Wall clock time and date at job start Tue Mar 31 2020 04:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34814 * 117.00159 * 2 1 4 4 O 1.21536 * 119.99793 * 359.97438 * 3 2 1 5 5 C 1.47138 * 120.00014 * 179.97438 * 3 2 1 6 6 C 1.38011 * 125.91160 * 179.97438 * 5 3 2 7 7 C 1.39413 * 107.44810 * 179.77372 * 6 5 3 8 8 C 1.37941 * 107.47704 * 0.35803 * 7 6 5 9 9 C 1.47326 * 125.88888 * 179.90247 * 8 7 6 10 10 O 1.21608 * 120.00311 * 359.68891 * 9 8 7 11 11 N 1.34785 * 119.99915 * 179.68754 * 9 8 7 12 12 C 1.47576 * 134.49390 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.11846 * 155.36116 * 12 11 9 14 14 O 1.42894 * 113.74258 * 269.15648 * 13 12 11 15 15 C 1.50696 * 113.73834 * 137.95019 * 13 12 11 16 16 H 1.07999 * 120.00319 * 1.93267 * 15 13 12 17 17 C 1.37885 * 119.99717 * 181.92651 * 15 13 12 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47805 * 134.45494 * 359.87000 * 11 9 8 24 24 N 1.36710 * 108.22094 * 359.63882 * 8 7 6 25 25 H 0.96998 * 125.66440 * 180.22957 * 24 8 7 26 26 H 1.09000 * 109.47343 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47088 * 300.00893 * 1 2 3 28 28 H 1.09003 * 109.46696 * 60.00687 * 1 2 3 29 29 H 1.08002 * 126.27224 * 359.97438 * 6 5 3 30 30 H 1.08005 * 126.26310 * 180.25552 * 7 6 5 31 31 H 1.08999 * 113.76805 * 41.06190 * 12 11 9 32 32 H 1.09000 * 113.87378 * 269.67731 * 12 11 9 33 33 H 0.96701 * 113.99575 * 178.07128 * 14 13 12 34 34 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 35 35 H 1.09008 * 113.77106 * 90.37414 * 23 11 9 36 36 H 1.08997 * 113.84172 * 318.91386 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4022 2.2205 -0.0005 5 6 3.5335 1.2782 0.0006 6 6 4.2834 2.4367 0.0001 7 6 5.6270 2.0650 0.0062 8 6 5.6755 0.6865 0.0020 9 6 6.8987 -0.1347 0.0039 10 8 7.9905 0.4007 0.0040 11 7 6.8075 -1.4795 0.0057 12 6 7.7879 -2.5826 0.0074 13 6 6.6750 -3.4313 0.6486 14 8 6.6783 -3.3998 2.0772 15 6 6.5805 -4.8284 0.0919 16 1 7.2794 -5.1574 -0.6629 17 6 5.6018 -5.6868 0.5463 18 7 5.5196 -6.9063 0.0608 19 14 4.3927 -5.1176 1.8514 20 1 4.9378 -5.4237 3.1984 21 1 4.1802 -3.6534 1.7244 22 1 3.0989 -5.8233 1.6689 23 6 5.6849 -2.4409 0.0087 24 7 4.3928 0.2136 0.0017 25 1 4.1347 -0.7214 0.0023 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 3.8996 3.4463 -0.0011 30 1 6.4749 2.7340 0.0114 31 1 8.6418 -2.4104 0.6626 32 1 8.0770 -2.9174 -0.9888 33 1 5.9628 -3.9079 2.4834 34 1 4.8314 -7.5103 0.3807 35 1 5.3538 -2.7329 -0.9880 36 1 4.8625 -2.1560 0.6648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331574180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:46 Heat of formation + Delta-G solvation = -66.727272 kcal Electronic energy + Delta-G solvation = -23705.374571 eV Core-core repulsion = 19964.921521 eV Total energy + Delta-G solvation = -3740.453051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67437 -40.26024 -39.53768 -37.65102 -36.66997 -34.68853 -32.69501 -31.44850 -30.56972 -28.96822 -27.77540 -26.04312 -25.63985 -23.77516 -21.64418 -20.65475 -20.06671 -19.71683 -18.37744 -17.66508 -17.27618 -16.76579 -16.67286 -16.45976 -15.54291 -15.33748 -14.61778 -14.31397 -14.10933 -13.74713 -13.70507 -13.42343 -13.13382 -13.07296 -12.87487 -12.74047 -12.44404 -12.41017 -12.31472 -11.46429 -11.12886 -11.09732 -10.99781 -10.77352 -10.29654 -10.12136 -9.53154 -9.27489 -9.18854 -8.91057 -8.61498 -8.23581 -6.55599 -4.63143 0.78241 1.98319 2.32471 2.81453 2.85340 2.87712 2.90256 3.01786 3.08165 3.46700 3.88946 4.41098 4.56239 4.61536 4.84606 4.90222 4.93130 5.06632 5.09085 5.27501 5.30544 5.67565 5.73187 5.76499 5.89397 5.95195 6.01870 6.13652 6.15825 6.39842 6.42555 6.63966 7.02148 7.05416 7.45569 7.87994 7.95457 8.29098 8.34826 8.49014 9.00747 10.56299 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.005891 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.021303 B = 4752.222172 C = 6418.485196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.362 6.362 3 C 0.537 3.463 4 O -0.496 6.496 5 C -0.022 4.022 6 C -0.107 4.107 7 C -0.135 4.135 8 C 0.021 3.979 9 C 0.598 3.402 10 O -0.535 6.535 11 N -0.633 5.633 12 C 0.132 3.868 13 C 0.201 3.799 14 O -0.551 6.551 15 C -0.539 4.539 16 H 0.094 0.906 17 C 0.082 3.918 18 N -0.871 5.871 19 Si 0.857 3.143 20 H -0.265 1.265 21 H -0.260 1.260 22 H -0.281 1.281 23 C 0.047 3.953 24 N -0.508 5.508 25 H 0.426 0.574 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.353 0.647 34 H 0.272 0.728 35 H 0.103 0.897 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 11.272 -0.300 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.279 6.279 3 C 0.382 3.618 4 O -0.384 6.384 5 C -0.136 4.136 6 C -0.133 4.133 7 C -0.161 4.161 8 C -0.099 4.099 9 C 0.387 3.613 10 O -0.412 6.412 11 N -0.367 5.367 12 C 0.011 3.989 13 C 0.160 3.840 14 O -0.362 6.362 15 C -0.577 4.577 16 H 0.112 0.888 17 C -0.124 4.124 18 N -0.506 5.506 19 Si 0.686 3.314 20 H -0.191 1.191 21 H -0.186 1.186 22 H -0.207 1.207 23 C -0.076 4.076 24 N -0.108 5.108 25 H 0.269 0.731 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.205 0.795 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.549 12.024 -0.404 14.203 hybrid contribution -1.769 -0.649 0.757 2.031 sum -9.318 11.375 0.353 14.709 Atomic orbital electron populations 1.23330 0.75196 1.04156 1.02786 1.86582 1.24340 1.32500 1.84459 1.19948 0.86897 0.81870 0.73104 1.90874 1.65311 1.35809 1.46387 1.19440 0.86633 0.88609 1.18964 1.21265 0.91846 0.96984 1.03207 1.21256 0.97087 0.92048 1.05682 1.20955 0.83424 0.94616 1.10897 1.16778 0.86915 0.80236 0.77409 1.90797 1.26833 1.71490 1.52096 1.50144 1.12723 1.02960 1.70828 1.23352 0.94058 0.80638 1.00887 1.20485 0.90754 0.93746 0.79010 1.86487 1.54572 1.74814 1.20332 1.21203 1.17323 0.94219 1.24905 0.88807 1.25009 0.96863 0.94725 0.95826 1.69847 1.33507 1.05621 1.41620 0.87369 0.81782 0.79396 0.82886 1.19126 1.18564 1.20727 1.24942 0.92084 0.88264 1.02300 1.42497 1.05324 1.09532 1.53453 0.73091 0.87671 0.91588 0.91537 0.82373 0.82186 0.89990 0.88175 0.79479 0.91725 0.87913 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.36 -4.47 10.58 -40.80 -0.43 -4.90 16 3 C 0.54 7.34 7.95 34.34 0.27 7.61 16 4 O -0.50 -7.41 16.67 -19.29 -0.32 -7.73 16 5 C -0.02 -0.30 7.07 -82.12 -0.58 -0.88 16 6 C -0.11 -1.37 10.61 -39.23 -0.42 -1.79 16 7 C -0.14 -1.88 10.60 -39.25 -0.42 -2.30 16 8 C 0.02 0.34 6.99 -82.10 -0.57 -0.24 16 9 C 0.60 11.18 8.04 -12.56 -0.10 11.08 16 10 O -0.53 -11.23 17.60 5.27 0.09 -11.13 16 11 N -0.63 -11.83 3.61 -179.41 -0.65 -12.48 16 12 C 0.13 2.54 8.23 -2.97 -0.02 2.51 16 13 C 0.20 4.25 1.06 -90.84 -0.10 4.15 16 14 O -0.55 -12.19 13.35 -35.23 -0.47 -12.66 16 15 C -0.54 -13.02 9.19 -34.44 -0.32 -13.33 16 16 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 17 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 18 N -0.87 -23.20 13.96 55.43 0.77 -22.43 16 19 Si 0.86 17.70 24.31 -169.99 -4.13 13.57 16 20 H -0.27 -5.40 7.05 56.52 0.40 -5.00 16 21 H -0.26 -4.92 5.16 56.52 0.29 -4.63 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 23 C 0.05 0.86 5.84 -2.83 -0.02 0.84 16 24 N -0.51 -7.40 5.91 -5.91 -0.03 -7.43 16 25 H 0.43 6.01 5.72 -40.82 -0.23 5.77 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.16 1.99 8.06 -52.48 -0.42 1.56 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.10 1.77 8.09 -51.93 -0.42 1.35 16 33 H 0.35 7.44 3.57 45.56 0.16 7.60 16 34 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 35 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 36 H 0.06 1.11 5.20 -51.93 -0.27 0.84 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -29.63 312.63 -5.15 -34.77 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -3.39 Total: 14.72 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -1.30 Total: 11.00 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.09 Total: -42.34 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -1.13 Total: -36.43 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -4.13 Total: 13.57 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.63 -5.15 -34.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331574180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.955 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds