 * 120.11276 * 179.71694 * 16 15 14 18 18 C 1.37925 * 119.88203 * 180.02562 * 17 16 15 19 19 C 1.38578 * 120.11799 * 359.97438 * 18 17 16 20 20 F 1.35093 * 119.88980 * 179.97438 * 19 18 17 21 21 C 1.38587 * 120.22853 * 0.02562 * 19 18 17 22 22 C 1.37915 * 120.11893 * 359.97438 * 21 19 18 23 23 O 1.35080 * 109.07335 * 359.59323 * 15 14 13 24 24 C 1.34330 * 108.86109 * 0.26082 * 23 15 14 25 25 O 1.21694 * 126.26501 * 179.97438 * 24 23 15 26 26 H 0.97000 * 119.99975 * 0.02562 * 1 2 3 27 27 H 0.96706 * 113.99954 * 60.00408 * 11 9 7 28 28 H 1.08997 * 109.47193 * 59.99359 * 12 9 7 29 29 H 1.09001 * 109.46622 * 299.99298 * 12 9 7 30 30 H 1.08000 * 120.06038 * 0.02562 * 17 16 15 31 31 H 1.07999 * 119.93728 * 179.72197 * 18 17 16 32 32 H 1.08005 * 119.94443 * 179.97438 * 21 19 18 33 33 H 1.08002 * 120.06346 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8904 11 8 0.4299 -2.5751 -1.1664 12 6 2.2454 -3.6621 0.0018 13 7 1.5129 -4.9308 0.0012 14 7 1.0889 -5.6517 1.1274 15 6 0.4783 -6.7215 0.7069 16 6 -0.1229 -7.7613 1.5697 17 6 -0.7584 -8.8642 0.9977 18 6 -1.3180 -9.8309 1.8068 19 6 -1.2495 -9.7086 3.1855 20 9 -1.7996 -10.6579 3.9737 21 6 -0.6196 -8.6153 3.7586 22 6 -0.0568 -7.6430 2.9586 23 8 0.4768 -6.7268 -0.6439 24 6 1.1118 -5.6276 -1.0831 25 8 1.2929 -5.3171 -2.2458 26 1 -0.4850 0.8400 -0.0004 27 1 0.9223 -2.5300 -1.9975 28 1 2.8714 -3.6038 0.8922 29 1 2.8726 -3.6047 -0.8878 30 1 -0.8120 -8.9606 -0.0767 31 1 -1.8140 -10.6825 1.3651 32 1 -0.5692 -8.5245 4.8336 33 1 0.4343 -6.7916 3.4062 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287548274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:40 Heat of formation + Delta-G solvation = -70.959581 kcal Electronic energy + Delta-G solvation = -22534.662191 eV Core-core repulsion = 18670.565309 eV Total energy + Delta-G solvation = -3864.096883 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.28918 -43.08121 -39.34220 -37.60658 -36.60187 -35.09205 -32.68228 -32.21848 -31.62407 -30.52413 -28.33127 -25.65255 -24.18814 -23.56848 -22.47605 -21.71958 -20.83864 -18.32992 -17.81623 -17.39239 -16.99088 -16.67163 -16.58276 -15.96179 -15.67870 -15.04169 -14.71887 -14.64393 -14.38252 -13.98988 -13.73908 -13.53423 -13.43267 -13.14937 -12.90891 -12.45137 -11.92110 -11.90125 -11.40561 -11.33939 -11.11704 -10.99331 -10.91611 -10.49616 -10.20851 -9.75687 -9.56645 -9.20001 -8.69848 -8.56829 -7.99651 -6.11866 -4.33338 0.24024 0.82434 1.91802 1.96803 2.61129 2.65287 3.24075 3.25295 3.29801 3.31031 3.81374 4.13203 4.30677 4.43308 4.45662 4.77622 4.83417 4.98566 5.15977 5.39483 5.49216 5.54516 5.68282 5.75764 5.82678 5.91369 6.01898 6.14774 6.25118 6.37245 6.52536 7.47918 7.65693 7.71670 7.88902 7.99188 8.68360 9.27148 9.44514 10.92380 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.003325 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.502458 B = 8419.141236 C = 9041.802829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.082 3.918 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.578 4.578 8 H 0.061 0.939 9 C 0.217 3.783 10 H 0.064 0.936 11 O -0.561 6.561 12 C 0.119 3.881 13 N -0.429 5.429 14 N -0.241 5.241 15 C 0.258 3.742 16 C -0.029 4.029 17 C -0.050 4.050 18 C -0.155 4.155 19 C 0.119 3.881 20 F -0.135 7.135 21 C -0.154 4.154 22 C -0.040 4.040 23 O -0.275 6.275 24 C 0.607 3.393 25 O -0.481 6.481 26 H 0.264 0.736 27 H 0.351 0.649 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 -18.774 6.687 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.125 4.125 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.616 4.616 8 H 0.079 0.921 9 C 0.158 3.842 10 H 0.082 0.918 11 O -0.363 6.363 12 C 0.002 3.998 13 N -0.260 5.260 14 N -0.071 5.071 15 C 0.035 3.965 16 C -0.031 4.031 17 C -0.070 4.070 18 C -0.174 4.174 19 C 0.099 3.901 20 F -0.114 7.114 21 C -0.172 4.172 22 C -0.060 4.060 23 O -0.173 6.173 24 C 0.359 3.641 25 O -0.363 6.363 26 H 0.073 0.927 27 H 0.195 0.805 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.774 -18.082 7.025 19.414 hybrid contribution 0.622 0.615 -0.856 1.223 sum -0.152 -17.468 6.169 18.526 Atomic orbital electron populations 1.70074 1.06058 1.26920 1.45862 1.25021 0.94741 0.99313 0.93447 0.86615 0.79624 0.82633 0.78807 1.19979 1.21112 1.19988 1.21394 0.93222 0.90701 1.56326 0.92114 1.19823 0.88408 0.88825 0.87114 0.91818 1.86576 1.38267 1.96106 1.15391 1.23108 0.95336 0.77499 1.03891 1.50378 1.52087 1.22667 1.00845 1.77319 1.14307 1.03165 1.12328 1.23454 0.98797 0.94993 0.79289 1.17296 1.02273 0.92482 0.91092 1.21140 0.93620 0.91146 1.01139 1.21064 1.03365 1.01471 0.91465 1.17934 0.96134 0.87431 0.88644 1.91526 1.83130 1.62605 1.74106 1.21091 1.00782 0.93776 1.01578 1.21088 0.95663 0.98392 0.90823 1.85084 1.67195 1.43474 1.21505 1.19201 0.79512 0.78496 0.86871 1.91166 1.60583 1.69821 1.14682 0.92668 0.80477 0.88539 0.88832 0.83567 0.83727 0.83553 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.91 12.84 55.43 0.71 -24.20 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.58 -15.21 8.76 -34.44 -0.30 -15.51 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.22 5.38 3.09 -27.88 -0.09 5.30 16 10 H 0.06 1.76 8.14 -51.93 -0.42 1.33 16 11 O -0.56 -14.82 12.28 -35.23 -0.43 -15.25 16 12 C 0.12 2.39 6.02 -4.04 -0.02 2.36 16 13 N -0.43 -8.33 3.55 -65.27 -0.23 -8.57 16 14 N -0.24 -4.12 12.16 31.96 0.39 -3.74 16 15 C 0.26 3.86 7.94 -14.31 -0.11 3.75 16 16 C -0.03 -0.32 5.87 -104.97 -0.62 -0.94 16 17 C -0.05 -0.45 9.71 -39.21 -0.38 -0.83 16 18 C -0.15 -1.19 10.01 -39.57 -0.40 -1.59 16 19 C 0.12 0.99 7.30 -39.33 -0.29 0.71 16 20 F -0.14 -1.20 17.26 2.25 0.04 -1.17 16 21 C -0.15 -1.22 10.01 -39.57 -0.40 -1.61 16 22 C -0.04 -0.37 9.68 -39.21 -0.38 -0.75 16 23 O -0.28 -4.69 10.43 -20.75 -0.22 -4.91 16 24 C 0.61 12.18 8.90 54.15 0.48 12.66 16 25 O -0.48 -10.72 17.91 -19.00 -0.34 -11.06 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.35 8.61 9.04 45.56 0.41 9.02 16 28 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 29 H 0.09 1.80 8.12 -51.93 -0.42 1.37 16 30 H 0.15 1.17 7.89 -52.49 -0.41 0.76 16 31 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.15 1.36 7.82 -52.49 -0.41 0.95 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -32.01 311.30 -5.07 -37.08 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -2.07 Total: 5.86 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.60 Total: 5.68 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.87 Total: -36.50 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.99 Total: -31.22 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.01 -5.07 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287548274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.876 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds