Wall clock time and date at job start Tue Mar 31 2020 03:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 120.00156 * 2 1 4 4 H 1.48491 * 109.47064 * 270.00040 * 3 2 1 5 5 H 1.48499 * 109.46580 * 30.00067 * 3 2 1 6 6 H 1.48501 * 109.46886 * 149.99668 * 3 2 1 7 7 C 1.37876 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47244 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00450 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99444 * 179.97438 * 11 10 9 14 14 C 1.46981 * 127.03453 * 359.97438 * 13 11 10 15 15 C 1.50776 * 106.56607 * 180.02562 * 14 13 11 16 16 O 1.21280 * 125.42810 * 179.73938 * 15 14 13 17 17 N 1.34307 * 109.14765 * 0.02562 * 15 14 13 18 18 C 1.46493 * 124.85264 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47358 * 90.02149 * 18 17 15 20 20 F 1.39902 * 109.47167 * 60.00228 * 19 18 17 21 21 F 1.39902 * 109.47206 * 179.97438 * 19 18 17 22 22 F 1.39900 * 109.47322 * 300.00002 * 19 18 17 23 23 C 1.46223 * 110.29042 * 359.97438 * 17 15 14 24 24 H 0.97006 * 120.00077 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47579 * 59.99556 * 9 7 2 26 26 H 1.09007 * 109.47053 * 299.99483 * 9 7 2 27 27 H 1.08995 * 109.46950 * 59.99769 * 10 9 7 28 28 H 1.08999 * 109.46887 * 300.00032 * 10 9 7 29 29 H 1.09001 * 110.03828 * 60.75124 * 14 13 11 30 30 H 1.08997 * 110.08156 * 299.32233 * 14 13 11 31 31 H 1.09000 * 109.47370 * 210.02752 * 18 17 15 32 32 H 1.09002 * 109.47001 * 330.02215 * 18 17 15 33 33 H 1.08997 * 109.75206 * 240.34496 * 23 17 15 34 34 H 1.09003 * 109.74997 * 119.65557 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1343 0.0008 14 6 3.6244 -6.3142 -0.0008 15 6 3.8741 -7.8012 -0.0013 16 8 4.9651 -8.3308 -0.0070 17 7 2.6958 -8.4458 -0.0007 18 6 2.5384 -9.9022 -0.0015 19 6 2.4842 -10.4101 1.4407 20 9 1.3989 -9.8242 2.1010 21 9 2.3332 -11.8010 1.4399 22 9 3.6703 -10.0697 2.0999 23 6 1.5927 -7.4859 0.0008 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 4.0573 -5.8631 0.8920 30 1 4.0562 -5.8628 -0.8940 31 1 1.6143 -10.1675 -0.5151 32 1 3.3839 -10.3588 -0.5160 33 1 0.9824 -7.6276 0.8927 34 1 0.9809 -7.6265 -0.8903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330885735.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:59 Heat of formation + Delta-G solvation = -231.267568 kcal Electronic energy + Delta-G solvation = -23691.891145 eV Core-core repulsion = 19402.446351 eV Total energy + Delta-G solvation = -4289.444794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.16011 -48.68231 -48.67231 -42.15713 -40.26525 -37.94995 -35.72235 -35.55088 -33.02023 -31.12447 -29.57495 -28.07091 -26.18036 -24.54644 -23.43193 -21.52331 -20.77301 -19.65956 -19.56135 -19.09973 -18.71125 -17.96831 -17.60337 -16.93749 -16.71411 -16.57884 -16.32902 -16.10268 -15.58817 -15.49727 -15.10437 -14.97981 -14.89865 -14.81034 -14.77353 -14.32483 -14.23288 -13.85915 -13.76930 -13.63482 -13.22738 -13.18015 -12.80141 -12.46562 -11.89813 -11.66488 -11.46815 -11.27748 -10.91779 -10.70630 -10.53055 -9.79330 -8.15349 -6.28293 0.96594 1.10745 1.45785 1.47285 1.53826 1.58079 1.70467 1.78898 2.45327 2.72120 2.85917 3.03927 3.14947 3.18654 3.51191 3.87516 4.12076 4.17679 4.23908 4.27443 4.28001 4.47357 4.59129 4.73964 4.79155 5.09096 5.52412 5.55842 5.66486 5.88380 6.17438 6.20956 6.61698 6.89630 7.05511 7.41953 8.97034 Molecular weight = 294.10amu Principal moments of inertia in cm(-1) A = 0.035200 B = 0.003043 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.266187 B = 9199.735030 C = 9599.541792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.112 4.112 11 C 0.549 3.451 12 O -0.567 6.567 13 N -0.631 5.631 14 C 0.071 3.929 15 C 0.527 3.473 16 O -0.525 6.525 17 N -0.624 5.624 18 C 0.097 3.903 19 C 0.429 3.571 20 F -0.189 7.189 21 F -0.177 7.177 22 F -0.193 7.193 23 C 0.331 3.669 24 H 0.262 0.738 25 H -0.012 1.012 26 H -0.014 1.014 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.171 0.829 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 -22.565 -1.029 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.152 4.152 11 C 0.341 3.659 12 O -0.444 6.444 13 N -0.369 5.369 14 C -0.054 4.054 15 C 0.315 3.685 16 O -0.400 6.400 17 N -0.358 5.358 18 C -0.027 4.027 19 C 0.373 3.627 20 F -0.170 7.170 21 F -0.159 7.159 22 F -0.175 7.175 23 C 0.123 3.877 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.004 0.996 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.147 0.853 30 H 0.156 0.844 31 H 0.188 0.812 32 H 0.166 0.834 33 H 0.100 0.900 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.610 -22.728 -1.000 23.989 hybrid contribution -0.214 0.725 0.517 0.916 sum 7.396 -22.003 -0.483 23.218 Atomic orbital electron populations 1.70159 1.08193 1.27724 1.51577 1.26067 0.95661 1.03737 0.94800 0.85384 0.78729 0.78083 0.78436 1.19816 1.21498 1.17965 1.21705 0.94071 0.91530 1.50545 0.90480 1.18732 0.93736 0.92148 0.95153 1.21668 0.99367 0.88736 1.05383 1.20976 0.87188 0.84052 0.73664 1.90718 1.15955 1.87007 1.50693 1.48238 1.07801 1.05069 1.75793 1.22129 0.81511 0.93566 1.08232 1.20818 0.83617 0.89881 0.74148 1.90815 1.25860 1.73353 1.50001 1.48198 1.07774 1.05925 1.73953 1.22820 1.11703 0.78531 0.89638 1.21630 0.73193 0.75767 0.92123 1.93205 1.55819 1.84060 1.83954 1.93209 1.95402 1.30274 1.96986 1.93215 1.48208 1.92073 1.83978 1.21461 0.85943 0.75982 1.04287 0.92925 0.99389 0.99602 0.87408 0.87015 0.85320 0.84446 0.81166 0.83374 0.89980 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.58 13.29 21.45 0.28 -57.30 16 2 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.54 -29.22 9.11 25.60 0.23 -28.98 16 8 H 0.08 3.77 7.74 -2.91 -0.02 3.74 16 9 C 0.04 2.07 4.26 29.85 0.13 2.20 16 10 C -0.11 -3.99 4.92 29.85 0.15 -3.85 16 11 C 0.55 18.63 7.88 87.66 0.69 19.32 16 12 O -0.57 -24.72 16.38 -3.02 -0.05 -24.77 16 13 N -0.63 -14.85 3.36 -836.21 -2.81 -17.67 16 14 C 0.07 1.25 6.67 85.57 0.57 1.82 16 15 C 0.53 10.21 7.86 87.75 0.69 10.90 16 16 O -0.53 -13.10 17.67 -3.03 -0.05 -13.16 16 17 N -0.62 -9.72 2.80 -834.39 -2.33 -12.06 16 18 C 0.10 0.95 5.96 86.38 0.51 1.46 16 19 C 0.43 6.62 3.29 71.98 0.24 6.86 16 20 F -0.19 -3.48 16.63 44.97 0.75 -2.73 16 21 F -0.18 -2.63 17.32 44.97 0.78 -1.85 16 22 F -0.19 -4.14 16.98 44.97 0.76 -3.37 16 23 C 0.33 6.12 7.49 170.95 1.28 7.40 16 24 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 25 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 26 H -0.01 -0.86 8.10 -2.38 -0.02 -0.88 16 27 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 28 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 29 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.17 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.15 1.12 7.97 -2.39 -0.02 1.10 16 33 H 0.08 1.63 7.61 -2.39 -0.02 1.62 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -77.20 314.87 5.44 -71.76 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: 1.14 Total: -1.15 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 4.95 Total: 17.30 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -4.86 Total: -87.02 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.10 Total: -37.93 kcal Atomic # 9 Polarization: -10.25 SS G_CDS: 2.29 Total: -7.96 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -77.20 5.44 -71.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330885735.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.507 kcal (2) G-P(sol) polarization free energy of solvation -77.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds