Wall clock time and date at job start Tue Mar 31 2020 03:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00350 * 2 1 4 4 H 1.48501 * 109.47229 * 240.00194 * 3 2 1 5 5 H 1.48499 * 109.46898 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47014 * 119.99868 * 3 2 1 7 7 C 1.37878 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00283 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47289 * 179.97438 * 9 7 2 11 11 S 1.81391 * 109.47294 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54525 * 68.37259 * 11 10 9 13 13 O 1.42107 * 110.54349 * 291.62388 * 11 10 9 14 14 N 1.65603 * 104.45164 * 180.02562 * 11 10 9 15 15 C 1.47018 * 125.64759 * 84.49076 * 14 11 10 16 16 C 1.54321 * 107.27332 * 178.90345 * 15 14 11 17 17 H 1.09001 * 110.72520 * 219.44444 * 16 15 14 18 18 F 1.39893 * 110.71943 * 96.16909 * 16 15 14 19 19 C 1.55166 * 102.94101 * 337.80936 * 16 15 14 20 20 C 1.47467 * 125.62893 * 264.41025 * 14 11 10 21 21 H 1.08999 * 110.34735 * 85.32376 * 20 14 11 22 22 C 1.50694 * 110.40402 * 322.98692 * 20 14 11 23 23 N 1.29040 * 120.00158 * 119.05975 * 22 20 14 24 24 O 1.34923 * 120.00333 * 299.05879 * 22 20 14 25 25 H 0.96999 * 119.99532 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47294 * 60.00051 * 9 7 2 27 27 H 1.08992 * 109.47084 * 300.00007 * 9 7 2 28 28 H 1.08996 * 109.46673 * 59.99688 * 10 9 7 29 29 H 1.09003 * 109.47063 * 300.00548 * 10 9 7 30 30 H 1.09003 * 109.88511 * 59.48962 * 15 14 11 31 31 H 1.09001 * 109.88912 * 298.32667 * 15 14 11 32 32 H 1.08998 * 111.00056 * 153.57471 * 19 16 15 33 33 H 1.09004 * 111.00023 * 277.38911 * 19 16 15 34 34 H 0.97003 * 120.00292 * 179.97438 * 23 22 20 35 35 H 0.96701 * 114.00322 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 16 1.3382 -5.2330 -0.0026 12 8 0.6636 -5.4188 -1.2394 13 8 0.6647 -5.4206 1.2346 14 7 2.5203 -6.3928 -0.0032 15 6 3.2123 -6.9116 1.1856 16 6 4.2052 -7.9902 0.7037 17 1 4.2258 -8.8323 1.3955 18 9 5.4849 -7.4485 0.5430 19 6 3.6147 -8.4191 -0.6656 20 6 3.0517 -7.0771 -1.1965 21 1 3.8465 -6.4853 -1.6504 22 6 1.9492 -7.3284 -2.1926 23 7 2.0126 -6.8058 -3.3708 24 8 0.8957 -8.0998 -1.8527 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8725 -3.6048 0.8877 29 1 2.8712 -3.6040 -0.8922 30 1 2.4897 -7.3531 1.8720 31 1 3.7527 -6.1053 1.6815 32 1 4.3938 -8.8036 -1.3238 33 1 2.8189 -9.1525 -0.5354 34 1 1.3031 -6.9679 -4.0121 35 1 0.2407 -8.2035 -2.5566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330527457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:38 Heat of formation + Delta-G solvation = -143.447758 kcal Electronic energy + Delta-G solvation = -22634.303762 eV Core-core repulsion = 18902.507507 eV Total energy + Delta-G solvation = -3731.796254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.87594 -39.56952 -37.54178 -36.65007 -35.51109 -33.90210 -33.00342 -31.17891 -30.85875 -29.46429 -25.61404 -23.89981 -22.02970 -21.54927 -21.16904 -19.00494 -18.06487 -17.37931 -17.01380 -16.56399 -15.88353 -15.53363 -15.22198 -15.18395 -15.11855 -14.56591 -14.42904 -14.26824 -13.66905 -13.33997 -13.00521 -12.82732 -12.50130 -12.05275 -11.78153 -11.69405 -11.64117 -11.54651 -11.17493 -11.11492 -11.05977 -10.98333 -10.45889 -10.38834 -9.83257 -9.79801 -9.59557 -9.42609 -8.94825 -8.50145 -6.12568 -4.18201 0.60349 2.28069 2.93600 3.28371 3.32131 3.32762 3.35019 3.87554 4.00557 4.22350 4.26596 4.37363 4.47200 4.61853 4.72100 4.95366 5.07521 5.22622 5.36790 5.39621 5.56069 5.59764 5.62723 5.82693 5.90710 6.09994 6.22405 6.46749 6.78640 7.27465 7.33555 7.80438 8.16739 8.35553 8.84851 9.46588 10.98522 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.004795 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.102042 B = 5837.605937 C = 6340.619497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.586 4.586 11 S 2.603 3.397 12 O -0.951 6.951 13 O -0.958 6.958 14 N -1.010 6.010 15 C 0.094 3.906 16 C 0.084 3.916 17 H 0.111 0.889 18 F -0.201 7.201 19 C -0.147 4.147 20 C 0.221 3.779 21 H 0.119 0.881 22 C 0.364 3.636 23 N -0.723 5.723 24 O -0.522 6.522 25 H 0.266 0.734 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.342 0.658 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.429 -19.327 -0.676 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.720 4.720 11 S 2.703 3.297 12 O -0.941 6.941 13 O -0.949 6.949 14 N -0.846 5.846 15 C -0.032 4.032 16 C 0.046 3.954 17 H 0.129 0.871 18 F -0.182 7.182 19 C -0.187 4.187 20 C 0.114 3.886 21 H 0.137 0.863 22 C 0.132 3.868 23 N -0.369 5.369 24 O -0.316 6.316 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.166 -18.902 -0.435 20.219 hybrid contribution -0.296 0.872 -0.596 1.097 sum 6.870 -18.030 -1.032 19.322 Atomic orbital electron populations 1.69948 1.06146 1.27336 1.49527 1.25067 0.94982 0.99565 0.94829 0.86507 0.79487 0.82395 0.78772 1.20010 1.21058 1.20030 1.20963 0.93088 0.89666 1.52265 0.91995 1.18958 0.92646 0.90538 0.98775 1.30475 1.13770 1.17455 1.10311 1.05515 0.74096 0.75917 0.74168 1.93507 1.70664 1.84785 1.45109 1.93539 1.70690 1.85153 1.45489 1.59122 1.58506 1.55457 1.11540 1.22371 0.95287 0.97579 0.87973 1.22515 0.78583 0.96074 0.98215 0.87104 1.92865 1.40730 1.87827 1.96762 1.23478 1.02208 0.96706 0.96273 1.20300 0.90629 0.94469 0.83237 0.86312 1.24085 0.86153 0.85048 0.91554 1.69398 1.36369 1.27077 1.04043 1.84725 1.32916 1.66771 1.47231 0.92467 0.94870 0.94945 0.86186 0.85892 0.88812 0.89578 0.88021 0.87659 0.83983 0.74902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 10 C -0.59 -11.61 6.12 37.16 0.23 -11.38 16 11 S 2.60 47.70 5.62 -107.50 -0.60 47.10 16 12 O -0.95 -19.20 14.57 -63.93 -0.93 -20.13 16 13 O -0.96 -19.99 17.69 -57.54 -1.02 -21.00 16 14 N -1.01 -13.86 3.50 -105.64 -0.37 -14.23 16 15 C 0.09 0.99 6.78 -3.07 -0.02 0.97 16 16 C 0.08 0.67 4.76 -24.89 -0.12 0.56 16 17 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 18 F -0.20 -2.04 17.19 2.25 0.04 -2.00 16 19 C -0.15 -1.22 6.28 -24.58 -0.15 -1.37 16 20 C 0.22 2.68 3.71 -67.55 -0.25 2.43 16 21 H 0.12 1.39 8.13 -51.93 -0.42 0.97 16 22 C 0.36 4.90 4.57 -13.45 -0.06 4.83 16 23 N -0.72 -10.36 13.86 32.46 0.45 -9.91 16 24 O -0.52 -6.38 12.70 -30.68 -0.39 -6.77 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.12 2.13 8.14 -51.93 -0.42 1.70 16 29 H 0.12 2.27 8.14 -51.92 -0.42 1.84 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.85 8.11 -51.93 -0.42 0.42 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.80 7.68 -51.93 -0.40 0.40 16 34 H 0.34 4.26 8.56 -40.82 -0.35 3.91 16 35 H 0.40 3.41 8.70 45.56 0.40 3.81 16 LS Contribution 315.23 15.07 4.75 4.75 Total: -1.00 -36.49 315.23 -6.98 -43.47 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.70 Total: 4.99 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.93 Total: -16.68 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.82 Total: -50.13 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -2.34 Total: -47.90 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 47.70 SS G_CDS: -0.60 Total: 47.10 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.49 -6.98 -43.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330527457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.976 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds