Wall clock time and date at job start Tue Mar 31 2020 03:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29318 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48494 * 109.47140 * 269.99946 * 3 2 1 5 5 H 1.48502 * 109.46948 * 30.00122 * 3 2 1 6 6 H 1.48501 * 109.46919 * 149.99831 * 3 2 1 7 7 C 1.46785 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99518 * 180.02562 * 7 2 1 9 9 N 1.33303 * 120.00712 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00691 * 179.97438 * 9 7 2 11 11 O 1.21517 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.47427 * 120.00693 * 180.02562 * 10 9 7 13 13 C 1.39821 * 120.10361 * 6.66785 * 12 10 9 14 14 C 1.38194 * 119.94973 * 179.97438 * 13 12 10 15 15 C 1.39355 * 119.96905 * 359.91726 * 14 13 12 16 16 C 1.39012 * 120.05610 * 359.97438 * 15 14 13 17 17 C 1.37711 * 120.28005 * 0.21892 * 16 15 14 18 18 N 1.48013 * 120.02267 * 179.83828 * 17 16 15 19 19 O 1.31701 * 119.99861 * 51.35087 * 18 17 16 20 20 O 1.31698 * 120.00067 * 231.34966 * 18 17 16 21 21 O 1.35944 * 120.70419 * 180.25658 * 15 14 13 22 22 C 1.43139 * 116.75270 * 342.76500 * 21 15 14 23 23 C 1.53474 * 108.27300 * 46.29654 * 22 21 15 24 24 O 1.36146 * 119.27590 * 179.86252 * 14 13 12 25 25 H 0.96998 * 120.00244 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99377 * 0.02562 * 9 7 2 27 27 H 1.08001 * 120.02500 * 359.93516 * 13 12 10 28 28 H 1.08000 * 119.86090 * 179.88168 * 16 15 14 29 29 H 1.09000 * 109.69533 * 286.60103 * 22 21 15 30 30 H 1.09009 * 109.71174 * 165.99562 * 22 21 15 31 31 H 1.09000 * 109.71239 * 180.47765 * 23 22 21 32 32 H 1.08999 * 109.71296 * 59.84168 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 2.4747 2.0464 -1.4000 5 1 1.4246 2.6526 0.7001 6 1 3.5247 1.4401 0.7001 7 6 2.0270 -1.2712 0.0006 8 1 3.1071 -1.2712 0.0010 9 7 1.3606 -2.4257 0.0016 10 6 2.0344 -3.5929 0.0016 11 8 3.2496 -3.5929 0.0011 12 6 1.2973 -4.8697 0.0022 13 6 -0.0938 -4.8765 -0.1377 14 6 -0.7815 -6.0752 -0.1373 15 6 -0.0875 -7.2757 0.0008 16 6 1.2958 -7.2685 0.1376 17 6 1.9870 -6.0774 0.1420 18 7 3.4595 -6.0762 0.2916 19 8 4.2012 -6.8359 -0.4877 20 8 4.0281 -5.3155 1.2040 21 8 -0.7483 -8.4637 -0.0020 22 6 -2.1599 -8.4164 0.2306 23 6 -2.7543 -7.3027 -0.6421 24 8 -2.1362 -6.0656 -0.2716 25 1 -0.4850 0.8400 0.0004 26 1 0.3905 -2.4257 0.0016 27 1 -0.6307 -3.9455 -0.2454 28 1 1.8303 -8.2007 0.2464 29 1 -2.3520 -8.2017 1.2819 30 1 -2.6090 -9.3728 -0.0376 31 1 -3.8299 -7.2404 -0.4766 32 1 -2.5551 -7.5131 -1.6929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299709534.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:24 Heat of formation + Delta-G solvation = -59.624111 kcal Electronic energy + Delta-G solvation = -23393.917676 eV Core-core repulsion = 19517.939547 eV Total energy + Delta-G solvation = -3875.978129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.078 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.66994 -40.97269 -39.67997 -38.53774 -38.22852 -36.31787 -35.24632 -34.11171 -32.69737 -32.42455 -30.17201 -28.14220 -26.72937 -25.59948 -24.48762 -22.87158 -21.40254 -20.77199 -20.05084 -19.37061 -19.10436 -18.38562 -18.30705 -17.31479 -16.89311 -16.55523 -16.29667 -16.09946 -15.92351 -15.74908 -15.50254 -15.31694 -15.03833 -14.48485 -13.92758 -13.90098 -13.74424 -13.09042 -12.61850 -12.58755 -12.37119 -12.15837 -12.11267 -12.09879 -11.79308 -11.74765 -11.55335 -10.54741 -10.46706 -10.27218 -9.60666 -8.96498 -5.88165 -1.60276 -0.57553 -0.27565 0.19560 1.27404 1.40011 1.50386 1.57192 1.81882 1.97033 2.17047 2.30874 2.74995 2.88024 3.00861 3.37041 3.48466 3.63097 3.81344 3.94279 4.02851 4.12519 4.26800 4.39416 4.46685 4.61484 4.66814 4.72465 4.89379 4.98304 5.58357 5.60549 5.72676 6.02686 6.17131 6.84843 7.14904 7.94781 8.16486 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.005259 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.193791 B = 5322.838420 C = 6958.018036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.015 3.985 3 Si 1.007 2.993 4 H -0.261 1.261 5 H -0.254 1.254 6 H -0.270 1.270 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.485 5.485 10 C 0.386 3.614 11 O -0.629 6.629 12 C -0.047 4.047 13 C -0.106 4.106 14 C 0.117 3.883 15 C 0.065 3.935 16 C -0.054 4.054 17 C 0.004 3.996 18 N -0.005 5.005 19 O -0.222 6.222 20 O -0.144 6.144 21 O -0.302 6.302 22 C 0.011 3.989 23 C 0.007 3.993 24 O -0.302 6.302 25 H 0.307 0.693 26 H 0.399 0.601 27 H 0.163 0.837 28 H 0.171 0.829 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.273 -11.763 -0.488 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.200 4.200 3 Si 0.827 3.173 4 H -0.186 1.186 5 H -0.177 1.177 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.111 0.889 9 N -0.114 5.114 10 C 0.180 3.820 11 O -0.521 6.521 12 C -0.053 4.053 13 C -0.127 4.127 14 C 0.070 3.930 15 C 0.017 3.983 16 C -0.074 4.074 17 C -0.083 4.083 18 N 0.473 4.527 19 O -0.405 6.405 20 O -0.349 6.349 21 O -0.216 6.216 22 C -0.063 4.063 23 C -0.067 4.067 24 O -0.215 6.215 25 H 0.119 0.881 26 H 0.235 0.765 27 H 0.180 0.820 28 H 0.188 0.812 29 H 0.108 0.892 30 H 0.186 0.814 31 H 0.185 0.815 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.435 -11.716 -0.642 19.388 hybrid contribution 0.522 0.711 0.042 0.883 sum -14.912 -11.005 -0.600 18.543 Atomic orbital electron populations 1.68617 1.08760 1.32928 1.36319 1.27909 0.96031 1.02827 0.93224 0.84744 0.78419 0.74504 0.79676 1.18573 1.17718 1.19426 1.21028 0.93699 0.83249 1.49977 0.88858 1.40969 1.09802 1.05016 1.55583 1.17633 0.87663 0.83739 0.93001 1.90719 1.13980 1.86559 1.60814 1.19559 0.93534 0.91955 1.00259 1.20457 0.89857 0.98653 1.03714 1.18736 0.84734 0.92175 0.97389 1.18172 0.90422 0.85585 1.04109 1.19805 0.92190 0.96185 0.99229 1.19658 0.76363 0.95607 1.16714 1.50106 1.04686 0.98280 0.99601 1.96135 1.63751 1.39520 1.41086 1.96255 1.77319 1.35283 1.26015 1.86294 1.23942 1.24243 1.87160 1.24215 0.76785 1.03868 1.01406 1.24277 1.01119 0.81074 1.00204 1.86415 1.14212 1.37108 1.83798 0.88079 0.76539 0.81968 0.81179 0.89184 0.81374 0.81490 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -38.13 13.09 23.26 0.30 -37.83 16 2 C 0.02 0.71 5.69 87.30 0.50 1.20 16 3 Si 1.01 37.40 29.65 68.60 2.03 39.43 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.35 -18.87 9.92 86.71 0.86 -18.01 16 8 H 0.09 5.56 7.19 -2.91 -0.02 5.54 16 9 N -0.48 -24.90 5.12 -306.04 -1.57 -26.46 16 10 C 0.39 20.64 7.56 86.67 0.65 21.30 16 11 O -0.63 -39.31 12.41 19.66 0.24 -39.06 16 12 C -0.05 -2.04 5.87 -20.10 -0.12 -2.16 16 13 C -0.11 -3.60 9.43 22.64 0.21 -3.39 16 14 C 0.12 3.22 6.48 22.53 0.15 3.37 16 15 C 0.06 1.74 6.51 22.72 0.15 1.88 16 16 C -0.05 -1.75 9.76 22.33 0.22 -1.53 16 17 C 0.00 0.16 6.38 36.62 0.23 0.39 16 18 N -0.01 -0.27 4.02 -45.88 -0.18 -0.46 16 19 O -0.22 -10.85 19.89 3.51 0.07 -10.78 16 20 O -0.14 -7.99 16.88 11.57 0.20 -7.80 16 21 O -0.30 -6.03 10.40 -80.75 -0.84 -6.87 16 22 C 0.01 0.11 7.25 72.14 0.52 0.63 16 23 C 0.01 0.07 7.26 72.14 0.52 0.60 16 24 O -0.30 -6.42 10.42 -83.05 -0.86 -7.29 16 25 H 0.31 12.42 8.26 -92.71 -0.77 11.66 16 26 H 0.40 18.44 6.04 -92.70 -0.56 17.88 16 27 H 0.16 5.22 6.45 -2.91 -0.02 5.20 16 28 H 0.17 4.80 8.06 -2.91 -0.02 4.77 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.17 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.17 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -75.69 293.88 3.95 -71.74 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.65 Total: 21.09 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 3.90 Total: 4.29 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -1.45 Total: -64.75 kcal Atomic # 8 Polarization: -70.60 SS G_CDS: -1.20 Total: -71.80 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -75.69 3.95 -71.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299709534.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.118 kcal (2) G-P(sol) polarization free energy of solvation -75.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds