Wall clock time and date at job start Tue Mar 31 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99865 * 2 1 4 4 C 1.38493 * 111.00033 * 123.95949 * 2 1 3 5 5 N 1.31196 * 125.79220 * 359.97048 * 4 2 1 6 6 C 1.34393 * 109.30423 * 180.02562 * 5 4 2 7 7 C 1.34384 * 108.31570 * 0.26736 * 6 5 4 8 8 C 1.50697 * 126.52301 * 179.70920 * 7 6 5 9 9 N 1.46904 * 109.46833 * 95.02873 * 8 7 6 10 10 C 1.46896 * 110.99938 * 294.29674 * 9 8 7 11 11 C 1.53235 * 109.34094 * 172.74764 * 10 9 8 12 12 N 1.47080 * 108.52219 * 53.83041 * 11 10 9 13 13 C 1.36935 * 120.88153 * 128.79424 * 12 11 10 14 14 H 1.08000 * 120.00147 * 206.59873 * 13 12 11 15 15 C 1.38813 * 119.99830 * 26.59491 * 13 12 11 16 16 N 1.31618 * 120.00122 * 17.01468 * 15 13 12 17 17 Si 1.86807 * 120.00003 * 197.01091 * 15 13 12 18 18 H 1.48507 * 109.47024 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47099 * 120.00052 * 17 15 13 20 20 H 1.48494 * 109.47312 * 240.00482 * 17 15 13 21 21 C 1.47075 * 118.23909 * 308.81875 * 12 11 10 22 22 C 1.46901 * 110.99882 * 169.99939 * 9 8 7 23 23 N 1.36030 * 125.78818 * 180.02562 * 4 2 1 24 24 C 1.46501 * 126.49449 * 0.02562 * 23 4 2 25 25 H 1.09000 * 109.47138 * 296.04064 * 1 2 3 26 26 H 1.09001 * 109.47264 * 56.04007 * 1 2 3 27 27 H 1.09006 * 109.47172 * 176.04475 * 1 2 3 28 28 H 1.08992 * 109.46976 * 183.95565 * 3 2 1 29 29 H 1.08999 * 109.47194 * 303.95607 * 3 2 1 30 30 H 1.09000 * 109.46407 * 63.95566 * 3 2 1 31 31 H 1.07993 * 125.84157 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47362 * 215.02549 * 8 7 6 33 33 H 1.09003 * 109.47702 * 335.02816 * 8 7 6 34 34 H 1.09000 * 109.49569 * 292.71287 * 10 9 8 35 35 H 1.09004 * 109.49193 * 52.78666 * 10 9 8 36 36 H 1.09004 * 109.63024 * 294.12227 * 11 10 9 37 37 H 1.08997 * 109.63138 * 173.54404 * 11 10 9 38 38 H 0.97005 * 119.99597 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.62851 * 291.47108 * 21 12 11 40 40 H 1.08997 * 109.79139 * 170.98521 * 21 12 11 41 41 H 1.09006 * 109.49091 * 307.20916 * 22 9 8 42 42 H 1.08998 * 109.49750 * 67.26553 * 22 9 8 43 43 H 1.09008 * 109.46824 * 89.97749 * 24 23 4 44 44 H 1.09000 * 109.47646 * 209.97941 * 24 23 4 45 45 H 1.09002 * 109.46980 * 329.98511 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9653 -0.7222 1.0724 5 7 1.2468 -1.3350 1.9832 6 6 2.0647 -1.9304 2.8679 7 6 3.3340 -1.6792 2.5050 8 6 4.5788 -2.1465 3.2142 9 7 5.0590 -3.3884 2.5936 10 6 4.1006 -4.4830 2.7966 11 6 4.5464 -5.7047 1.9861 12 7 5.9373 -6.0212 2.3448 13 6 6.2967 -7.2902 2.7132 14 1 7.1466 -7.4440 3.3616 15 6 5.5687 -8.3789 2.2532 16 7 4.7626 -8.2431 1.2216 17 14 5.7331 -10.0368 3.0982 18 1 6.6952 -9.9253 4.2240 19 1 4.4086 -10.4600 3.6197 20 1 6.2257 -11.0427 2.1233 21 6 6.9316 -4.9386 2.2980 22 6 6.3919 -3.7470 3.0963 23 7 3.2806 -0.9158 1.3607 24 6 4.4236 -0.4030 0.6013 25 1 -0.3633 0.4511 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3634 -1.0253 -0.0709 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 1.7043 1.8723 0.9233 31 1 1.7549 -2.5075 3.7265 32 1 5.3502 -1.3801 3.1374 33 1 4.3517 -2.3294 4.2645 34 1 4.0634 -4.7423 3.8547 35 1 3.1118 -4.1671 2.4642 36 1 4.4851 -5.4800 0.9213 37 1 3.9052 -6.5541 2.2214 38 1 4.2542 -9.0040 0.9000 39 1 7.0996 -4.6401 1.2632 40 1 7.8691 -5.2792 2.7375 41 1 7.0648 -2.8972 2.9811 42 1 6.3229 -4.0161 4.1502 43 1 4.7063 0.5765 0.9873 44 1 5.2642 -1.0895 0.7018 45 1 4.1508 -0.3141 -0.4503 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331242608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:16 Heat of formation + Delta-G solvation = 119.236430 kcal Electronic energy + Delta-G solvation = -24518.950010 eV Core-core repulsion = 21188.238552 eV Total energy + Delta-G solvation = -3330.711457 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -42.00404 -38.13181 -37.10434 -34.50042 -33.91886 -31.59447 -29.88965 -29.58854 -27.92118 -27.07832 -26.82823 -24.88670 -23.82372 -22.52891 -22.16155 -20.45157 -19.58701 -19.03049 -17.15169 -16.78322 -16.11003 -15.45068 -15.15519 -15.05025 -14.67840 -14.32643 -14.23684 -13.88287 -13.55983 -13.37282 -13.11270 -13.04868 -12.93113 -12.66282 -12.53565 -12.30989 -12.06688 -11.71913 -11.69943 -11.40834 -11.05366 -10.73830 -10.46270 -10.28954 -10.06715 -9.88763 -9.75737 -9.60158 -9.56831 -9.37214 -8.48493 -7.89582 -7.60289 -6.63978 -5.74913 -3.16454 2.07599 2.59912 3.17686 3.39320 3.46933 3.49013 3.75879 4.47255 4.54249 4.67434 4.82322 4.83890 5.00587 5.08693 5.19358 5.30573 5.31147 5.34807 5.42433 5.43687 5.46415 5.54066 5.63676 5.77264 5.86114 5.91426 5.93988 6.13300 6.17373 6.30425 6.36744 6.44441 6.57361 6.62587 6.75191 6.92187 6.95478 7.27514 7.52026 7.57958 7.69264 7.73817 7.85038 8.20785 8.46388 9.24117 9.87705 10.46100 11.33719 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.025346 B = 0.003694 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.447135 B = 7577.404864 C = 8056.226964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.462 5.462 3 C 0.018 3.982 4 C 0.378 3.622 5 N -0.514 5.514 6 C -0.011 4.011 7 C -0.001 4.001 8 C 0.128 3.872 9 N -0.531 5.531 10 C 0.036 3.964 11 C 0.181 3.819 12 N -0.595 5.595 13 C -0.252 4.252 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.902 5.902 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.150 3.850 22 C 0.045 3.955 23 N -0.451 5.451 24 C 0.075 3.925 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.166 0.834 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.088 0.912 38 H 0.253 0.747 39 H 0.023 0.977 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 20.299 -0.065 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.185 5.185 3 C -0.130 4.130 4 C 0.026 3.974 5 N -0.238 5.238 6 C -0.159 4.159 7 C -0.115 4.115 8 C -0.001 4.001 9 N -0.256 5.256 10 C -0.093 4.093 11 C 0.055 3.945 12 N -0.319 5.319 13 C -0.382 4.382 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.023 3.977 22 C -0.085 4.085 23 N -0.138 5.138 24 C -0.068 4.068 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.184 0.816 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.935 20.047 -1.145 20.462 hybrid contribution 0.620 -0.676 1.707 1.938 sum -3.315 19.371 0.562 19.661 Atomic orbital electron populations 1.22226 0.82868 1.04005 1.00981 1.58704 1.11015 1.13219 1.35524 1.22646 1.01432 0.87087 1.01799 1.20929 0.80581 1.02368 0.93531 1.70567 1.32495 1.16550 1.04202 1.21843 0.88412 1.04582 1.01093 1.20960 0.97587 1.02108 0.90852 1.20399 0.91669 0.93288 0.94776 1.62015 1.03214 1.02863 1.57503 1.22924 0.94798 0.92617 0.98988 1.20830 0.86060 0.92778 0.94865 1.44141 1.03115 1.05293 1.79328 1.19225 1.13999 0.82361 1.22623 0.91632 1.25027 1.00640 0.97689 0.96346 1.70048 1.30914 1.30175 1.23512 0.86240 0.77435 0.84181 0.79016 1.20328 1.21560 1.21741 1.20940 0.92406 0.87751 0.96570 1.22639 0.89494 0.98787 0.97559 1.44960 1.05937 1.41144 1.21752 1.22056 0.88442 0.99727 0.96556 0.93832 0.90824 0.90007 0.90779 0.89853 0.94487 0.81629 0.90926 0.92911 0.95660 0.91582 0.95862 0.89411 0.93671 0.95911 0.92632 0.92199 0.95222 0.91490 0.88626 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.49 8.92 60.07 0.54 1.02 16 2 N -0.46 -5.54 5.02 -190.47 -0.96 -6.49 16 3 C 0.02 0.15 9.31 60.07 0.56 0.71 16 4 C 0.38 5.59 7.14 -319.61 -2.28 3.31 16 5 N -0.51 -8.51 10.31 -13.92 -0.14 -8.65 16 6 C -0.01 -0.18 10.56 -17.79 -0.19 -0.36 16 7 C 0.00 -0.01 5.71 -81.34 -0.46 -0.48 16 8 C 0.13 1.82 5.06 -4.98 -0.03 1.79 16 9 N -0.53 -9.33 4.62 -235.76 -1.09 -10.42 16 10 C 0.04 0.72 5.46 -3.70 -0.02 0.70 16 11 C 0.18 4.51 5.42 -3.60 -0.02 4.49 16 12 N -0.60 -15.30 3.04 -172.02 -0.52 -15.82 16 13 C -0.25 -7.04 9.63 -15.06 -0.15 -7.18 16 14 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 15 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 16 N -0.90 -26.76 11.15 55.49 0.62 -26.14 16 17 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C 0.15 3.18 6.69 -3.60 -0.02 3.16 16 22 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 23 N -0.45 -6.29 3.20 -120.30 -0.38 -6.68 16 24 C 0.07 0.77 9.18 59.85 0.55 1.32 16 25 H 0.04 0.47 8.10 -51.93 -0.42 0.05 16 26 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.08 0.98 8.10 -51.93 -0.42 0.55 16 28 H 0.07 0.56 5.21 -51.93 -0.27 0.29 16 29 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.17 2.40 8.06 -52.49 -0.42 1.97 16 32 H 0.07 0.89 7.92 -51.93 -0.41 0.48 16 33 H 0.05 0.73 8.12 -51.93 -0.42 0.30 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 1.32 6.16 -51.93 -0.32 1.00 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 2.44 6.12 -51.93 -0.32 2.12 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 41 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.52 7.77 -51.92 -0.40 0.12 16 44 H 0.10 1.07 7.92 -51.93 -0.41 0.65 16 45 H 0.09 0.84 7.47 -51.93 -0.39 0.45 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -32.91 351.89 -11.38 -44.28 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.54 Total: -1.51 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -1.63 Total: 9.19 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -2.48 Total: -74.20 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.91 -11.38 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331242608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.521 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds