Wall clock time and date at job start Tue Mar 31 2020 04:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34878 * 116.99773 * 2 1 4 4 O 1.21599 * 119.99976 * 0.02562 * 3 2 1 5 5 C 1.46629 * 119.99994 * 179.97438 * 3 2 1 6 6 C 1.36442 * 125.86305 * 179.71841 * 5 3 2 7 7 C 1.41247 * 107.01108 * 180.26521 * 6 5 3 8 8 C 1.47401 * 126.45753 * 179.97438 * 7 6 5 9 9 O 1.21604 * 119.99580 * 0.03414 * 8 7 6 10 10 N 1.34772 * 119.99874 * 180.02562 * 8 7 6 11 11 C 1.47066 * 136.05885 * 359.63231 * 10 8 7 12 12 C 1.53756 * 87.88867 * 152.96049 * 11 10 8 13 13 O 1.42899 * 114.39527 * 272.67676 * 12 11 10 14 14 C 1.50700 * 114.26708 * 139.79167 * 12 11 10 15 15 H 1.08001 * 120.00091 * 266.47902 * 14 12 11 16 16 C 1.37879 * 120.00306 * 86.47752 * 14 12 11 17 17 N 1.31513 * 120.00384 * 180.02562 * 16 14 12 18 18 Si 1.86802 * 119.99714 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.47084 * 90.00211 * 18 16 14 20 20 H 1.48499 * 109.47164 * 210.00108 * 18 16 14 21 21 H 1.48504 * 109.47312 * 330.00399 * 18 16 14 22 22 C 1.47068 * 136.05765 * 180.02562 * 10 8 7 23 23 C 1.38244 * 107.08653 * 359.97438 * 7 6 5 24 24 N 1.34231 * 108.41748 * 0.02562 * 23 7 6 25 25 H 0.96998 * 125.39989 * 180.02562 * 24 23 7 26 26 H 1.08997 * 109.46938 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47005 * 299.99833 * 1 2 3 28 28 H 1.08994 * 109.47109 * 60.00146 * 1 2 3 29 29 H 1.08005 * 126.49551 * 0.26022 * 6 5 3 30 30 H 1.09000 * 113.47177 * 267.69334 * 11 10 8 31 31 H 1.09004 * 113.46980 * 38.13293 * 11 10 8 32 32 H 0.96700 * 114.00043 * 273.57879 * 13 12 11 33 33 H 0.96995 * 120.00210 * 180.02562 * 17 16 14 34 34 H 1.09003 * 113.46654 * 321.86469 * 22 10 8 35 35 H 1.08996 * 113.47163 * 92.30673 * 22 10 8 36 36 H 1.08005 * 125.78909 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2216 0.0005 5 6 3.5286 1.2786 0.0006 6 6 4.2689 2.4247 -0.0048 7 6 5.6277 2.0389 -0.0082 8 6 6.7941 2.9401 -0.0148 9 8 6.6312 4.1452 -0.0173 10 7 8.0409 2.4285 -0.0180 11 6 8.6333 1.0824 -0.0100 12 6 9.8588 1.6794 -0.7211 13 8 9.7551 1.7154 -2.1459 14 6 11.1800 1.1431 -0.2335 15 1 11.7209 1.6639 0.5428 16 6 11.6984 -0.0126 -0.7783 17 7 12.8512 -0.4809 -0.3524 18 14 10.7626 -0.9139 -2.1204 19 1 11.1800 -0.3960 -3.4482 20 1 11.0589 -2.3668 -2.0403 21 1 9.3049 -0.6953 -1.9398 22 6 9.4080 2.9707 -0.0239 23 6 5.6575 0.6568 -0.0041 24 7 4.3934 0.2053 0.0009 25 1 4.1302 -0.7283 0.0049 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.8882 3.4354 -0.0063 30 1 8.8510 0.7099 0.9910 31 1 8.0845 0.3630 -0.6179 32 1 10.0399 0.9005 -2.5817 33 1 13.2160 -1.2937 -0.7359 34 1 9.5194 3.8604 -0.6438 35 1 9.8298 3.0956 0.9733 36 1 6.5471 0.0442 -0.0048 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331492265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:42 Heat of formation + Delta-G solvation = -85.560191 kcal Electronic energy + Delta-G solvation = -23193.115147 eV Core-core repulsion = 19451.845440 eV Total energy + Delta-G solvation = -3741.269707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.79438 -41.40233 -40.89245 -39.03063 -37.61462 -36.31066 -34.50757 -32.74306 -31.60472 -30.38087 -28.61953 -27.33258 -26.98911 -24.33973 -23.82534 -21.74637 -21.40208 -20.63657 -19.65905 -19.06225 -18.34197 -18.11073 -17.71711 -17.57645 -16.59739 -16.53261 -16.33788 -15.67815 -15.52871 -15.18738 -14.80343 -14.70664 -14.66198 -14.38383 -14.21773 -13.95764 -13.72823 -13.61430 -13.10201 -12.81054 -12.56849 -12.34883 -11.98546 -11.91100 -11.86366 -11.51108 -11.04514 -10.87592 -10.44302 -10.37496 -9.76655 -9.52327 -8.38016 -6.50618 0.00739 0.62323 1.29276 1.32516 1.42327 1.46044 1.78495 1.79231 2.07316 2.22008 2.42529 2.80724 3.25026 3.58129 3.71227 3.81164 3.87742 3.97326 4.25881 4.31878 4.36615 4.44835 4.49214 4.66583 4.69860 4.73238 4.77210 4.91598 4.98132 5.10920 5.24574 5.34089 5.40884 6.07489 6.22403 6.51952 6.58328 6.71485 6.82841 7.15567 7.19689 8.77302 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.003809 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.131349 B = 7348.425612 C = 8143.980548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.545 3.455 4 O -0.527 6.527 5 C -0.052 4.052 6 C -0.050 4.050 7 C -0.252 4.252 8 C 0.606 3.394 9 O -0.600 6.600 10 N -0.634 5.634 11 C 0.070 3.930 12 C 0.184 3.816 13 O -0.558 6.558 14 C -0.538 4.538 15 H 0.058 0.942 16 C 0.027 3.973 17 N -0.925 5.925 18 Si 0.919 3.081 19 H -0.264 1.264 20 H -0.281 1.281 21 H -0.221 1.221 22 C 0.118 3.882 23 C 0.114 3.886 24 N -0.490 5.490 25 H 0.448 0.552 26 H 0.139 0.861 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.147 0.853 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.355 0.645 33 H 0.273 0.727 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 -8.417 0.297 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.274 6.274 3 C 0.391 3.609 4 O -0.417 6.417 5 C -0.161 4.161 6 C -0.076 4.076 7 C -0.261 4.261 8 C 0.400 3.600 9 O -0.483 6.483 10 N -0.366 5.366 11 C -0.052 4.052 12 C 0.143 3.857 13 O -0.370 6.370 14 C -0.576 4.576 15 H 0.076 0.924 16 C -0.174 4.174 17 N -0.562 5.562 18 Si 0.744 3.256 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.145 1.145 22 C -0.004 4.004 23 C -0.031 4.031 24 N -0.086 5.086 25 H 0.292 0.708 26 H 0.157 0.843 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.208 0.792 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -21.376 -7.140 0.417 22.541 hybrid contribution 0.282 -0.814 -0.552 1.023 sum -21.094 -7.954 -0.134 22.544 Atomic orbital electron populations 1.23643 0.73538 1.06179 1.02882 1.86534 1.25872 1.30863 1.84148 1.19711 0.86658 0.82116 0.72451 1.90911 1.65919 1.37022 1.47851 1.18718 0.87108 0.87977 1.22311 1.21070 0.90903 0.98030 0.97577 1.19431 0.92603 0.93484 1.20569 1.17255 0.80975 0.86657 0.75139 1.90707 1.85791 1.16945 1.54894 1.49424 1.03895 1.11784 1.71513 1.24512 0.92713 0.85093 1.02922 1.20306 0.92538 0.94326 0.78516 1.86499 1.88681 1.41565 1.20274 1.21235 1.04278 1.09577 1.22536 0.92400 1.25847 0.95401 0.97555 0.98645 1.69995 1.19550 1.23024 1.43625 0.86330 0.81485 0.78276 0.79547 1.19004 1.20791 1.14490 1.23166 0.78789 0.97841 1.00653 1.23247 0.88616 0.93905 0.97306 1.41660 1.04525 1.09784 1.52633 0.70836 0.84344 0.91662 0.91742 0.83545 0.86668 0.88933 0.79155 0.91709 0.92092 0.87698 0.76899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.52 16 2 O -0.36 -5.86 10.58 -57.91 -0.61 -6.47 16 3 C 0.54 12.48 7.93 70.01 0.56 13.03 16 4 O -0.53 -15.29 16.65 19.51 0.32 -14.97 16 5 C -0.05 -1.20 7.02 39.97 0.28 -0.92 16 6 C -0.05 -1.47 10.37 22.59 0.23 -1.23 16 7 C -0.25 -7.65 6.13 -20.12 -0.12 -7.78 16 8 C 0.61 23.59 8.06 86.66 0.70 24.29 16 9 O -0.60 -28.01 17.69 -4.04 -0.07 -28.08 16 10 N -0.63 -23.64 3.69 -862.18 -3.18 -26.82 16 11 C 0.07 2.32 5.99 83.26 0.50 2.82 16 12 C 0.18 7.71 1.10 -11.11 -0.01 7.70 16 13 O -0.56 -24.22 13.33 -148.98 -1.99 -26.20 16 14 C -0.54 -26.53 9.28 25.60 0.24 -26.30 16 15 H 0.06 3.17 8.06 -2.91 -0.02 3.15 16 16 C 0.03 1.32 5.47 84.66 0.46 1.78 16 17 N -0.92 -50.52 13.96 21.45 0.30 -50.22 16 18 Si 0.92 34.96 24.42 68.60 1.68 36.64 16 19 H -0.26 -9.96 7.06 99.48 0.70 -9.25 16 20 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16 21 H -0.22 -7.01 5.50 99.48 0.55 -6.46 16 22 C 0.12 4.75 8.02 83.18 0.67 5.42 16 23 C 0.11 2.38 11.09 84.33 0.94 3.31 16 24 N -0.49 -8.04 6.01 -183.40 -1.10 -9.15 16 25 H 0.45 3.75 8.96 -92.71 -0.83 2.92 16 26 H 0.14 0.47 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.15 4.63 8.06 -2.91 -0.02 4.61 16 30 H 0.12 3.46 8.10 -2.39 -0.02 3.44 16 31 H 0.09 2.53 5.14 -2.38 -0.01 2.52 16 32 H 0.36 14.23 3.16 -74.06 -0.23 14.00 16 33 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.11 3.95 8.10 -2.39 -0.02 3.93 16 36 H 0.21 3.41 5.13 -2.91 -0.01 3.39 16 Total: -1.00 -72.66 312.62 0.91 -71.74 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.07 Total: 29.88 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 5.63 Total: 23.65 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -3.98 Total: -86.19 kcal Atomic # 8 Polarization: -73.38 SS G_CDS: -2.35 Total: -75.72 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 1.68 Total: 36.64 kcal Total: -72.66 0.91 -71.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331492265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.816 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds